Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb025280 Zea mays HOM05D005522 ORTHO05D048680 1.6e-25 118.6 58 100.0
Zm00001eb093120 Zea mays HOM05D005522 ORTHO05D007414 3.3e-23 110.9 55 96.4
Os12g0139600 Oryza sativa ssp. japonica HOM05D005522 ORTHO05D007414 5.8e-20 100.1 55 81.8
Os11g0143500 Oryza sativa ssp. japonica HOM05D005522 ORTHO05D007414 1.7e-19 98.6 55 80.0
PSO384G4421 Papaver somniferum HOM05D005522 ORTHO05D007414 6.6e-16 86.7 51 72.5
TWI77G0538 Tripterygium wilfordii HOM05D005522 ORTHO05D007414 1.1e-15 85.9 51 74.5
AUR62030366 Chenopodium quinoa HOM05D005522 ORTHO05D007414 2.5e-15 84.7 55 65.5
Nitab4.5_0013059g0010 Nicotiana tabacum HOM05D005522 ORTHO05D007414 2.5e-15 84.7 52 73.1
Dinv04140 Davidia involucrata HOM05D005522 ORTHO05D007414 3.3e-15 84.3 50 72.0
Dinv04141 Davidia involucrata HOM05D005522 ORTHO05D007414 3.3e-15 84.3 50 72.0
TAR171G0004 Trochodendron aralioides HOM05D005522 ORTHO05D007414 3.3e-15 84.3 51 72.5
CAN.G641.42 Capsicum annuum HOM05D005522 ORTHO05D007414 5.6e-15 83.6 47 74.5
Lj2A394T33 Lonicera japonica HOM05D005522 ORTHO05D007414 5.6e-15 83.6 51 70.6
MBI03_g36664_MAGBIO Magnolia biondii HOM05D005522 ORTHO05D007414 5.6e-15 83.6 51 70.6
Peaxi162Scf00767g00611 Petunia axillaris HOM05D005522 ORTHO05D007414 5.6e-15 83.6 47 78.7
Potri.016G040300 Populus trichocarpa HOM05D005522 ORTHO05D007414 5.6e-15 83.6 51 72.5
Nitab4.5_0002267g0070 Nicotiana tabacum HOM05D005522 ORTHO05D007414 7.3e-15 83.2 52 71.2
Solyc10g079470.3 Solanum lycopersicum HOM05D005522 ORTHO05D007414 7.3e-15 83.2 55 67.3
EL10Ac3g07189 Beta vulgaris HOM05D005522 ORTHO05D007414 9.5e-15 82.8 55 63.6
Hund24634 Selenicereus undatus HOM05D005522 ORTHO05D007414 9.5e-15 82.8 55 63.6
Sopen10g030110 Solanum pennellii HOM05D005522 ORTHO05D007414 9.5e-15 82.8 55 67.3
Eucgr.A02267 Eucalyptus grandis HOM05D005522 ORTHO05D007414 1.2e-14 82.4 58 65.5
MBI03_g28429_MAGBIO Magnolia biondii HOM05D005522 ORTHO05D007414 1.2e-14 82.4 51 68.6
Actinidia39175 Actinidia chinensis HOM05D005522 ORTHO05D007414 1.6e-14 82.0 50 72.0
Cpa.g.sc5.195 Carica papaya HOM05D005522 ORTHO05D007414 1.6e-14 82.0 51 70.6
Cc06_g18590 Coffea canephora HOM05D005522 ORTHO05D007414 1.6e-14 82.0 51 70.6
Haze_19737 Corylus avellana HOM05D005522 ORTHO05D007414 1.6e-14 82.0 50 70.0
Prupe.7G046300 Prunus persica HOM05D005522 ORTHO05D007414 1.6e-14 82.0 47 78.7
Prupe.7G046500 Prunus persica HOM05D005522 ORTHO05D007414 1.6e-14 82.0 47 78.7
Sabra16G0043500 Salix brachista HOM05D005522 ORTHO05D007414 1.6e-14 82.0 51 72.5
SalBow6G2663 Salvia bowleyana HOM05D005522 ORTHO05D007414 1.6e-14 82.0 51 68.6
PGSC0003DMG400008132 Solanum tuberosum HOM05D005522 ORTHO05D007414 1.6e-14 82.0 54 72.2
vmacro07825 Vaccinium macrocarpon HOM05D005522 ORTHO05D007414 1.6e-14 82.0 50 70.0
Cfa016729 Carpinus fangiana HOM05D005522 ORTHO05D007414 2.1e-14 81.6 50 70.0
AUR62040849 Chenopodium quinoa HOM05D005522 ORTHO05D007414 2.1e-14 81.6 55 60.0
THA.LOC104816408 Tarenaya hassleriana HOM05D005522 ORTHO05D007414 2.1e-14 81.6 54 68.5
TPR.G8835 Trifolium pratense HOM05D005522 ORTHO05D007414 2.1e-14 81.6 54 64.8
Migut.J01682 Erythranthe guttata HOM05D005522 ORTHO05D007414 2.8e-14 81.3 52 63.5
