Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb028460 Zea mays HOM05D005541 ORTHO05D006875 1.8e-170 602.4 295 100.0
Zm00001eb136970 Zea mays HOM05D005541 ORTHO05D006875 1.5e-124 449.9 233 93.1
Aqoxy7G03592 Aquilegia oxysepala HOM05D005541 ORTHO05D006875 6.4e-83 311.6 279 53.8
Lsat_1_v5_gn_7_46800 Lactuca sativa HOM05D005541 ORTHO05D006875 1.9e-82 310.1 281 53.4
TAR100G0002 Trochodendron aralioides HOM05D005541 ORTHO05D006875 1.9e-82 310.1 295 53.9
TAR170G0003 Trochodendron aralioides HOM05D005541 ORTHO05D006875 1.9e-82 310.1 295 53.9
Gorai.004G109500 Gossypium raimondii HOM05D005541 ORTHO05D006875 3.2e-82 309.3 286 53.8
Nn8g39653 Nelumbo nucifera HOM05D005541 ORTHO05D006875 4.2e-82 308.9 288 54.9
HanXRQChr03g0063361 Helianthus annuus HOM05D005541 ORTHO05D006875 7.1e-82 308.1 292 53.4
Thecc.09G137600 Theobroma cacao HOM05D005541 ORTHO05D006875 9.2e-82 307.8 278 55.0
Gohir.A08G090600 Gossypium hirsutum HOM05D005541 ORTHO05D006875 2.7e-81 306.2 284 54.2
TWI63G0008 Tripterygium wilfordii HOM05D005541 ORTHO05D006875 4.6e-81 305.4 258 57.0
TWI63G1467 Tripterygium wilfordii HOM05D005541 ORTHO05D006875 1.0e-80 304.3 258 56.6
HPP92_020539 Vanilla planifolia HOM05D005541 ORTHO05D006875 1.0e-80 304.3 280 53.2
Dinv36447 Davidia involucrata HOM05D005541 ORTHO05D006875 1.7e-80 303.5 281 54.4
Actinidia26358 Actinidia chinensis HOM05D005541 ORTHO05D006875 3.9e-80 302.4 263 54.0
Ciclev10009016m.g Citrus clementina HOM05D005541 ORTHO05D006875 1.1e-79 300.8 284 52.5
Cc06_g07640 Coffea canephora HOM05D005541 ORTHO05D006875 1.9e-79 300.1 258 56.6
vmacro06115 Vaccinium macrocarpon HOM05D005541 ORTHO05D006875 1.9e-79 300.1 256 56.2
CANSAT11G2438 Cannabis sativa HOM05D005541 ORTHO05D006875 2.5e-79 299.7 266 52.6
Actinidia14228 Actinidia chinensis HOM05D005541 ORTHO05D006875 3.3e-79 299.3 272 52.6
GSVIVG01012859001 Vitis vinifera HOM05D005541 ORTHO05D006875 5.6e-79 298.5 282 51.4
Manes.14G119600 Manihot esculenta HOM05D005541 ORTHO05D006875 1.6e-78 297.0 287 52.6
TWI32G1342 Tripterygium wilfordii HOM05D005541 ORTHO05D006875 2.1e-78 296.6 281 52.7
CiPaw.04G177400 Carya illinoinensis HOM05D005541 ORTHO05D006875 2.8e-78 296.2 290 53.4
ECA240G1064 Erigeron canadensis HOM05D005541 ORTHO05D006875 2.8e-78 296.2 293 52.9
MD02G1018200 Malus domestica HOM05D005541 ORTHO05D006875 2.8e-78 296.2 258 57.4
MD15G1162200 Malus domestica HOM05D005541 ORTHO05D006875 3.6e-78 295.8 260 56.5
PGR142G4414 Punica granatum HOM05D005541 ORTHO05D006875 4.7e-78 295.4 284 51.8
QL02p090804 Quercus lobata HOM05D005541 ORTHO05D006875 4.7e-78 295.4 283 52.7
SGA_v2.0_scaffold45G17077 Striga asiatica HOM05D005541 ORTHO05D006875 1.1e-77 294.3 280 52.1
Duzib168G0734 Durio zibethinus HOM05D005541 ORTHO05D006875 1.4e-77 293.9 271 54.2
Gohir.A13G202000 Gossypium hirsutum HOM05D005541 ORTHO05D006875 1.4e-77 293.9 269 53.5
Glyma.15G198100 Glycine max HOM05D005541 ORTHO05D006875 1.8e-77 293.5 257 56.0
