Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb025510 Zea mays HOM05D006475 ORTHO05D007969 1.3e-96 357.1 291 100.0
Os10g0580700 Oryza sativa ssp. japonica HOM05D006475 ORTHO05D007969 2.1e-38 163.7 264 77.7
HPP92_021118 Vanilla planifolia HOM05D006475 ORTHO05D007969 3.3e-23 113.2 233 63.9
Prupe.5G019900 Prunus persica HOM05D006475 ORTHO05D007969 2.8e-22 110.2 236 64.0
PGR031G1524 Punica granatum HOM05D006475 ORTHO05D007969 2.8e-22 110.2 230 64.3
SalBow8G0939 Salvia bowleyana HOM05D006475 ORTHO05D007969 2.8e-22 110.2 237 62.9
AUR62007413 Chenopodium quinoa HOM05D006475 ORTHO05D007969 6.2e-22 109.0 234 61.5
Lj8A334T74 Lonicera japonica HOM05D006475 ORTHO05D007969 8.1e-22 108.6 236 64.4
SGA_v2.0_scaffold144G35881 Striga asiatica HOM05D006475 ORTHO05D007969 1.1e-21 108.2 230 66.1
Thecc.01G139200 Theobroma cacao HOM05D006475 ORTHO05D007969 1.1e-21 108.2 233 64.8
THA.LOC104812889 Tarenaya hassleriana HOM05D006475 ORTHO05D007969 1.4e-21 107.8 231 66.7
Nn3g19252 Nelumbo nucifera HOM05D006475 ORTHO05D007969 6.9e-21 105.5 241 60.6
Potri.003G103400 Populus trichocarpa HOM05D006475 ORTHO05D007969 6.9e-21 105.5 238 62.6
AL7G34940 Arabidopsis lyrata HOM05D006475 ORTHO05D007969 9.0e-21 105.1 230 63.9
Ah.12g056010 Amaranthus hybridus HOM05D006475 ORTHO05D007969 1.2e-20 104.8 236 63.1
FAN08G1612 Fragaria x ananassa HOM05D006475 ORTHO05D007969 2.0e-20 104.0 234 63.7
RcHm_v2.0_Chr7g0213461 Rosa chinensis HOM05D006475 ORTHO05D007969 2.0e-20 104.0 235 63.4
Actinidia14740 Actinidia chinensis HOM05D006475 ORTHO05D007969 3.4e-20 103.2 237 62.4
Cfa012603 Carpinus fangiana HOM05D006475 ORTHO05D007969 4.5e-20 102.8 237 62.0
Duzib187G1769 Durio zibethinus HOM05D006475 ORTHO05D007969 4.5e-20 102.8 232 63.8
CDE11G0189 Ceratophyllum demersum HOM05D006475 ORTHO05D007969 5.8e-20 102.4 234 60.7
FvH4_5g24000 Fragaria vesca HOM05D006475 ORTHO05D007969 5.8e-20 102.4 234 63.7
FAN13G3229 Fragaria x ananassa HOM05D006475 ORTHO05D007969 5.8e-20 102.4 234 64.5
AT4G19150 Arabidopsis thaliana HOM05D006475 ORTHO05D007969 7.6e-20 102.1 67 76.1
EL10Ac5g11923 Beta vulgaris HOM05D006475 ORTHO05D007969 7.6e-20 102.1 67 71.6
C01p13140 Brassica napus HOM05D006475 ORTHO05D007969 9.9e-20 101.7 67 74.6
FAN18G1960 Fragaria x ananassa HOM05D006475 ORTHO05D007969 9.9e-20 101.7 234 63.7
Potri.001G130500 Populus trichocarpa HOM05D006475 ORTHO05D007969 9.9e-20 101.7 239 61.5
MSTRG.1769 Avicennia marina HOM05D006475 ORTHO05D007969 1.3e-19 101.3 237 62.0
Glyma.09G214000 Glycine max HOM05D006475 ORTHO05D007969 1.7e-19 100.9 236 65.3
Actinidia18163 Actinidia chinensis HOM05D006475 ORTHO05D007969 2.2e-19 100.5 241 61.8
Glyma.01G149900 Glycine max HOM05D006475 ORTHO05D007969 2.2e-19 100.5 238 63.4
Manes.17G003100 Manihot esculenta HOM05D006475 ORTHO05D007969 2.2e-19 100.5 239 61.5
Sabra03G0070600 Salix brachista HOM05D006475 ORTHO05D007969 2.9e-19 100.1 235 60.9
unitig_0.g2207 Utricularia gibba HOM05D006475 ORTHO05D007969 2.9e-19 100.1 67 71.6
BcaNung04008 Brassica carinata HOM05D006475 ORTHO05D007969 3.8e-19 99.8 67 73.1
CARHR226020 Cardamine hirsuta HOM05D006475 ORTHO05D007969 3.8e-19 99.8 229 63.8
