Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb026370 Zea mays HOM05D003465 ORTHO05D004034 4.3e-172 607.8 294 100.0
Zm00001eb026360 Zea mays HOM05D003465 ORTHO05D004034 1.1e-103 380.6 210 90.0
Zm00001eb176710 Zea mays HOM05D003465 ORTHO05D004034 2.8e-94 349.4 286 67.5
Os08g0472600 Oryza sativa ssp. japonica HOM05D003465 ORTHO05D004034 4.6e-81 305.4 280 63.9
Nn1g04851 Nelumbo nucifera HOM05D003465 ORTHO05D004034 4.6e-65 252.3 271 54.2
GSVIVG01031736001 Vitis vinifera HOM05D003465 ORTHO05D004034 1.0e-64 251.1 267 53.6
Dinv42161 Davidia involucrata HOM05D003465 ORTHO05D004034 3.9e-64 249.2 271 52.4
Glyma.02G131900 Glycine max HOM05D003465 ORTHO05D004034 5.6e-63 245.4 266 52.3
Dinv15715 Davidia involucrata HOM05D003465 ORTHO05D004034 7.3e-63 245.0 265 52.8
Cfa004534 Carpinus fangiana HOM05D003465 ORTHO05D004034 9.6e-63 244.6 284 51.4
Eucgr.I01147 Eucalyptus grandis HOM05D003465 ORTHO05D004034 1.3e-62 244.2 288 51.0
Nitab4.5_0002543g0080 Nicotiana tabacum HOM05D003465 ORTHO05D004034 1.3e-62 244.2 271 51.3
Potri.009G101500 Populus trichocarpa HOM05D003465 ORTHO05D004034 2.1e-62 243.4 282 51.4
CiPaw.05G007600 Carya illinoinensis HOM05D003465 ORTHO05D004034 3.6e-62 242.7 296 50.7
Haze_10093 Corylus avellana HOM05D003465 ORTHO05D004034 3.6e-62 242.7 265 53.6
CsaV3_7G008560 Cucumis sativus L. HOM05D003465 ORTHO05D004034 4.8e-62 242.3 267 52.4
Phvul.003G292000 Phaseolus vulgaris HOM05D003465 ORTHO05D004034 4.8e-62 242.3 266 52.3
PGR142G0601 Punica granatum HOM05D003465 ORTHO05D004034 4.8e-62 242.3 260 55.0
CANSAT25G3338 Cannabis sativa HOM05D003465 ORTHO05D004034 1.8e-61 240.4 269 53.5
CANSAT25G3355 Cannabis sativa HOM05D003465 ORTHO05D004034 1.8e-61 240.4 269 53.5
Sabra09G0077300 Salix brachista HOM05D003465 ORTHO05D004034 1.8e-61 240.4 281 50.2
QL11p035314 Quercus lobata HOM05D003465 ORTHO05D004034 2.4e-61 240.0 265 51.7
Hma1.2p1_0474F.1_g160420 Hydrangea macrophylla HOM05D003465 ORTHO05D004034 3.1e-61 239.6 269 52.0
Nitab4.5_0007480g0040 Nicotiana tabacum HOM05D003465 ORTHO05D004034 3.1e-61 239.6 265 54.3
Cpa.g.sc62.7 Carica papaya HOM05D003465 ORTHO05D004034 4.0e-61 239.2 302 48.3
Sed0008599 Sechium edule HOM05D003465 ORTHO05D004034 5.3e-61 238.8 269 52.4
Ciclev10028212m.g Citrus clementina HOM05D003465 ORTHO05D004034 6.9e-61 238.4 293 49.1
Rhsim05G0084700 Rhododendron simsii HOM05D003465 ORTHO05D004034 1.2e-60 237.7 282 51.1
Sc18g0004110 Simmondsia chinensis HOM05D003465 ORTHO05D004034 1.2e-60 237.7 274 52.2