Cfa002261 Carpinus fangiana HOM05D005541 ORTHO05D006875 3.1e-77 292.7 283 53.0
Glyma.09G091600 Glycine max HOM05D005541 ORTHO05D006875 6.9e-77 291.6 280 52.9
Gohir.D13G207800 Gossypium hirsutum HOM05D005541 ORTHO05D006875 6.9e-77 291.6 268 53.4
Rhsim03G0253300 Rhododendron simsii HOM05D005541 ORTHO05D006875 6.9e-77 291.6 280 52.1
RcHm_v2.0_Chr2g0087061 Rosa chinensis HOM05D005541 ORTHO05D006875 6.9e-77 291.6 280 52.1
HanXRQChr09g0241861 Helianthus annuus HOM05D005541 ORTHO05D006875 9.0e-77 291.2 281 51.2
Migut.J01236 Erythranthe guttata HOM05D005541 ORTHO05D006875 1.2e-76 290.8 281 50.9
Atru.chr7.2014 Acer truncatum HOM05D005541 ORTHO05D006875 1.5e-76 290.4 292 50.3
Gorai.013G236700 Gossypium raimondii HOM05D005541 ORTHO05D006875 1.5e-76 290.4 284 51.1
FvH4_1g02000 Fragaria vesca HOM05D005541 ORTHO05D006875 2.0e-76 290.0 262 54.2
MSTRG.6077 Avicennia marina HOM05D005541 ORTHO05D006875 2.6e-76 289.7 286 50.7
Potri.006G061600 Populus trichocarpa HOM05D005541 ORTHO05D006875 2.6e-76 289.7 284 51.1
Potri.018G118200 Populus trichocarpa HOM05D005541 ORTHO05D006875 7.6e-76 288.1 281 51.6
Duzib187G1717 Durio zibethinus HOM05D005541 ORTHO05D006875 9.9e-76 287.7 254 55.5
Cpa.g.sc46.69 Carica papaya HOM05D005541 ORTHO05D006875 2.9e-75 286.2 272 54.8
FAN28G0031 Fragaria x ananassa HOM05D005541 ORTHO05D006875 2.9e-75 286.2 262 53.4
PSO478G5201 Papaver somniferum HOM05D005541 ORTHO05D006875 2.9e-75 286.2 283 51.2
Peaxi162Scf00088g00520 Petunia axillaris HOM05D005541 ORTHO05D006875 2.9e-75 286.2 286 49.3
Psat1g021320 Pisum sativum HOM05D005541 ORTHO05D006875 2.9e-75 286.2 227 58.1
Lj6g0025347 Lotus japonicus HOM05D005541 ORTHO05D006875 3.8e-75 285.8 255 54.1
ATR0767G116 Amborella trichopoda HOM05D005541 ORTHO05D006875 1.4e-74 283.9 243 57.2
Medtr2g450740 Medicago truncatula HOM05D005541 ORTHO05D006875 1.9e-74 283.5 227 57.7
PSO017G3833 Papaver somniferum HOM05D005541 ORTHO05D006875 2.4e-74 283.1 283 50.5
Sabra06G0044200 Salix brachista HOM05D005541 ORTHO05D006875 3.2e-74 282.7 284 50.0
Sopen07g003450 Solanum pennellii HOM05D005541 ORTHO05D006875 3.2e-74 282.7 271 48.7
VMungo1309G2820 Vigna mungo HOM05D005541 ORTHO05D006875 3.2e-74 282.7 262 52.3
arahy.Tifrunner.gnm1.ann1.9T6TW9 Arachis hypogaea HOM05D005541 ORTHO05D006875 4.2e-74 282.3 254 53.1
arahy.Tifrunner.gnm1.ann1.H1LUDS Arachis hypogaea HOM05D005541 ORTHO05D006875 4.2e-74 282.3 254 53.1
Prupe.7G257600 Prunus persica HOM05D005541 ORTHO05D006875 4.2e-74 282.3 278 52.2
FAN26G0160 Fragaria x ananassa HOM05D005541 ORTHO05D006875 5.4e-74 282.0 292 50.7
Lalb_Chr11g0073101 Lupinus albus HOM05D005541 ORTHO05D006875 5.4e-74 282.0 246 53.7
Solyc07g007380.4 Solanum lycopersicum HOM05D005541 ORTHO05D006875 5.4e-74 282.0 271 49.1
AUR62011221 Chenopodium quinoa HOM05D005541 ORTHO05D006875 7.1e-74 281.6 276 51.1
