Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb028520 Zea mays HOM05D004325 ORTHO05D005470 7.7e-98 360.5 190 100.0
Zm00001eb136920 Zea mays HOM05D004325 ORTHO05D005470 3.7e-92 341.7 186 96.8
Os12g0562900 Oryza sativa ssp. japonica HOM05D004325 ORTHO05D005470 2.8e-87 325.5 181 93.4
Duzib151G0878 Durio zibethinus HOM05D004325 ORTHO05D005470 1.1e-78 297.0 190 82.1
MBI19_g03261_MAGBIO Magnolia biondii HOM05D004325 ORTHO05D005470 1.4e-78 296.6 176 85.8
COL.COLO4_34588 Corchorus olitorius HOM05D004325 ORTHO05D005470 5.2e-78 294.7 186 82.8
TAR362G0217 Trochodendron aralioides HOM05D004325 ORTHO05D005470 6.8e-78 294.3 182 82.4
Dinv44270 Davidia involucrata HOM05D004325 ORTHO05D005470 2.6e-77 292.4 184 82.6
CANSAT78G0850 Cannabis sativa HOM05D004325 ORTHO05D005470 3.4e-77 292.0 184 83.2
Peaxi162Scf00228g00059 Petunia axillaris HOM05D004325 ORTHO05D005470 3.4e-77 292.0 189 79.4
Cpa.g.sc9.38 Carica papaya HOM05D004325 ORTHO05D005470 9.8e-77 290.4 183 81.4
Actinidia13352 Actinidia chinensis HOM05D004325 ORTHO05D005470 1.3e-76 290.0 186 83.3
Duzib052G1161 Durio zibethinus HOM05D004325 ORTHO05D005470 1.3e-76 290.0 183 82.0
Thecc.04G303800 Theobroma cacao HOM05D004325 ORTHO05D005470 1.7e-76 289.7 187 81.8
Gohir.A01G034900 Gossypium hirsutum HOM05D004325 ORTHO05D005470 2.2e-76 289.3 186 81.2
Cc03_g00680 Coffea canephora HOM05D004325 ORTHO05D005470 2.9e-76 288.9 185 81.1
HPP92_027563 Vanilla planifolia HOM05D004325 ORTHO05D005470 6.4e-76 287.7 198 77.8
CSS0027180 Camellia sinensis var. sinensis HOM05D004325 ORTHO05D005470 1.1e-75 287.0 187 78.6
TAR633G1272 Trochodendron aralioides HOM05D004325 ORTHO05D005470 1.1e-75 287.0 174 83.9
Gohir.D01G023556 Gossypium hirsutum HOM05D004325 ORTHO05D005470 1.4e-75 286.6 186 81.2
Gorai.002G030800 Gossypium raimondii HOM05D004325 ORTHO05D005470 1.4e-75 286.6 186 81.2
Solyc05g053390.4 Solanum lycopersicum HOM05D004325 ORTHO05D005470 1.4e-75 286.6 186 81.2
Sopen05g031900 Solanum pennellii HOM05D004325 ORTHO05D005470 1.9e-75 286.2 186 81.2
Eucgr.E02007 Eucalyptus grandis HOM05D004325 ORTHO05D005470 3.2e-75 285.4 182 81.3
ECA233G2476 Erigeron canadensis HOM05D004325 ORTHO05D005470 5.4e-75 284.6 188 79.3
Prupe.1G115000 Prunus persica HOM05D004325 ORTHO05D005470 5.4e-75 284.6 185 80.0
Cfa015290 Carpinus fangiana HOM05D004325 ORTHO05D005470 1.2e-74 283.5 183 80.3
Haze_01324 Corylus avellana HOM05D004325 ORTHO05D005470 1.6e-74 283.1 181 81.8
MD16G1151300 Malus domestica HOM05D004325 ORTHO05D005470 2.1e-74 282.7 185 78.9
Lsat_1_v5_gn_1_117981 Lactuca sativa HOM05D004325 ORTHO05D005470 2.7e-74 282.3 189 78.3
Lalb_Chr12g0200831 Lupinus albus HOM05D004325 ORTHO05D005470 3.5e-74 282.0 189 77.8
PGSC0003DMG400027209 Solanum tuberosum HOM05D004325 ORTHO05D005470 3.5e-74 282.0 184 79.9