Ca_25099_v3 Cicer arietinum L. HOM05D006475 ORTHO05D007969 3.8e-19 99.8 242 62.8
FAN04G1597 Fragaria x ananassa HOM05D006475 ORTHO05D007969 3.8e-19 99.8 234 65.0
GSVIVG01022797001 Vitis vinifera HOM05D006475 ORTHO05D007969 3.8e-19 99.8 67 71.6
BcaC09g51436 Brassica carinata HOM05D006475 ORTHO05D007969 4.9e-19 99.4 233 63.5
BolC1t01287H Brassica oleracea HOM05D006475 ORTHO05D007969 4.9e-19 99.4 233 63.5
CSS0010448 Camellia sinensis var. sinensis HOM05D006475 ORTHO05D007969 4.9e-19 99.4 67 71.6
AUR62027319 Chenopodium quinoa HOM05D006475 ORTHO05D007969 4.9e-19 99.4 238 61.3
Thhalv10026017m.g Eutrema salsugineum HOM05D006475 ORTHO05D007969 4.9e-19 99.4 231 63.2
Carub.0007s2200 Capsella rubella HOM05D006475 ORTHO05D007969 6.4e-19 99.0 232 63.8
Aa31LG6G1840 Aethionema arabicum HOM05D006475 ORTHO05D007969 1.1e-18 98.2 237 62.9
arahy.Tifrunner.gnm1.ann1.SLXS5Y Arachis hypogaea HOM05D006475 ORTHO05D007969 1.1e-18 98.2 67 71.6
A01p11110 Brassica napus HOM05D006475 ORTHO05D007969 1.1e-18 98.2 234 65.0
BraA01t01057Z Brassica rapa HOM05D006475 ORTHO05D007969 1.1e-18 98.2 234 65.0
Sp7g17850 Schrenkiella parvula HOM05D006475 ORTHO05D007969 1.1e-18 98.2 233 62.2
TWI23G0232 Tripterygium wilfordii HOM05D006475 ORTHO05D007969 1.1e-18 98.2 238 60.9
Eucgr.D02591 Eucalyptus grandis HOM05D006475 ORTHO05D007969 1.9e-18 97.4 234 63.2
PGSC0003DMG400018460 Solanum tuberosum HOM05D006475 ORTHO05D007969 1.9e-18 97.4 67 70.1
Hma1.2p1_0544F.1_g175570 Hydrangea macrophylla HOM05D006475 ORTHO05D007969 2.4e-18 97.1 247 57.5
Cpa.g.sc137.18 Carica papaya HOM05D006475 ORTHO05D007969 5.4e-18 95.9 235 60.4
Peaxi162Scf00045g00636 Petunia axillaris HOM05D006475 ORTHO05D007969 7.1e-18 95.5 237 62.0
Hund11101 Selenicereus undatus HOM05D006475 ORTHO05D007969 7.1e-18 95.5 245 60.0
Lsat_1_v5_gn_6_15221 Lactuca sativa HOM05D006475 ORTHO05D007969 9.3e-18 95.1 236 61.4
Rhsim07G0139200 Rhododendron simsii HOM05D006475 ORTHO05D007969 9.3e-18 95.1 238 60.9
Solyc08g005520.3 Solanum lycopersicum HOM05D006475 ORTHO05D007969 9.3e-18 95.1 67 67.2
VMungo1215G2540 Vigna mungo HOM05D006475 ORTHO05D007969 9.3e-18 95.1 236 63.6
Phvul.002G128300 Phaseolus vulgaris HOM05D006475 ORTHO05D007969 1.6e-17 94.4 239 61.1
arahy.Tifrunner.gnm1.ann1.17PB5S Arachis hypogaea HOM05D006475 ORTHO05D007969 2.1e-17 94.0 66 68.2
Aqoxy7G00886 Aquilegia oxysepala HOM05D006475 ORTHO05D007969 3.5e-17 93.2 254 59.8
CiPaw.12G072000 Carya illinoinensis HOM05D006475 ORTHO05D007969 6.0e-17 92.4 237 60.8
Gohir.A05G381700 Gossypium hirsutum HOM05D006475 ORTHO05D007969 6.0e-17 92.4 233 63.1
HanXRQChr08g0226771 Helianthus annuus HOM05D006475 ORTHO05D007969 6.0e-17 92.4 240 58.8
Sopen08g001530 Solanum pennellii HOM05D006475 ORTHO05D007969 7.9e-17 92.0 236 60.6
Nitab4.5_0001175g0100 Nicotiana tabacum HOM05D006475 ORTHO05D007969 1.0e-16 91.7 238 61.3
Nitab4.5_0006541g0010 Nicotiana tabacum HOM05D006475 ORTHO05D007969 1.0e-16 91.7 240 61.7
arahy.Tifrunner.gnm1.ann1.Y3VSY6 Arachis hypogaea HOM05D006475 ORTHO05D007969 1.3e-16 91.3 67 65.7
Migut.E01351 Erythranthe guttata HOM05D006475 ORTHO05D007969 1.8e-16 90.9 230 62.6
TPR.G17268 Trifolium pratense HOM05D006475 ORTHO05D007969 1.8e-16 90.9 66 68.2