Nitab4.5_0002845g0020 Nicotiana tabacum HOM05D005541 ORTHO05D006875 9.3e-74 281.2 283 48.4
Sed0021107 Sechium edule HOM05D005541 ORTHO05D006875 1.6e-73 280.4 273 52.4
CAN.G1281.6 Capsicum annuum HOM05D005541 ORTHO05D006875 2.1e-73 280.0 281 50.2
DCAR_009345 Daucus carota HOM05D005541 ORTHO05D006875 2.1e-73 280.0 282 52.5
PGSC0003DMG400030689 Solanum tuberosum HOM05D005541 ORTHO05D006875 2.1e-73 280.0 263 49.8
AUR62020012 Chenopodium quinoa HOM05D005541 ORTHO05D006875 6.0e-73 278.5 249 53.8
Phvul.009G212200 Phaseolus vulgaris HOM05D005541 ORTHO05D006875 6.0e-73 278.5 262 52.3
Sed0001591 Sechium edule HOM05D005541 ORTHO05D006875 6.0e-73 278.5 273 51.3
ClCG06G011880 Citrullus lanatus HOM05D005541 ORTHO05D006875 7.8e-73 278.1 272 51.8
Nitab4.5_0002286g0050 Nicotiana tabacum HOM05D005541 ORTHO05D006875 1.0e-72 277.7 283 48.4
Sc08g0006020 Simmondsia chinensis HOM05D005541 ORTHO05D006875 3.0e-72 276.2 252 52.0
Gohir.D08G101500 Gossypium hirsutum HOM05D005541 ORTHO05D006875 8.7e-72 274.6 283 50.2
Oeu012222.1 Olea europaea HOM05D005541 ORTHO05D006875 1.1e-71 274.2 293 47.1
CDE02G2611 Ceratophyllum demersum HOM05D005541 ORTHO05D006875 1.5e-71 273.9 285 49.1
Ca_03100_v3 Cicer arietinum L. HOM05D005541 ORTHO05D006875 9.6e-71 271.2 228 57.5
Lalb_Chr08g0233581 Lupinus albus HOM05D005541 ORTHO05D006875 1.6e-70 270.4 275 48.7
MELO3C010277.2 Cucumis melo HOM05D005541 ORTHO05D006875 6.2e-70 268.5 274 50.7
CsaV3_1G028340 Cucumis sativus L. HOM05D005541 ORTHO05D006875 1.4e-69 267.3 274 50.7
MBI15_g25760_MAGBIO Magnolia biondii HOM05D005541 ORTHO05D006875 3.4e-68 262.7 376 40.4
Hund09308 Selenicereus undatus HOM05D005541 ORTHO05D006875 4.5e-68 262.3 264 48.5
Eucgr.C00480 Eucalyptus grandis HOM05D005541 ORTHO05D006875 1.7e-67 260.4 285 48.8
Lj7A439T20 Lonicera japonica HOM05D005541 ORTHO05D006875 2.9e-67 259.6 233 54.9
THA.LOC104815290 Tarenaya hassleriana HOM05D005541 ORTHO05D006875 2.9e-67 259.6 262 49.2
COL.COLO4_33365 Corchorus olitorius HOM05D005541 ORTHO05D006875 4.9e-67 258.8 212 57.5
THA.LOC104808948 Tarenaya hassleriana HOM05D005541 ORTHO05D006875 7.1e-66 255.0 272 47.1
Sp4g15930 Schrenkiella parvula HOM05D005541 ORTHO05D006875 1.0e-64 251.1 265 45.3
BcaC02g11442 Brassica carinata HOM05D005541 ORTHO05D006875 1.8e-64 250.4 265 45.7
C04p15500 Brassica napus HOM05D005541 ORTHO05D006875 1.8e-64 250.4 265 45.7
BolC4t23121H Brassica oleracea HOM05D005541 ORTHO05D006875 1.8e-64 250.4 265 45.7
Dinv41444 Davidia involucrata HOM05D005541 ORTHO05D006875 1.8e-64 250.4 222 53.6
A05p11950 Brassica napus HOM05D005541 ORTHO05D006875 2.3e-64 250.0 265 45.3
BraA05t20138Z Brassica rapa HOM05D005541 ORTHO05D006875 3.0e-64 249.6 265 45.3
Pp3c2_6810 Physcomitrium patens HOM05D005541 ORTHO05D006875 5.1e-64 248.8 291 44.3
BcaB02g10581 Brassica carinata HOM05D005541 ORTHO05D006875 8.7e-64 248.1 259 46.3
AT5G35080 Arabidopsis thaliana HOM05D005541 ORTHO05D006875 5.6e-63 245.4 278 44.2
