Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb025440 Zea mays HOM05D005341 ORTHO05D006712 5.1e-53 210.7 97 100.0
Zm00001eb049700 Zea mays HOM05D005341 ORTHO05D006712 5.1e-53 210.7 97 100.0
Zm00001eb054520 Zea mays HOM05D005341 ORTHO05D006712 1.0e-37 159.8 73 98.6
Zm00001eb142690 Zea mays HOM05D005341 ORTHO05D006712 1.7e-37 159.1 72 100.0
Zm00001eb409650 Zea mays HOM05D005341 ORTHO05D006712 1.7e-37 159.1 72 100.0
Zm00001eb341930 Zea mays HOM05D005341 ORTHO05D006712 2.5e-36 155.2 71 100.0
Zm00001eb216580 Zea mays HOM05D005341 ORTHO05D006712 1.8e-34 149.1 73 89.0
Lj4g0007741 Lotus japonicus HOM05D005341 ORTHO05D006712 9.3e-31 136.7 72 80.6
Os03g0708100 Oryza sativa ssp. japonica HOM05D005341 ORTHO05D006712 1.6e-30 136.0 73 82.2
Peaxi162Scf00159g01021 Petunia axillaris HOM05D005341 ORTHO05D006712 1.6e-30 136.0 72 80.6
Nitab4.5_0000688g0150 Nicotiana tabacum HOM05D005341 ORTHO05D006712 2.7e-30 135.2 71 81.7
Os05g0473900 Oryza sativa ssp. japonica HOM05D005341 ORTHO05D006712 2.7e-30 135.2 73 80.8
Cc11_g08490 Coffea canephora HOM05D005341 ORTHO05D006712 4.6e-30 134.4 72 76.4
MSTRG.2162 Avicennia marina HOM05D005341 ORTHO05D006712 6.0e-30 134.0 72 76.4
Duzib268G0076 Durio zibethinus HOM05D005341 ORTHO05D006712 6.0e-30 134.0 72 77.8
Sc04g0005370 Simmondsia chinensis HOM05D005341 ORTHO05D006712 7.9e-30 133.7 72 77.8
CAN.G1298.33 Capsicum annuum HOM05D005341 ORTHO05D006712 1.0e-29 133.3 72 77.8
COL.COLO4_13155 Corchorus olitorius HOM05D005341 ORTHO05D006712 1.0e-29 133.3 72 76.4
Migut.E00437 Erythranthe guttata HOM05D005341 ORTHO05D006712 1.3e-29 132.9 72 76.4
Oeu018602.1 Olea europaea HOM05D005341 ORTHO05D006712 1.3e-29 132.9 72 76.4
Thecc.02G283300 Theobroma cacao HOM05D005341 ORTHO05D006712 1.3e-29 132.9 72 76.4
Phvul.002G095700 Phaseolus vulgaris HOM05D005341 ORTHO05D006712 1.8e-29 132.5 72 77.8
AUR62039516 Chenopodium quinoa HOM05D005341 ORTHO05D006712 2.3e-29 132.1 77 71.4
DCAR_007306 Daucus carota HOM05D005341 ORTHO05D006712 2.3e-29 132.1 72 75.0
TAR622G0920 Trochodendron aralioides HOM05D005341 ORTHO05D006712 2.3e-29 132.1 91 63.7
Duzib251G0346 Durio zibethinus HOM05D005341 ORTHO05D006712 3.0e-29 131.7 72 76.4
Hund24969 Selenicereus undatus HOM05D005341 ORTHO05D006712 3.0e-29 131.7 72 76.4
MD16G1026600 Malus domestica HOM05D005341 ORTHO05D006712 3.9e-29 131.3 72 76.4
Oeu062657.1 Olea europaea HOM05D005341 ORTHO05D006712 3.9e-29 131.3 71 78.9
Ah.02g127780 Amaranthus hybridus HOM05D005341 ORTHO05D006712 5.1e-29 131.0 72 76.4
QL01p001313 Quercus lobata HOM05D005341 ORTHO05D006712 6.7e-29 130.6 73 74.0
SalBow8G3124 Salvia bowleyana HOM05D005341 ORTHO05D006712 1.1e-28 129.8 72 75.0
SalBow8G3488 Salvia bowleyana HOM05D005341 ORTHO05D006712 1.1e-28 129.8 72 75.0