MD00G1074000 Malus domestica HOM05D005522 ORTHO05D007414 2.8e-14 81.3 55 65.5
GSVIVG01033574001 Vitis vinifera HOM05D005522 ORTHO05D007414 2.8e-14 81.3 51 66.7
COL.COLO4_33937 Corchorus olitorius HOM05D005522 ORTHO05D007414 3.6e-14 80.9 53 67.9
Thhalv10010214m.g Eutrema salsugineum HOM05D005522 ORTHO05D007414 3.6e-14 80.9 50 74.0
QL07p006599 Quercus lobata HOM05D005522 ORTHO05D007414 3.6e-14 80.9 50 70.0
Atru.chr1.1278 Acer truncatum HOM05D005522 ORTHO05D007414 6.2e-14 80.1 50 70.0
BcaB01g00861 Brassica carinata HOM05D005522 ORTHO05D007414 6.2e-14 80.1 50 72.0
Carub.0005s1405 Capsella rubella HOM05D005522 ORTHO05D007414 6.2e-14 80.1 50 72.0
Ca_21519_v3 Cicer arietinum L. HOM05D005522 ORTHO05D007414 6.2e-14 80.1 54 64.8
Ciclev10004603m.g Citrus clementina HOM05D005522 ORTHO05D007414 6.2e-14 80.1 50 68.0
HanXRQChr13g0391861 Helianthus annuus HOM05D005522 ORTHO05D007414 6.2e-14 80.1 51 70.6
Hma1.2p1_0056F.1_g031850 Hydrangea macrophylla HOM05D005522 ORTHO05D007414 6.2e-14 80.1 50 70.0
AT3G47930 Arabidopsis thaliana HOM05D005522 ORTHO05D007414 8.1e-14 79.7 50 72.0
CDE08G1189 Ceratophyllum demersum HOM05D005522 ORTHO05D007414 8.1e-14 79.7 53 71.7
Duzib093G0281 Durio zibethinus HOM05D005522 ORTHO05D007414 8.1e-14 79.7 50 68.0
MD12G1091400 Malus domestica HOM05D005522 ORTHO05D048680 8.1e-14 79.7 56 64.3
Sp5g14030 Schrenkiella parvula HOM05D005522 ORTHO05D007414 8.1e-14 79.7 50 72.0
AL5G27240 Arabidopsis lyrata HOM05D005522 ORTHO05D007414 1.1e-13 79.3 50 72.0
Lj5g0015939 Lotus japonicus HOM05D005522 ORTHO05D007414 1.1e-13 79.3 51 66.7
RhsimUnG0217500 Rhododendron simsii HOM05D005522 ORTHO05D007414 1.1e-13 79.3 50 72.0
Sc19g0008330 Simmondsia chinensis HOM05D005522 ORTHO05D007414 1.1e-13 79.3 55 58.2
MSTRG.19821 Avicennia marina HOM05D005522 ORTHO05D007414 1.4e-13 79.0 50 68.0
BcaC01g01764 Brassica carinata HOM05D005522 ORTHO05D007414 1.4e-13 79.0 50 70.0
A06p19740 Brassica napus HOM05D005522 ORTHO05D007414 1.4e-13 79.0 50 70.0
C03p72160 Brassica napus HOM05D005522 ORTHO05D007414 1.4e-13 79.0 50 70.0
BolC3t19512H Brassica oleracea HOM05D005522 ORTHO05D007414 1.4e-13 79.0 50 70.0
BraA06t25053Z Brassica rapa HOM05D005522 ORTHO05D007414 1.4e-13 79.0 50 70.0
CARHR156640 Cardamine hirsuta HOM05D005522 ORTHO05D007414 1.4e-13 79.0 50 72.0
Gorai.007G353900 Gossypium raimondii HOM05D005522 ORTHO05D007414 1.4e-13 79.0 51 66.7
Ah.04g151150 Amaranthus hybridus HOM05D005522 ORTHO05D007414 1.8e-13 78.6 55 61.8
CiPaw.10G038000 Carya illinoinensis HOM05D005522 ORTHO05D007414 1.8e-13 78.6 50 66.0
Dinv18487 Davidia involucrata HOM05D005522 ORTHO05D007414 1.8e-13 78.6 50 68.0
Glyma.02G166300 Glycine max HOM05D005522 ORTHO05D007414 1.8e-13 78.6 50 70.0
Gohir.A11G308400 Gossypium hirsutum HOM05D005522 ORTHO05D007414 1.8e-13 78.6 51 66.7
Rhsim03G0034500 Rhododendron simsii HOM05D005522 ORTHO05D007414 1.8e-13 78.6 47 74.5
CSS0038435 Camellia sinensis var. sinensis HOM05D005522 ORTHO05D007414 2.3e-13 78.2 56 66.1
Manes.08G056700 Manihot esculenta HOM05D005522 ORTHO05D007414 2.3e-13 78.2 50 70.0
SGA_v2.0_scaffold69G23141 Striga asiatica HOM05D005522 ORTHO05D007414 2.3e-13 78.2 52 69.2
Thecc.05G141500 Theobroma cacao HOM05D005522 ORTHO05D007414 2.3e-13 78.2 52 63.5