AT5G49510 Arabidopsis thaliana HOM05D004325 ORTHO05D005470 4.6e-74 281.6 183 79.8
arahy.Tifrunner.gnm1.ann1.NK7FC1 Arachis hypogaea HOM05D004325 ORTHO05D005470 4.6e-74 281.6 187 76.5
MSTRG.24825 Avicennia marina HOM05D004325 ORTHO05D005470 4.6e-74 281.6 171 84.2
Ciclev10005911m.g Citrus clementina HOM05D004325 ORTHO05D005470 4.6e-74 281.6 182 80.8
PGR004G2019 Punica granatum HOM05D004325 ORTHO05D005470 4.6e-74 281.6 185 80.0
arahy.Tifrunner.gnm1.ann1.H88EK8 Arachis hypogaea HOM05D004325 ORTHO05D005470 6.0e-74 281.2 187 77.0
arahy.Tifrunner.gnm1.ann1.RG9184 Arachis hypogaea HOM05D004325 ORTHO05D005470 6.0e-74 281.2 187 77.0
Atru.chr4.3046 Acer truncatum HOM05D004325 ORTHO05D005470 1.0e-73 280.4 172 83.1
AL8G23260 Arabidopsis lyrata HOM05D004325 ORTHO05D005470 1.0e-73 280.4 183 79.2
Rhsim02G0002800 Rhododendron simsii HOM05D004325 ORTHO05D005470 1.0e-73 280.4 184 79.9
Migut.N00036 Erythranthe guttata HOM05D004325 ORTHO05D005470 1.3e-73 280.0 178 80.3
ATR0693G272 Amborella trichopoda HOM05D004325 ORTHO05D005470 1.7e-73 279.6 184 79.9
Carub.0008s0936 Capsella rubella HOM05D004325 ORTHO05D005470 1.7e-73 279.6 183 79.2
Thhalv10004957m.g Eutrema salsugineum HOM05D004325 ORTHO05D005470 1.7e-73 279.6 183 78.7
Medtr2g033830 Medicago truncatula HOM05D004325 ORTHO05D005470 1.7e-73 279.6 182 79.7
unitig_0.g2580 Utricularia gibba HOM05D004325 ORTHO05D005470 1.7e-73 279.6 182 79.1
Glyma.09G034400 Glycine max HOM05D004325 ORTHO05D005470 3.9e-73 278.5 182 78.6
Nitab4.5_0000647g0250 Nicotiana tabacum HOM05D004325 ORTHO05D005470 3.9e-73 278.5 175 80.6
THA.LOC104827099 Tarenaya hassleriana HOM05D004325 ORTHO05D005470 3.9e-73 278.5 185 78.4
Aa31LG11G8140 Aethionema arabicum HOM05D004325 ORTHO05D005470 5.1e-73 278.1 194 75.8
CARHR287830 Cardamine hirsuta HOM05D004325 ORTHO05D005470 5.1e-73 278.1 181 79.0
Ca_00969_v3 Cicer arietinum L. HOM05D004325 ORTHO05D005470 6.6e-73 277.7 181 78.5
Hma1.2p1_0013F.1_g008360 Hydrangea macrophylla HOM05D004325 ORTHO05D005470 6.6e-73 277.7 184 77.7
HanXRQChr17g0569361 Helianthus annuus HOM05D004325 ORTHO05D005470 8.6e-73 277.3 183 79.2
MD13G1150800 Malus domestica HOM05D004325 ORTHO05D005470 8.6e-73 277.3 185 77.3
Psat1g162400 Pisum sativum HOM05D004325 ORTHO05D005470 8.6e-73 277.3 180 79.4
RcHm_v2.0_Chr4g0425791 Rosa chinensis HOM05D004325 ORTHO05D005470 8.6e-73 277.3 183 78.1
Sed0024233 Sechium edule HOM05D004325 ORTHO05D005470 1.1e-72 276.9 186 79.0
AUR62039261 Chenopodium quinoa HOM05D004325 ORTHO05D005470 1.5e-72 276.6 177 80.8
PSO421G0271 Papaver somniferum HOM05D004325 ORTHO05D005470 1.5e-72 276.6 181 77.9
FvH4_4g20250 Fragaria vesca HOM05D004325 ORTHO05D005470 1.9e-72 276.2 182 78.6
Glyma.15G139100 Glycine max HOM05D004325 ORTHO05D005470 1.9e-72 276.2 174 81.0
Lj6g0013793 Lotus japonicus HOM05D004325 ORTHO05D005470 1.9e-72 276.2 184 78.3