unitig_27.g25178 Utricularia gibba HOM05D005341 ORTHO05D006712 1.1e-28 129.8 72 72.2
unitig_29.g31871 Utricularia gibba HOM05D005341 ORTHO05D006712 1.1e-28 129.8 72 72.2
PGR044G1964 Punica granatum HOM05D005341 ORTHO05D006712 1.5e-28 129.4 72 75.0
Atru.chr11.477 Acer truncatum HOM05D005341 ORTHO05D006712 2.5e-28 128.6 72 75.0
ECA234G4311 Erigeron canadensis HOM05D005341 ORTHO05D006712 2.5e-28 128.6 72 72.2
TPR.G38361 Trifolium pratense HOM05D005341 ORTHO05D006712 2.5e-28 128.6 72 75.0
Gohir.D01G144400 Gossypium hirsutum HOM05D005341 ORTHO05D006712 3.3e-28 128.3 72 73.6
Gorai.002G178300 Gossypium raimondii HOM05D005341 ORTHO05D006712 3.3e-28 128.3 72 73.6
HanXRQChr17g0567271 Helianthus annuus HOM05D005341 ORTHO05D006712 3.3e-28 128.3 72 73.6
Prupe.1G326800 Prunus persica HOM05D005341 ORTHO05D006712 3.3e-28 128.3 72 75.0
Sopen05g003820 Solanum pennellii HOM05D005341 ORTHO05D006712 3.3e-28 128.3 72 75.0
TWI31G1197 Tripterygium wilfordii HOM05D005341 ORTHO05D006712 3.3e-28 128.3 72 75.0
MD13G1023900 Malus domestica HOM05D005341 ORTHO05D006712 4.3e-28 127.9 72 75.0
Solyc05g007970.4 Solanum lycopersicum HOM05D005341 ORTHO05D006712 4.3e-28 127.9 72 73.6
PGSC0003DMG400018423 Solanum tuberosum HOM05D005341 ORTHO05D006712 4.3e-28 127.9 72 75.0
Zm00001eb184170 Zea mays HOM05D005341 ORTHO05D006712 4.3e-28 127.9 72 86.1
Dinv14419 Davidia involucrata HOM05D005341 ORTHO05D006712 5.6e-28 127.5 72 73.6
Thhalv10000985m.g Eutrema salsugineum HOM05D005341 ORTHO05D006712 5.6e-28 127.5 72 70.8
Glyma.20G017500 Glycine max HOM05D005341 ORTHO05D006712 5.6e-28 127.5 72 75.0
Nn4g24210 Nelumbo nucifera HOM05D005341 ORTHO05D006712 5.6e-28 127.5 72 75.0
HPP92_005883 Vanilla planifolia HOM05D005341 ORTHO05D006712 5.6e-28 127.5 72 75.0
CAN.G651.12 Capsicum annuum HOM05D005428 ORTHO05D006876 7.4e-28 127.1 73 74.0
Lalb_Chr16g0385061 Lupinus albus HOM05D005341 ORTHO05D006712 7.4e-28 127.1 72 72.2
arahy.Tifrunner.gnm1.ann1.LQU7YY Arachis hypogaea HOM05D005341 ORTHO05D006712 9.6e-28 126.7 72 73.6
FvH4_4g32640 Fragaria vesca HOM05D005341 ORTHO05D006712 9.6e-28 126.7 73 72.6
FAN12G2540 Fragaria x ananassa HOM05D005341 ORTHO05D006712 9.6e-28 126.7 73 72.6
EL10Ac3g06547 Beta vulgaris HOM05D005341 ORTHO05D006712 1.3e-27 126.3 70 75.7
Manes.15G129000 Manihot esculenta HOM05D005341 ORTHO05D006712 1.3e-27 126.3 72 72.2
Aqoxy3G00085 Aquilegia oxysepala HOM05D005341 ORTHO05D006712 1.6e-27 125.9 72 73.6
BcaC03g17044 Brassica carinata HOM05D005341 ORTHO05D006712 1.6e-27 125.9 72 70.8
A02p32060 Brassica napus HOM05D005341 ORTHO05D006712 1.6e-27 125.9 72 70.8
C02p49590 Brassica napus HOM05D005341 ORTHO05D006712 1.6e-27 125.9 72 70.8
BolC2t11038H Brassica oleracea HOM05D005341 ORTHO05D006712 1.6e-27 125.9 72 70.8