FvH4_6g25110 Fragaria vesca HOM05D005522 ORTHO05D007414 4.0e-13 77.4 45 73.3
FAN05G4952 Fragaria x ananassa HOM05D005522 ORTHO05D007414 4.0e-13 77.4 45 73.3
FAN14G2465 Fragaria x ananassa HOM05D005522 ORTHO05D007414 4.0e-13 77.4 45 73.3
Medtr0506s0040 Medicago truncatula HOM05D005522 ORTHO05D007414 4.0e-13 77.4 51 64.7
Medtr1g050360 Medicago truncatula HOM05D005522 ORTHO05D007414 4.0e-13 77.4 51 64.7
CANSAT80G2685 Cannabis sativa HOM05D005522 ORTHO05D007414 5.2e-13 77.0 47 70.2
FAN02G3261 Fragaria x ananassa HOM05D005522 ORTHO05D007414 5.2e-13 77.0 45 71.1
FAN09G3441 Fragaria x ananassa HOM05D005522 ORTHO05D007414 5.2e-13 77.0 54 61.1
Lalb_Chr02g0156511 Lupinus albus HOM05D005522 ORTHO05D007414 5.2e-13 77.0 51 64.7
ATR0721G040 Amborella trichopoda HOM05D005522 ORTHO05D007414 6.8e-13 76.6 53 62.3
arahy.Tifrunner.gnm1.ann1.36JCD8 Arachis hypogaea HOM05D005522 ORTHO05D007414 6.8e-13 76.6 47 68.1
arahy.Tifrunner.gnm1.ann1.86D3P6 Arachis hypogaea HOM05D005522 ORTHO05D007414 6.8e-13 76.6 47 68.1
Glyma.10G104100 Glycine max HOM05D005522 ORTHO05D007414 6.8e-13 76.6 50 68.0
Sed0013105 Sechium edule HOM05D005522 ORTHO05D007414 6.8e-13 76.6 49 69.4
MELO3C020736.2 Cucumis melo HOM05D005522 ORTHO05D007414 8.9e-13 76.3 49 67.3
DCAR_020543 Daucus carota HOM05D005522 ORTHO05D007414 8.9e-13 76.3 48 66.7
RcHm_v2.0_Chr2g0124941 Rosa chinensis HOM05D005522 ORTHO05D007414 8.9e-13 76.3 45 73.3
CANSAT80G0471 Cannabis sativa HOM05D005522 ORTHO05D007414 1.2e-12 75.9 47 68.1
CsaV3_UNG143090 Cucumis sativus L. HOM05D005522 ORTHO05D007414 1.2e-12 75.9 49 65.3
HPP92_018215 Vanilla planifolia HOM05D005522 ORTHO05D007414 1.2e-12 75.9 51 66.7
Phvul.007G247900 Phaseolus vulgaris HOM05D005522 ORTHO05D007414 1.5e-12 75.5 50 66.0
VMungo0720G1534 Vigna mungo HOM05D005522 ORTHO05D007414 1.5e-12 75.5 49 65.3
Aa31LG4G16570 Aethionema arabicum HOM05D005522 ORTHO05D007414 2.6e-12 74.7 50 68.0
AagrBONN_evm.TU.Sc2ySwM_362.2734 Anthoceros agrestis HOM05D005522 ORTHO05D007414 3.4e-12 74.3 47 68.1
ECA248G3368 Erigeron canadensis HOM05D005522 ORTHO05D007414 3.4e-12 74.3 55 61.8
SEGI_02017 Sequoiadendron giganteum HOM05D005522 ORTHO05D007414 3.4e-12 74.3 49 69.4
Aqoxy1G00339 Aquilegia oxysepala HOM05D005522 ORTHO05D007414 4.4e-12 73.9 50 64.0
ClCG04G004060 Citrullus lanatus HOM05D005522 ORTHO05D007414 4.4e-12 73.9 49 65.3
Oeu062462.1 Olea europaea HOM05D005522 ORTHO05D007414 5.8e-12 73.6 46 71.7
Lsat_1_v5_gn_5_159221 Lactuca sativa HOM05D005522 ORTHO05D007414 7.5e-12 73.2 55 54.5
CBR_g48422 Chara braunii HOM05D005522 ORTHO05D007414 3.7e-11 70.9 50 62.0
Pp3c14_20870 Physcomitrium patens HOM05D005522 ORTHO05D007414 1.1e-10 69.3 47 63.8
Mapoly0077s0021 Marchantia polymorpha HOM05D005522 ORTHO05D007414 1.6e-09 65.5 47 57.4
Prupe.7G046600 Prunus persica HOM05D005522 ORTHO05D007414 2.1e-09 65.1 59 57.6
SHI24609 Sapria himalayana HOM05D005522 ORTHO05D007414 2.1e-09 65.1 45 64.4
Sabra06G0029400 Salix brachista HOM05D002155 ORTHO05D002215 5.1e-08 60.5 48 62.5
SMO146G0252 Selaginella moellendorffii HOM05D005522 ORTHO05D007414 1.2e-06 55.8 43 48.8


User provided reference genes

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