Nitab4.5_0000891g0010 Nicotiana tabacum HOM05D004325 ORTHO05D005470 1.9e-72 276.2 188 77.7
Sp2g19810 Schrenkiella parvula HOM05D004325 ORTHO05D005470 1.9e-72 276.2 183 78.1
SpUn0021_0040 Schrenkiella parvula HOM05D004325 ORTHO05D005470 1.9e-72 276.2 183 78.1
Sed0016650 Sechium edule HOM05D004325 ORTHO05D005470 1.9e-72 276.2 183 79.2
PSO063G1209 Papaver somniferum HOM05D004325 ORTHO05D005470 2.5e-72 275.8 184 77.7
Potri.008G103400 Populus trichocarpa HOM05D004325 ORTHO05D005470 2.5e-72 275.8 186 78.0
Hund03133 Selenicereus undatus HOM05D004325 ORTHO05D005470 2.5e-72 275.8 172 82.0
THA.LOC104802708 Tarenaya hassleriana HOM05D004325 ORTHO05D005470 2.5e-72 275.8 185 79.5
Nitab4.5_0004165g0020 Nicotiana tabacum HOM05D004325 ORTHO05D005470 3.3e-72 275.4 175 80.0
PSO832G3679 Papaver somniferum HOM05D004325 ORTHO05D005470 4.3e-72 275.0 184 78.3
TPR.G30807 Trifolium pratense HOM05D004325 ORTHO05D005470 4.3e-72 275.0 182 78.0
CDE01G0033 Ceratophyllum demersum HOM05D004325 ORTHO05D005470 5.6e-72 274.6 176 77.8
AUR62016229 Chenopodium quinoa HOM05D004325 ORTHO05D005470 5.6e-72 274.6 177 80.8
Nitab4.5_0000177g0050 Nicotiana tabacum HOM05D004325 ORTHO05D005470 9.5e-72 273.9 188 77.1
Manes.03G206300 Manihot esculenta HOM05D004325 ORTHO05D005470 1.2e-71 273.5 184 78.3
Sc25g0003210 Simmondsia chinensis HOM05D004325 ORTHO05D005470 1.6e-71 273.1 183 76.0
CSS0047955 Camellia sinensis var. sinensis HOM05D004325 ORTHO05D005470 2.1e-71 272.7 184 76.1
VMungo0540G0568 Vigna mungo HOM05D004325 ORTHO05D005470 2.1e-71 272.7 187 76.5
BcaC04g23736 Brassica carinata HOM05D004325 ORTHO05D005470 2.8e-71 272.3 184 76.1
C09p05230 Brassica napus HOM05D004325 ORTHO05D005470 2.8e-71 272.3 184 76.1
BraA09t36122Z Brassica rapa HOM05D004325 ORTHO05D005470 2.8e-71 272.3 184 76.1
Eucgr.D01575 Eucalyptus grandis HOM05D004325 ORTHO05D005470 2.8e-71 272.3 182 78.0
SGA_v2.0_scaffold528G52737 Striga asiatica HOM05D004325 ORTHO05D005470 2.8e-71 272.3 201 71.6
BcaB04g19615 Brassica carinata HOM05D004325 ORTHO05D005470 3.6e-71 271.9 184 76.1
TWI73G0086 Tripterygium wilfordii HOM05D004325 ORTHO05D005470 3.6e-71 271.9 181 77.3
Sabra08G0078100 Salix brachista HOM05D004325 ORTHO05D005470 4.7e-71 271.6 180 80.0
A09p04850 Brassica napus HOM05D004325 ORTHO05D005470 6.2e-71 271.2 184 76.1
A06p38330 Brassica napus HOM05D004325 ORTHO05D005470 8.1e-71 270.8 183 77.0
C07p39920 Brassica napus HOM05D004325 ORTHO05D005470 8.1e-71 270.8 183 77.0
BolC7t44524H Brassica oleracea HOM05D004325 ORTHO05D005470 8.1e-71 270.8 183 77.0
BraA06t26747Z Brassica rapa HOM05D004325 ORTHO05D005470 8.1e-71 270.8 183 77.0
ClCG05G006650 Citrullus lanatus HOM05D004325 ORTHO05D005470 8.1e-71 270.8 187 78.1
Potri.010G147600 Populus trichocarpa HOM05D004325 ORTHO05D005470 1.1e-70 270.4 185 76.8