Glyma.07G212900 Glycine max HOM05D003465 ORTHO05D004034 1.5e-60 237.3 268 51.1
Lalb_Chr16g0384751 Lupinus albus HOM05D003465 ORTHO05D004034 1.5e-60 237.3 275 50.9
Peaxi162Scf00003g02335 Petunia axillaris HOM05D003465 ORTHO05D004034 1.5e-60 237.3 303 48.2
TAR625G0342 Trochodendron aralioides HOM05D003465 ORTHO05D004034 2.0e-60 236.9 274 50.7
Lsat_1_v5_gn_7_86701 Lactuca sativa HOM05D003465 ORTHO05D004034 2.6e-60 236.5 312 46.8
CSS0040219 Camellia sinensis var. sinensis HOM05D003465 ORTHO05D004034 3.4e-60 236.1 267 51.3
Hund06174 Selenicereus undatus HOM05D003465 ORTHO05D004034 3.4e-60 236.1 265 50.6
TPR.G25433 Trifolium pratense HOM05D003465 ORTHO05D004034 3.4e-60 236.1 265 52.1
CAN.G1707.1 Capsicum annuum HOM05D003465 ORTHO05D004034 4.5e-60 235.7 304 47.4
Ca_18690_v3 Cicer arietinum L. HOM05D003465 ORTHO05D004034 4.5e-60 235.7 293 50.9
RcHm_v2.0_Chr6g0257471 Rosa chinensis HOM05D003465 ORTHO05D004034 4.5e-60 235.7 265 51.3
Gohir.A13G040700 Gossypium hirsutum HOM05D003465 ORTHO05D004034 5.8e-60 235.3 280 50.7
Sopen10g021410 Solanum pennellii HOM05D003465 ORTHO05D004034 5.8e-60 235.3 268 50.7
Cc02_g18830 Coffea canephora HOM05D003465 ORTHO05D004034 7.6e-60 235.0 264 50.8
HanXRQChr04g0128181 Helianthus annuus HOM05D003465 ORTHO05D004034 7.6e-60 235.0 273 49.8
Thecc.02G101300 Theobroma cacao HOM05D003465 ORTHO05D004034 7.6e-60 235.0 281 50.5
COL.COLO4_32649 Corchorus olitorius HOM05D003465 ORTHO05D004034 9.9e-60 234.6 250 53.6
FAN15G0414 Fragaria x ananassa HOM05D003465 ORTHO05D004034 9.9e-60 234.6 280 50.4
FvH4_2g05930 Fragaria vesca HOM05D003465 ORTHO05D004034 1.3e-59 234.2 280 50.4
MD10G1094900 Malus domestica HOM05D003465 ORTHO05D004034 1.3e-59 234.2 265 52.8
AUR62011449 Chenopodium quinoa HOM05D003465 ORTHO05D004034 1.7e-59 233.8 273 50.2
FAN20G2338 Fragaria x ananassa HOM05D003465 ORTHO05D004034 2.2e-59 233.4 281 50.9
Gorai.013G044300 Gossypium raimondii HOM05D003465 ORTHO05D004034 2.2e-59 233.4 270 51.1
arahy.Tifrunner.gnm1.ann1.5RT47R Arachis hypogaea HOM05D003465 ORTHO05D004034 2.9e-59 233.0 256 52.3
arahy.Tifrunner.gnm1.ann1.PPSU1J Arachis hypogaea HOM05D003465 ORTHO05D004034 2.9e-59 233.0 256 52.3
Lj4g0026387 Lotus japonicus HOM05D003465 ORTHO05D004034 2.9e-59 233.0 269 52.0
unitig_744.g24234 Utricularia gibba HOM05D003465 ORTHO05D004034 2.9e-59 233.0 252 54.0
EL10Ac9g21840 Beta vulgaris HOM05D003465 ORTHO05D004034 6.4e-59 231.9 272 50.7
MBI03_g13465_MAGBIO Magnolia biondii HOM05D003465 ORTHO05D004034 8.4e-59 231.5 271 49.4