BraA02t08217Z Brassica rapa HOM05D005341 ORTHO05D006712 1.6e-27 125.9 72 70.8
AUR62014184 Chenopodium quinoa HOM05D005341 ORTHO05D006712 1.6e-27 125.9 70 75.7
MELO3C026795.2 Cucumis melo HOM05D005341 ORTHO05D006712 1.6e-27 125.9 72 70.8
Sed0016642 Sechium edule HOM05D005341 ORTHO05D006712 1.6e-27 125.9 72 72.2
BolC9t55880H Brassica oleracea HOM05D005341 ORTHO05D006712 2.1e-27 125.6 71 70.4
Ca_18745_v3 Cicer arietinum L. HOM05D005341 ORTHO05D006712 2.1e-27 125.6 71 74.6
ClCG11G001200 Citrullus lanatus HOM05D005341 ORTHO05D006712 2.1e-27 125.6 72 70.8
FAN07G0561 Fragaria x ananassa HOM05D005341 ORTHO05D006712 2.1e-27 125.6 73 71.2
Rhsim09G0096600 Rhododendron simsii HOM05D005341 ORTHO05D006712 2.1e-27 125.6 72 73.6
RcHm_v2.0_Chr4g0441521 Rosa chinensis HOM05D005341 ORTHO05D006712 2.1e-27 125.6 72 72.2
GSVIVG01011739001 Vitis vinifera HOM05D005341 ORTHO05D006712 2.1e-27 125.6 72 69.4
CiPaw.05G196000 Carya illinoinensis HOM05D005341 ORTHO05D006712 2.8e-27 125.2 73 72.6
THA.LOC104823806 Tarenaya hassleriana HOM05D005341 ORTHO05D006712 2.8e-27 125.2 71 71.8
VMungo0251G3738 Vigna mungo HOM05D005341 ORTHO05D006712 2.8e-27 125.2 72 72.2
Sp2g12940 Schrenkiella parvula HOM05D005341 ORTHO05D006712 3.7e-27 124.8 72 69.4
BcaC04g21581 Brassica carinata HOM05D005341 ORTHO05D006712 4.8e-27 124.4 71 69.0
C09p30150 Brassica napus HOM05D005341 ORTHO05D006712 4.8e-27 124.4 71 69.0
CSS0010642 Camellia sinensis var. sinensis HOM05D005341 ORTHO05D006712 4.8e-27 124.4 72 70.8
Carub.0005s0045 Capsella rubella HOM05D005341 ORTHO05D006712 4.8e-27 124.4 72 68.1
Gohir.A01G151200 Gossypium hirsutum HOM05D005341 ORTHO05D006712 4.8e-27 124.4 72 72.2
Psat7g129280 Pisum sativum HOM05D005341 ORTHO05D006712 4.8e-27 124.4 71 73.2
vmacro10652 Vaccinium macrocarpon HOM05D005341 ORTHO05D006712 4.8e-27 124.4 72 70.8
ATR0564G155 Amborella trichopoda HOM05D005341 ORTHO05D006712 6.2e-27 124.0 72 70.8
Cpa.g.sc65.157 Carica papaya HOM05D005341 ORTHO05D006712 6.2e-27 124.0 72 70.8
CsaV3_5G013260 Cucumis sativus L. HOM05D005341 ORTHO05D006712 6.2e-27 124.0 72 69.4
Lj6A744T53 Lonicera japonica HOM05D005341 ORTHO05D006712 6.2e-27 124.0 73 71.2
MBI12_g12675_MAGBIO Magnolia biondii HOM05D005341 ORTHO05D006712 6.2e-27 124.0 71 71.8
Actinidia36662 Actinidia chinensis HOM05D005341 ORTHO05D006712 8.1e-27 123.6 72 69.4
Aa31LG2G8430 Aethionema arabicum HOM05D005341 ORTHO05D006712 8.1e-27 123.6 72 69.4
A09p23410 Brassica napus HOM05D005341 ORTHO05D006712 8.1e-27 123.6 71 69.0
Glyma.07G219300 Glycine max HOM05D005341 ORTHO05D006712 8.1e-27 123.6 72 72.2
Potri.006G222800 Populus trichocarpa HOM05D005341 ORTHO05D006712 8.1e-27 123.6 72 70.8
CARHR144010 Cardamine hirsuta HOM05D005341 ORTHO05D006712 1.1e-26 123.2 72 69.4