Hund11985 Selenicereus undatus HOM05D004325 ORTHO05D005470 1.1e-70 270.4 178 77.5
vmacro15176 Vaccinium macrocarpon HOM05D004325 ORTHO05D005470 1.1e-70 270.4 228 67.1
Ah.13g071390 Amaranthus hybridus HOM05D004325 ORTHO05D005470 3.1e-70 268.9 179 77.7
Phvul.006G119000 Phaseolus vulgaris HOM05D004325 ORTHO05D005470 3.1e-70 268.9 173 79.2
PSO724G0368 Papaver somniferum HOM05D004325 ORTHO05D005470 6.8e-70 267.7 181 75.7
CsaV3_3G015280 Cucumis sativus L. HOM05D004325 ORTHO05D005470 4.4e-69 265.0 187 76.5
FAN12G3971 Fragaria x ananassa HOM05D004325 ORTHO05D005470 2.4e-67 259.2 215 66.5
Aqoxy3G01635 Aquilegia oxysepala HOM05D004325 ORTHO05D005470 9.2e-67 257.3 184 75.0
FAN07G0536 Fragaria x ananassa HOM05D004325 ORTHO05D005470 3.5e-66 255.4 224 63.8
Lj3A833G34 Lonicera japonica HOM05D004325 ORTHO05D005470 1.1e-64 250.4 168 80.4
Sabra10G0113800 Salix brachista HOM05D004325 ORTHO05D005470 1.9e-64 249.6 229 62.0
SalBow5G2618 Salvia bowleyana HOM05D004325 ORTHO05D005470 7.3e-64 247.7 159 80.5
BolC9t53449H Brassica oleracea HOM05D004325 ORTHO05D005470 4.7e-63 245.0 244 57.4
EL10Ac3g05527 Beta vulgaris HOM05D004325 ORTHO05D005470 1.8e-62 243.0 162 78.4
TWI09G1034 Tripterygium wilfordii HOM05D004325 ORTHO05D005470 2.4e-62 242.7 181 71.3
Nn3g21742 Nelumbo nucifera HOM05D004325 ORTHO05D005470 8.9e-62 240.7 180 72.8
SMO116G0307 Selaginella moellendorffii HOM05D004325 ORTHO05D005470 4.4e-61 238.4 191 65.4
SEGI_09014 Sequoiadendron giganteum HOM05D004325 ORTHO05D005470 2.4e-59 232.6 184 67.9
CAN.G945.3 Capsicum annuum HOM05D004325 ORTHO05D005470 3.5e-58 228.8 137 83.9
Eucgr.E01999 Eucalyptus grandis HOM05D004325 ORTHO05D005470 2.3e-57 226.1 183 68.3
Mapoly0057s0039 Marchantia polymorpha HOM05D004325 ORTHO05D005470 2.5e-56 222.6 181 64.6
AagrBONN_evm.TU.Sc2ySwM_344.4436 Anthoceros agrestis HOM05D004325 ORTHO05D005470 7.3e-56 221.1 175 63.4
TPR.G28959 Trifolium pratense HOM05D004325 ORTHO05D005470 1.8e-54 216.5 135 80.7
GSVIVG01034969001 Vitis vinifera HOM05D004325 ORTHO05D005470 1.8e-54 216.5 128 85.2
Oeu001162.1 Olea europaea HOM05D004325 ORTHO05D005470 4.4e-53 211.8 128 85.2
Pp3c8_18130 Physcomitrium patens HOM05D004325 ORTHO05D005470 1.3e-52 210.3 174 60.3
CiPaw.01G136700 Carya illinoinensis HOM05D004325 ORTHO05D005470 1.1e-51 207.2 127 81.9
Eucgr.E01982 Eucalyptus grandis HOM05D004325 ORTHO05D005470 1.3e-49 200.3 132 79.5
HPP92_017247 Vanilla planifolia HOM05D004325 ORTHO05D005470 1.5e-48 196.8 126 82.5
MELO3C006723.2 Cucumis melo HOM05D004325 ORTHO05D005470 1.4e-46 190.3 142 71.8
CDE12G0495 Ceratophyllum demersum HOM05D004325 ORTHO05D005470 1.8e-46 189.9 121 77.7
Lalb_Chr13g0298551 Lupinus albus HOM05D004325 ORTHO05D005470 1.8e-46 189.9 132 74.2
CiPaw.02G073600 Carya illinoinensis HOM05D004325 ORTHO05D005470 3.1e-46 189.1 203 58.1