Medtr4g086010 Medicago truncatula HOM05D003465 ORTHO05D004034 8.4e-59 231.5 265 51.3
SGA_v2.0_scaffold90G27641 Striga asiatica HOM05D003465 ORTHO05D004034 8.4e-59 231.5 306 47.1
Solyc01g108110.4 Solanum lycopersicum HOM05D003465 ORTHO05D004034 1.9e-58 230.3 274 47.8
Sopen01g050340 Solanum pennellii HOM05D003465 ORTHO05D004034 3.2e-58 229.6 274 47.8
TAR381G0440 Trochodendron aralioides HOM05D003465 ORTHO05D004034 5.4e-58 228.8 269 49.4
AUR62016610 Chenopodium quinoa HOM05D003465 ORTHO05D004034 1.2e-57 227.6 268 50.4
vmacro19503 Vaccinium macrocarpon HOM05D003465 ORTHO05D004034 1.6e-57 227.3 272 50.4
MD05G1081600 Malus domestica HOM05D003465 ORTHO05D004034 2.1e-57 226.9 265 52.5
CDE08G1667 Ceratophyllum demersum HOM05D003465 ORTHO05D004034 2.7e-57 226.5 252 50.4
Gohir.D12G024600 Gossypium hirsutum HOM05D003465 ORTHO05D004034 3.5e-57 226.1 255 52.5
Oeu010591.2 Olea europaea HOM05D003465 ORTHO05D004034 3.5e-57 226.1 247 51.4
TWI31G0519 Tripterygium wilfordii HOM05D003465 ORTHO05D004034 3.5e-57 226.1 287 47.0
ATR0009G025 Amborella trichopoda HOM05D003465 ORTHO05D004034 4.6e-57 225.7 267 47.9
TWI79G0501 Tripterygium wilfordii HOM05D003465 ORTHO05D004034 4.6e-57 225.7 284 46.8
Migut.B00352 Erythranthe guttata HOM05D003465 ORTHO05D004034 1.0e-56 224.6 280 49.3
Psat7g125480 Pisum sativum HOM05D003465 ORTHO05D004034 1.0e-56 224.6 266 49.2
Gorai.008G024900 Gossypium raimondii HOM05D003465 ORTHO05D004034 1.3e-56 224.2 255 52.2
Lalb_Chr05g0219201 Lupinus albus HOM05D003465 ORTHO05D004034 2.3e-56 223.4 259 50.2
Gohir.A12G024000 Gossypium hirsutum HOM05D003465 ORTHO05D004034 3.0e-56 223.0 256 52.0
Sed0016548 Sechium edule HOM05D003465 ORTHO05D004034 3.0e-56 223.0 263 50.2
Duzib052G0281 Durio zibethinus HOM05D003465 ORTHO05D004034 5.1e-56 222.2 269 49.4
PSO541G4994 Papaver somniferum HOM05D003465 ORTHO05D004034 5.1e-56 222.2 267 49.1
PGSC0003DMG400025789 Solanum tuberosum HOM05D003465 ORTHO05D004034 8.7e-56 221.5 274 47.1
PSO675G3714 Papaver somniferum HOM05D003465 ORTHO05D004034 1.1e-55 221.1 267 48.7
DCAR_022021 Daucus carota HOM05D003465 ORTHO05D004034 1.5e-55 220.7 280 47.1
FAN27G0960 Fragaria x ananassa HOM05D003465 ORTHO05D004034 1.5e-55 220.7 306 47.1
Lalb_Chr09g0328341 Lupinus albus HOM05D003465 ORTHO05D004034 1.5e-55 220.7 254 49.2
Lj9C358T1 Lonicera japonica HOM05D003465 ORTHO05D004034 2.5e-55 219.9 265 49.4
ClCG05G010040 Citrullus lanatus HOM05D003465 ORTHO05D004034 3.3e-55 219.5 267 48.7
BcaB07g33651 Brassica carinata HOM05D003465 ORTHO05D004034 4.3e-55 219.2 262 49.2