Cc08_g05010 Coffea canephora HOM05D006475 ORTHO05D007969 5.1e-16 89.4 241 45.2
arahy.Tifrunner.gnm1.ann1.0NMX6V Arachis hypogaea HOM05D006475 ORTHO05D007969 6.7e-16 89.0 252 57.5
arahy.Tifrunner.gnm1.ann1.CC5QNU Arachis hypogaea HOM05D006475 ORTHO05D007969 6.7e-16 89.0 252 57.5
Gohir.D03G018700 Gossypium hirsutum HOM05D006475 ORTHO05D007969 6.7e-16 89.0 67 65.7
Zm00001eb136830 Zea mays HOM05D283639 ORTHO05D007969 6.7e-16 89.0 50 98.0
Lalb_Chr05g0215421 Lupinus albus HOM05D006475 ORTHO05D007969 8.7e-16 88.6 247 60.7
DCAR_028235 Daucus carota HOM05D006475 ORTHO05D007969 1.5e-15 87.8 236 58.5
Medtr5g026800 Medicago truncatula HOM05D006475 ORTHO05D007969 1.5e-15 87.8 250 59.2
Haze_08058 Corylus avellana HOM05D006475 ORTHO05D007969 3.3e-15 86.7 247 59.1
Gorai.012G037900 Gossypium raimondii HOM05D006475 ORTHO05D007969 3.3e-15 86.7 233 62.2
AagrBONN_evm.TU.Sc2ySwM_228.4166 Anthoceros agrestis HOM05D006475 ORTHO05D007969 4.3e-15 86.3 67 62.7
Dinv28010 Davidia involucrata HOM05D006475 ORTHO05D007969 4.3e-15 86.3 58 69.0
PSO717G0136 Papaver somniferum HOM05D006475 ORTHO05D007969 4.3e-15 86.3 260 56.2
CANSAT21G0913 Cannabis sativa HOM05D006475 ORTHO05D007969 7.4e-15 85.5 201 66.2
Haze_08048 Corylus avellana HOM05D006475 ORTHO05D007969 1.3e-14 84.7 255 57.3
Gohir.D04G033600 Gossypium hirsutum HOM05D006475 ORTHO05D007969 1.3e-14 84.7 233 61.8
Mapoly0051s0035 Marchantia polymorpha HOM05D006475 ORTHO05D007969 1.3e-14 84.7 69 59.4
PSO675G8107 Papaver somniferum HOM05D006475 ORTHO05D007969 1.3e-14 84.7 260 55.8
ECA233G2922 Erigeron canadensis HOM05D006475 ORTHO05D007969 6.2e-14 82.4 239 46.4
CAN.G320.16 Capsicum annuum HOM05D006475 ORTHO05D007969 1.1e-13 81.6 235 59.1
Ciclev10005760m.g Citrus clementina HOM05D006475 ORTHO05D007969 2.4e-13 80.5 229 61.1
Psat2g142320 Pisum sativum HOM05D006475 ORTHO05D007969 6.9e-13 79.0 57 68.4
C03p81780 Brassica napus HOM05D006475 ORTHO05D007969 2.6e-12 77.0 67 64.2
BolC3t20450H Brassica oleracea HOM05D006475 ORTHO05D007969 2.2e-11 73.9 67 62.7
Lj2g0004034 Lotus japonicus HOM05D006475 ORTHO05D007969 1.1e-10 71.6 47 74.5
SEGI_07236 Sequoiadendron giganteum HOM05D006475 ORTHO05D007969 1.4e-10 71.2 246 52.8
vmacro17427 Vaccinium macrocarpon HOM05D006475 ORTHO05D007969 3.2e-10 70.1 287 50.2
Pp3c7_14210 Physcomitrium patens HOM05D006475 ORTHO05D007969 4.6e-09 66.2 52 57.7
ClCG10G015530 Citrullus lanatus HOM05D000058 ORTHO05D000077 3.9e-08 63.2 49 61.2
TAR375G0514 Trochodendron aralioides HOM05D006475 ORTHO05D007969 5.1e-08 62.8 236 56.8
FAN18G4370 Fragaria x ananassa HOM05D006475 ORTHO05D007969 6.7e-08 62.4 199 64.8
arahy.Tifrunner.gnm1.ann1.X7UPX8 Arachis hypogaea HOM05D006475 ORTHO05D007969 1.1e-07 61.6 97 41.2
Sc07g0008230 Simmondsia chinensis HOM05D006475 ORTHO05D007969 1.1e-07 61.6 33 84.8
CBR_g41202 Chara braunii HOM05D006475 ORTHO05D007969 5.7e-07 59.3 44 63.6
CsaV3_3G040920 Cucumis sativus L. HOM05D006475 ORTHO05D007969 1.3e-06 58.2 249 51.8
arahy.Tifrunner.gnm1.ann1.79230D Arachis hypogaea HOM05D006475 ORTHO05D007969 4.8e-06 56.2 67 53.7


User provided reference genes

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