BolC3t14579H Brassica oleracea HOM05D005541 ORTHO05D006875 9.6e-63 244.6 261 47.1
Gohir.D13G208000 Gossypium hirsutum HOM05D005541 ORTHO05D006875 2.8e-62 243.0 224 53.1
BcaB01g03929 Brassica carinata HOM05D005541 ORTHO05D006875 3.7e-62 242.7 279 44.1
CSS0024399 Camellia sinensis var. sinensis HOM05D005541 ORTHO05D006875 4.8e-62 242.3 244 51.6
C03p21960 Brassica napus HOM05D005541 ORTHO05D006875 1.8e-61 240.4 280 44.6
Carub.0007s3085 Capsella rubella HOM05D005541 ORTHO05D006875 4.0e-61 239.2 249 47.8
Os06g0644800 Oryza sativa ssp. japonica HOM05D005541 ORTHO05D006875 2.0e-60 236.9 151 74.2
Aa31LG10G11810 Aethionema arabicum HOM05D005541 ORTHO05D006875 5.8e-60 235.3 243 47.3
EL10Ac8g18781 Beta vulgaris HOM05D005541 ORTHO05D006875 7.6e-60 235.0 214 54.2
Ah.09g224130 Amaranthus hybridus HOM05D005541 ORTHO05D006875 1.3e-59 234.2 225 49.8
Haze_25444 Corylus avellana HOM05D005541 ORTHO05D006875 2.2e-59 233.4 256 48.4
Thhalv10002066m.g Eutrema salsugineum HOM05D005541 ORTHO05D006875 6.4e-59 231.9 265 41.9
Pp3c1_27810 Physcomitrium patens HOM05D005541 ORTHO05D006875 4.2e-58 229.2 248 45.2
Actinidia38706 Actinidia chinensis HOM05D005541 ORTHO05D006875 2.1e-57 226.9 214 51.9
FAN19G0623 Fragaria x ananassa HOM05D005541 ORTHO05D006875 6.7e-56 221.9 180 58.3
Mapoly0020s0022 Marchantia polymorpha HOM05D005541 ORTHO05D006875 4.3e-55 219.2 296 44.3
CARHR217140 Cardamine hirsuta HOM05D005541 ORTHO05D006875 1.3e-54 217.6 226 46.0
SMO174G0227 Selaginella moellendorffii HOM05D005541 ORTHO05D006875 5.3e-53 212.2 227 46.3
BcaC01g05834 Brassica carinata HOM05D005541 ORTHO05D006875 2.2e-51 206.8 212 45.3
Oeu028018.1 Olea europaea HOM05D005541 ORTHO05D006875 4.5e-44 182.6 229 44.5
unitig_0.g507 Utricularia gibba HOM05D005541 ORTHO05D006875 2.2e-43 180.3 156 53.8
AagrBONN_evm.TU.Sc2ySwM_228.2742 Anthoceros agrestis HOM05D005541 ORTHO05D006875 8.5e-43 178.3 226 40.7
CBR_g45403 Chara braunii HOM05D005541 ORTHO05D006875 4.2e-34 149.4 288 35.4
Oeu028135.2 Olea europaea HOM05D005541 ORTHO05D006875 1.1e-29 134.8 168 46.4
MCO11G854 Micromonas commoda HOM05D005541 ORTHO05D006875 1.4e-29 134.4 247 35.2
SEGI_36543 Sequoiadendron giganteum HOM05D005541 ORTHO05D006875 3.8e-27 126.3 160 41.2
Ca_27153_v3 Cicer arietinum L. HOM05D005541 ORTHO05D006875 1.7e-19 100.9 96 53.1
Cre06.g257900 Chlamydomonas reinhardtii HOM05D005541 ORTHO05D006875 8.5e-19 98.6 174 34.5
PRCOL_00001292 Prasinoderma coloniale HOM05D005541 ORTHO05D006875 1.8e-16 90.9 188 33.5
Cfa024351 Carpinus fangiana HOM05D005541 ORTHO05D124727 5.2e-08 62.8 200 28.0
HanXRQChr03g0068961 Helianthus annuus HOM05D005541 ORTHO05D006875 1.3e-06 58.2 48 56.2
unitig_0.g506 Utricularia gibba HOM05D001054 ORTHO05D007110 1.7e-06 57.8 84 39.3
RcHm_v2.0_Chr1g0314561 Rosa chinensis HOM05D005541 ORTHO05D006875 8.3e-06 55.5 69 42.0


User provided reference genes

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