Nitab4.5_0003503g0030 Nicotiana tabacum HOM05D003465 ORTHO05D004034 5.6e-55 218.8 286 47.2
Sp1g36600 Schrenkiella parvula HOM05D003465 ORTHO05D004034 7.4e-55 218.4 289 48.1
Nn5g30308 Nelumbo nucifera HOM05D003465 ORTHO05D004034 9.6e-55 218.0 268 47.4
A06p03720 Brassica napus HOM05D003465 ORTHO05D004034 2.8e-54 216.5 289 46.0
Hund00338 Selenicereus undatus HOM05D003465 ORTHO05D004034 2.8e-54 216.5 269 49.4
Aqoxy6G01316 Aquilegia oxysepala HOM05D003465 ORTHO05D004034 3.6e-54 216.1 289 43.9
Lj5A209T84 Lonicera japonica HOM05D003465 ORTHO05D004034 3.6e-54 216.1 266 47.0
Actinidia27958 Actinidia chinensis HOM05D003465 ORTHO05D004034 4.8e-54 215.7 249 51.4
BraA06t23577Z Brassica rapa HOM05D003465 ORTHO05D004034 6.2e-54 215.3 262 48.1
Thhalv10011402m.g Eutrema salsugineum HOM05D003465 ORTHO05D004034 6.2e-54 215.3 289 47.1
AL1G57150 Arabidopsis lyrata HOM05D003465 ORTHO05D004034 1.1e-53 214.5 289 47.8
MELO3C019516.2 Cucumis melo HOM05D003465 ORTHO05D004034 1.1e-53 214.5 287 46.7
CDE06G1279 Ceratophyllum demersum HOM05D003465 ORTHO05D004034 1.4e-53 214.2 266 47.4
ECA236G3626 Erigeron canadensis HOM05D004900 ORTHO05D006392 1.4e-53 214.2 202 57.4
THA.LOC104798796 Tarenaya hassleriana HOM05D003465 ORTHO05D004034 1.8e-53 213.8 276 47.5
AT3G19280 Arabidopsis thaliana HOM05D003465 ORTHO05D004034 5.3e-53 212.2 289 45.3
Carub.0001s3892 Capsella rubella HOM05D003465 ORTHO05D004034 5.3e-53 212.2 252 50.0
AT1G49710 Arabidopsis thaliana HOM05D003465 ORTHO05D004034 6.9e-53 211.8 277 47.7
BcaC08g43160 Brassica carinata HOM05D003465 ORTHO05D004034 6.9e-53 211.8 280 46.4
C06p04480 Brassica napus HOM05D003465 ORTHO05D004034 6.9e-53 211.8 280 46.4
BolC6t35578H Brassica oleracea HOM05D003465 ORTHO05D004034 6.9e-53 211.8 280 46.4
HanXRQChr16g0497621 Helianthus annuus HOM05D003465 ORTHO05D004034 6.9e-53 211.8 200 58.5
AL3G32680 Arabidopsis lyrata HOM05D003465 ORTHO05D004034 9.0e-53 211.5 280 45.4
Solyc10g050230.3 Solanum lycopersicum HOM05D003465 ORTHO05D004034 1.2e-52 211.1 193 57.5
CsaV3_3G018500 Cucumis sativus L. HOM05D003465 ORTHO05D004034 2.0e-52 210.3 272 47.8
Nitab4.5_0003080g0100 Nicotiana tabacum HOM05D003465 ORTHO05D004034 2.0e-52 210.3 267 49.4
Lsat_1_v5_gn_5_112540 Lactuca sativa HOM05D003465 ORTHO05D004034 2.6e-52 209.9 261 46.7
Sp3g17360 Schrenkiella parvula HOM05D003465 ORTHO05D004034 3.4e-52 209.5 250 49.6
BcaB04g17304 Brassica carinata HOM05D003465 ORTHO05D004034 1.3e-51 207.6 252 48.4
THA.LOC104803455 Tarenaya hassleriana HOM05D003465 ORTHO05D004034 1.7e-51 207.2 252 49.6