FAN22G2374 Fragaria x ananassa HOM05D005341 ORTHO05D006712 1.4e-26 122.9 73 69.9
Lsat_1_v5_gn_4_13500 Lactuca sativa HOM05D005341 ORTHO05D006712 1.8e-26 122.5 72 69.4
Sabra06G0172200 Salix brachista HOM05D005341 ORTHO05D006712 2.4e-26 122.1 72 70.8
PSO478G3305 Papaver somniferum HOM05D005341 ORTHO05D006712 4.0e-26 121.3 72 75.0
Ciclev10016178m.g Citrus clementina HOM05D005341 ORTHO05D006712 5.3e-26 120.9 72 68.1
BcaB07g30394 Brassica carinata HOM05D005341 ORTHO05D006712 6.9e-26 120.6 72 68.1
BraA09t37941Z Brassica rapa HOM05D005341 ORTHO05D006712 6.9e-26 120.6 71 67.6
Ca_29576_v3 Cicer arietinum L. HOM05D005341 ORTHO05D006712 6.9e-26 120.6 69 75.4
CDE05G0416 Ceratophyllum demersum HOM05D005341 ORTHO05D006712 9.0e-26 120.2 72 68.1
AL5G10480 Arabidopsis lyrata HOM05D005341 ORTHO05D006712 1.2e-25 119.8 72 66.7
Eucgr.B00057 Eucalyptus grandis HOM05D005341 ORTHO05D006712 1.5e-25 119.4 72 68.1
vmacro10649 Vaccinium macrocarpon HOM05D005341 ORTHO05D006712 1.5e-25 119.4 70 71.4
AT2G01490 Arabidopsis thaliana HOM05D005341 ORTHO05D006712 2.6e-25 118.6 72 65.3
PSO017G2475 Papaver somniferum HOM05D005341 ORTHO05D006712 2.6e-25 118.6 72 73.6
SEGI_27003 Sequoiadendron giganteum HOM05D005341 ORTHO05D006712 7.6e-25 117.1 72 65.3
AagrBONN_evm.TU.Sc2ySwM_228.566 Anthoceros agrestis HOM05D005341 ORTHO05D006712 3.8e-24 114.8 71 64.8
Medtr4g084560 Medicago truncatula HOM05D005341 ORTHO05D006712 3.8e-24 114.8 79 65.8
SHI36659 Sapria himalayana HOM05D005341 ORTHO05D006712 8.4e-24 113.6 71 63.4
SMO358G0398 Selaginella moellendorffii HOM05D005341 ORTHO05D006712 1.4e-23 112.8 72 63.9
BcaB07g30743 Brassica carinata HOM05D005341 ORTHO05D006712 1.0e-21 106.7 72 59.7
AagrBONN_evm.TU.Sc2ySwM_117.3795 Anthoceros agrestis HOM05D005341 ORTHO05D006712 1.6e-19 99.4 72 52.8
Mapoly0012s0126 Marchantia polymorpha HOM05D005341 ORTHO05D006712 3.8e-16 88.2 66 54.5
Pp3c7_14500 Physcomitrium patens HOM05D005341 ORTHO05D006712 4.9e-16 87.8 84 40.5
CBR_g31524 Chara braunii HOM05D005341 ORTHO05D006712 2.5e-15 85.5 59 54.2
Cre16.g673281 Chlamydomonas reinhardtii HOM05D005341 ORTHO05D006712 1.3e-13 79.7 64 51.6
SGA_v2.0_scaffold39G15193 Striga asiatica HOM05D005341 ORTHO05D006712 6.7e-13 77.4 41 78.0
CANSAT25G0384 Cannabis sativa HOM05D005341 ORTHO05D006712 3.7e-11 71.6 41 75.6
MCO03G480 Micromonas commoda HOM05D005341 ORTHO05D006712 3.7e-11 71.6 68 47.1
Haze_10982 Corylus avellana HOM05D005341 ORTHO05D006712 1.1e-10 70.1 43 69.8
Actinidia14980 Actinidia chinensis HOM05D005341 ORTHO05D006712 1.8e-10 69.3 41 70.7
PRCOL_00000921 Prasinoderma coloniale HOM05D005341 ORTHO05D006712 1.5e-09 66.2 64 46.9
Cfa022618 Carpinus fangiana HOM05D005341 ORTHO05D006712 3.2e-07 58.5 74 36.5


User provided reference genes

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