Sopen01g024490 Solanum pennellii HOM05D004325 ORTHO05D005470 1.3e-44 183.7 110 86.4
MSTRG.3849 Avicennia marina HOM05D004325 ORTHO05D005470 3.8e-44 182.2 131 69.5
Eucgr.D01598 Eucalyptus grandis HOM05D004325 ORTHO05D005470 1.1e-38 164.1 109 78.9
Eucgr.D01586 Eucalyptus grandis HOM05D004325 ORTHO05D005470 1.4e-38 163.7 102 80.4
Actinidia18462 Actinidia chinensis HOM05D004325 ORTHO05D005470 3.4e-37 159.1 113 75.2
QL06p012738 Quercus lobata HOM05D004325 ORTHO05D005470 3.4e-37 159.1 101 81.2
HPP92_017255 Vanilla planifolia HOM05D004325 ORTHO05D005470 1.1e-35 154.1 102 81.4
Eucgr.D01580 Eucalyptus grandis HOM05D004325 ORTHO05D005470 3.5e-34 149.1 99 76.8
PRCOL_00000812 Prasinoderma coloniale HOM05D004325 ORTHO05D005470 1.3e-33 147.1 178 46.6
Dinv15146 Davidia involucrata HOM05D004325 ORTHO05D005470 3.1e-30 136.0 102 69.6
MCO08G322 Micromonas commoda HOM05D004325 ORTHO05D005470 4.1e-30 135.6 163 44.2
Eucgr.D01581 Eucalyptus grandis HOM05D004325 ORTHO05D005470 1.2e-29 134.0 82 81.7
DCAR_026989 Daucus carota HOM05D004325 ORTHO05D005470 1.0e-28 131.0 92 75.0
MBI14_g36884_MAGBIO Magnolia biondii HOM05D004325 ORTHO05D005470 1.0e-28 131.0 110 66.4
QL06p012730 Quercus lobata HOM05D004325 ORTHO05D005470 6.5e-28 128.3 89 75.3
Haze_26161 Corylus avellana HOM05D004325 ORTHO05D005470 1.9e-27 126.7 166 39.8
Cre06.g261650 Chlamydomonas reinhardtii HOM05D004325 ORTHO05D005470 7.9e-26 121.3 179 38.0
Eucgr.D01577 Eucalyptus grandis HOM05D004325 ORTHO05D005470 4.3e-24 115.5 94 64.9
CBR_g12436 Chara braunii HOM05D004325 ORTHO05D005470 7.4e-24 114.8 85 67.1
Glyma.07G238200 Glycine max HOM05D004325 ORTHO05D005470 3.7e-23 112.5 75 74.7
Glyma.17G035301 Glycine max HOM05D004325 ORTHO05D005470 1.1e-22 110.9 101 62.4
Actinidia31558 Actinidia chinensis HOM05D004325 ORTHO05D005470 1.8e-17 93.6 60 76.7
Eucgr.E01978 Eucalyptus grandis HOM05D004325 ORTHO05D005470 2.0e-13 80.1 53 73.6
Solyc01g058597.1 Solanum lycopersicum HOM05D004325 ORTHO05D005470 2.9e-12 76.3 47 78.7
CSS0004484 Camellia sinensis var. sinensis HOM05D004325 ORTHO05D022134 3.9e-09 65.9 111 42.3
CSS0013046 Camellia sinensis var. sinensis HOM05D004325 ORTHO05D022134 3.9e-09 65.9 114 40.4
CSS0039135 Camellia sinensis var. sinensis HOM05D004325 ORTHO05D022134 8.8e-09 64.7 114 40.4
CSS0044452 Camellia sinensis var. sinensis HOM05D004325 ORTHO05D022134 8.8e-09 64.7 114 40.4
TPR.G26018 Trifolium pratense HOM05D004325 ORTHO05D049290 1.5e-08 63.9 64 56.2
CSS0031168 Camellia sinensis var. sinensis HOM05D004325 ORTHO05D022134 3.3e-08 62.8 114 39.5
TPR.G25439 Trifolium pratense HOM05D004325 ORTHO05D005470 7.4e-08 61.6 114 40.4
Actinidia14254 Actinidia chinensis HOM05D004325 ORTHO05D005470 4.8e-07 58.9 36 77.8


User provided reference genes

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