Carub.0003s1911 Capsella rubella HOM05D003465 ORTHO05D004034 2.2e-51 206.8 262 46.6
SEGI_41455 Sequoiadendron giganteum HOM05D003465 ORTHO05D004034 2.9e-51 206.5 278 45.0
CAN.G1041.31 Capsicum annuum HOM05D003465 ORTHO05D004034 3.8e-51 206.1 288 44.8
SHI05356 Sapria himalayana HOM05D003465 ORTHO05D004034 1.9e-50 203.8 268 45.1
A08p03730 Brassica napus HOM05D003465 ORTHO05D004034 2.4e-50 203.4 281 45.9
Aa31LG10G4340 Aethionema arabicum HOM05D003465 ORTHO05D004034 3.2e-50 203.0 282 45.0
SalBow6G3816 Salvia bowleyana HOM05D003465 ORTHO05D004034 4.2e-50 202.6 324 42.3
VMungo0251G1706 Vigna mungo HOM05D003465 ORTHO05D004034 4.2e-50 202.6 238 48.7
ClCG02G005960 Citrullus lanatus HOM05D003465 ORTHO05D004034 5.5e-50 202.2 311 43.7
BolC8t47184H Brassica oleracea HOM05D003465 ORTHO05D004034 7.1e-50 201.8 283 45.2
BcaC07g37019 Brassica carinata HOM05D003465 ORTHO05D004034 1.6e-49 200.7 252 47.6
C08p03870 Brassica napus HOM05D003465 ORTHO05D004034 1.6e-49 200.7 252 47.6
Gohir.D01G007200 Gossypium hirsutum HOM05D003465 ORTHO05D004034 1.6e-49 200.7 274 46.4
Gorai.002G008200 Gossypium raimondii HOM05D003465 ORTHO05D004034 1.6e-49 200.7 274 46.4
BraA08t32401Z Brassica rapa HOM05D003465 ORTHO05D004034 3.5e-49 199.5 281 45.9
Peaxi162Scf00016g01955 Petunia axillaris HOM05D003465 ORTHO05D004034 3.5e-49 199.5 171 61.4
PGSC0003DMG401006223 Solanum tuberosum HOM05D003465 ORTHO05D004034 1.0e-48 198.0 237 48.1
A05p30320 Brassica napus HOM05D003465 ORTHO05D004034 2.3e-48 196.8 265 46.8
BraA05t21870Z Brassica rapa HOM05D003465 ORTHO05D004034 2.3e-48 196.8 265 46.8
Ah.01g006670 Amaranthus hybridus HOM05D003465 ORTHO05D004034 3.0e-48 196.4 145 71.0
Duzib132G0231 Durio zibethinus HOM05D003465 ORTHO05D004034 3.0e-48 196.4 134 73.1
BcaC05g28503 Brassica carinata HOM05D003465 ORTHO05D004034 5.1e-48 195.7 265 46.8
C05p45870 Brassica napus HOM05D003465 ORTHO05D004034 5.1e-48 195.7 199 53.3
BolC5t33305H Brassica oleracea HOM05D003465 ORTHO05D004034 5.1e-48 195.7 265 46.8
Gohir.A01G007100 Gossypium hirsutum HOM05D003465 ORTHO05D004034 6.7e-48 195.3 274 45.6
Actinidia00437 Actinidia chinensis HOM05D003465 ORTHO05D004034 1.4e-45 187.6 127 76.4
Atru.chr5.2693 Acer truncatum HOM05D003465 ORTHO05D004034 2.2e-43 180.3 137 70.1
DCAR_019244 Daucus carota HOM05D003465 ORTHO05D004034 1.1e-42 177.9 144 63.9
Zm00001eb038040 Zea mays HOM05D003465 ORTHO05D004034 1.1e-42 177.9 104 85.6
Prupe.8G126200 Prunus persica HOM05D003465 ORTHO05D004034 1.4e-42 177.6 111 79.3
MELO3C018453.2 Cucumis melo HOM05D003465 ORTHO05D004034 1.9e-42 177.2 111 79.3
CARHR039740 Cardamine hirsuta HOM05D003465 ORTHO05D004034 1.6e-41 174.1 111 78.4
DCAR_029059 Daucus carota HOM05D003465 ORTHO05D004034 7.9e-41 171.8 167 57.5
Mapoly0164s0009 Marchantia polymorpha HOM05D003465 ORTHO05D004034 3.9e-40 169.5 276 39.5
CARHR094680 Cardamine hirsuta HOM05D003465 ORTHO05D004034 1.1e-39 167.9 111 76.6
Lsat_1_v5_gn_4_10380 Lactuca sativa HOM05D003465 ORTHO05D004034 3.3e-39 166.4 125 65.6
Gohir.D13G039400 Gossypium hirsutum HOM05D003465 ORTHO05D004034 1.4e-37 161.0 104 77.9
SMO367G1219 Selaginella moellendorffii HOM05D003465 ORTHO05D004034 5.3e-37 159.1 131 60.3
AagrBONN_evm.TU.Sc2ySwM_228.1554 Anthoceros agrestis HOM05D003465 ORTHO05D004034 1.0e-35 154.8 219 42.5
PSO017G1556 Papaver somniferum HOM05D003465 ORTHO05D004034 1.9e-34 150.6 103 68.9
Pp3c11_22030 Physcomitrium patens HOM05D003465 ORTHO05D004034 5.5e-34 149.1 192 46.9
Oeu025579.1 Olea europaea HOM05D003465 ORTHO05D004034 1.2e-33 147.9 256 39.5
CSS0046899 Camellia sinensis var. sinensis HOM05D003465 ORTHO05D004034 3.6e-33 146.4 265 39.2
PSO017G2240 Papaver somniferum HOM05D003465 ORTHO05D004034 6.1e-33 145.6 102 67.6
PSO478G1926 Papaver somniferum HOM05D003465 ORTHO05D004034 6.1e-33 145.6 103 67.0
PSO339G3128 Papaver somniferum HOM05D003465 ORTHO05D004034 2.5e-31 140.2 101 65.3
PSO017G6777 Papaver somniferum HOM05D003465 ORTHO05D004034 9.7e-31 138.3 100 66.0
PSO339G2242 Papaver somniferum HOM05D003465 ORTHO05D004034 9.7e-31 138.3 103 63.1
AL1G57120 Arabidopsis lyrata HOM05D003465 ORTHO05D004034 2.8e-30 136.7 136 56.6
CBR_g39363 Chara braunii HOM05D003465 ORTHO05D004034 2.8e-30 136.7 131 51.9
PSO357G0329 Papaver somniferum HOM05D003465 ORTHO05D004034 4.8e-30 136.0 103 62.1
CBR_g30510 Chara braunii HOM05D003465 ORTHO05D004034 3.1e-29 133.3 131 52.7
Manes.07G078000 Manihot esculenta HOM05D003465 ORTHO05D004034 2.5e-26 123.6 83 73.5
HPP92_013117 Vanilla planifolia HOM05D003465 ORTHO05D004034 3.3e-23 113.2 78 67.9
Thhalv10022257m.g Eutrema salsugineum HOM05D003465 ORTHO05D004034 7.7e-20 102.1 234 36.3
CBR_g40329 Chara braunii HOM05D003465 ORTHO05D004034 2.2e-14 84.0 119 39.5
Psat1g011840 Pisum sativum HOM05D003465 ORTHO05D004034 2.1e-09 67.4 54 57.4
Zm00001eb202280 Zea mays HOM05D003465 ORTHO05D443292 2.0e-07 60.8 73 49.3
Gohir.D13G039450 Gossypium hirsutum HOM05D003465 ORTHO05D004034 2.6e-07 60.5 150 31.3


User provided reference genes

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