Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb025140 Zea mays HOM05D005120 ORTHO05D006174 6.0e-189 664.1 346 100.0
Zm00001eb025160 Zea mays HOM05D005120 ORTHO05D006174 2.1e-125 453.0 318 79.6
Os01g0511600 Oryza sativa ssp. japonica HOM05D005120 ORTHO05D006174 1.2e-77 294.3 293 58.4
DCAR_004262 Daucus carota HOM05D005120 ORTHO05D006174 1.4e-68 264.2 216 65.7
PGR042G0860 Punica granatum HOM05D005120 ORTHO05D006174 6.8e-68 261.9 307 53.7
TAR374G0846 Trochodendron aralioides HOM05D005120 ORTHO05D006174 8.9e-68 261.5 236 60.6
Sabra03G0067700 Salix brachista HOM05D005120 ORTHO05D006174 2.0e-67 260.4 217 64.1
Nn3g19343 Nelumbo nucifera HOM05D005120 ORTHO05D006174 2.6e-67 260.0 217 62.7
Lalb_Chr16g0391911 Lupinus albus HOM05D005120 ORTHO05D006174 3.4e-67 259.6 209 65.1
COL.COLO4_16896 Corchorus olitorius HOM05D005120 ORTHO05D006174 4.4e-67 259.2 215 64.2
Lj4g0011317 Lotus japonicus HOM05D005120 ORTHO05D006174 5.8e-67 258.8 234 59.4
EL10Ac5g11981 Beta vulgaris HOM05D005120 ORTHO05D006174 9.9e-67 258.1 212 62.7
Glyma.16G095100 Glycine max HOM05D005120 ORTHO05D006174 9.9e-67 258.1 264 56.4
BcaB03g13768 Brassica carinata HOM05D005120 ORTHO05D006174 1.3e-66 257.7 209 66.5
Hund14388 Selenicereus undatus HOM05D005120 ORTHO05D006174 1.3e-66 257.7 253 58.1
Lj8A318T44 Lonicera japonica HOM05D005120 ORTHO05D006174 1.7e-66 257.3 216 63.4
AUR62018612 Chenopodium quinoa HOM05D005120 ORTHO05D006174 2.9e-66 256.5 210 62.9
Ciclev10003461m.g Citrus clementina HOM05D005120 ORTHO05D006174 4.9e-66 255.8 200 64.0
Phvul.003G274000 Phaseolus vulgaris HOM05D005120 ORTHO05D006174 4.9e-66 255.8 230 61.3
Potri.003G099600 Populus trichocarpa HOM05D005120 ORTHO05D006174 4.9e-66 255.8 215 63.3
Eucgr.E01259 Eucalyptus grandis HOM05D005120 ORTHO05D006174 6.4e-66 255.4 216 64.4
Thhalv10007389m.g Eutrema salsugineum HOM05D005120 ORTHO05D006174 6.4e-66 255.4 217 64.1
BcaC05g27930 Brassica carinata HOM05D005120 ORTHO05D006174 8.3e-66 255.0 219 63.0
C05p39360 Brassica napus HOM05D005120 ORTHO05D006174 8.3e-66 255.0 219 63.0
BolC5t32672H Brassica oleracea HOM05D005120 ORTHO05D006174 8.3e-66 255.0 219 63.0
Haze_08107 Corylus avellana HOM05D005120 ORTHO05D006174 8.3e-66 255.0 209 64.6
CARHR031430 Cardamine hirsuta HOM05D005120 ORTHO05D006174 1.1e-65 254.6 217 63.6
Manes.17G006500 Manihot esculenta HOM05D005120 ORTHO05D006174 1.9e-65 253.8 256 56.2
Oeu042231.1 Olea europaea HOM05D005120 ORTHO05D006174 1.9e-65 253.8 225 61.3
Sopen08g024900 Solanum pennellii HOM05D005120 ORTHO05D006174 1.9e-65 253.8 216 63.0
GSVIVG01029984001 Vitis vinifera HOM05D005120 ORTHO05D006174 1.9e-65 253.8 194 66.5
Ah.07g201110 Amaranthus hybridus HOM05D005120 ORTHO05D006174 2.4e-65 253.4 206 64.6
AT1G32080 Arabidopsis thaliana HOM05D005120 ORTHO05D006174 2.4e-65 253.4 238 59.7
Cc08_g03980 Coffea canephora HOM05D005120 ORTHO05D006174 3.2e-65 253.1 216 63.0
Nn1g01918 Nelumbo nucifera HOM05D005120 ORTHO05D006174 3.2e-65 253.1 192 68.8
A05p25290 Brassica napus HOM05D005120 ORTHO05D006174 4.1e-65 252.7 219 62.6
Cfa012552 Carpinus fangiana HOM05D005120 ORTHO05D006174 4.1e-65 252.7 209 63.6
Nitab4.5_0000543g0120 Nicotiana tabacum HOM05D005120 ORTHO05D006174 4.1e-65 252.7 234 59.8
BraA05t21413Z Brassica rapa HOM05D005120 ORTHO05D006174 5.4e-65 252.3 219 62.1
ECA233G2235 Erigeron canadensis HOM05D005120 ORTHO05D006174 5.4e-65 252.3 226 60.2
MBI04_g36023_MAGBIO Magnolia biondii HOM05D005120 ORTHO05D006174 5.4e-65 252.3 191 69.6
Aqoxy7G00879 Aquilegia oxysepala HOM05D005120 ORTHO05D006174 7.1e-65 251.9 219 63.5
CAN.G773.16 Capsicum annuum HOM05D005120 ORTHO05D006174 7.1e-65 251.9 191 68.1
MD06G1023600 Malus domestica HOM05D005120 ORTHO05D006174 9.2e-65 251.5 254 54.3
Carub.0001s3040 Capsella rubella HOM05D005120 ORTHO05D006174 1.2e-64 251.1 242 58.7
QL12p000342 Quercus lobata HOM05D005120 ORTHO05D006174 1.2e-64 251.1 216 61.1
THA.LOC104798500 Tarenaya hassleriana HOM05D005120 ORTHO05D006174 1.2e-64 251.1 191 68.1
Gohir.A03G000018 Gossypium hirsutum HOM05D005120 ORTHO05D006174 1.6e-64 250.8 239 58.6
BcaC05g27233 Brassica carinata HOM05D005120 ORTHO05D006174 2.1e-64 250.4 200 65.5
CANSAT21G0750 Cannabis sativa HOM05D005120 ORTHO05D006174 2.1e-64 250.4 209 64.1
VMungo0251G1066 Vigna mungo HOM05D005120 ORTHO05D006174 2.1e-64 250.4 211 63.5
Cpa.g.sc757.1 Carica papaya HOM05D005120 ORTHO05D006174 2.7e-64 250.0 225 59.1
Gorai.003G186700 Gossypium raimondii HOM05D005120 ORTHO05D006174 2.7e-64 250.0 239 58.2
PGSC0003DMG402009291 Solanum tuberosum HOM05D005120 ORTHO05D006174 2.7e-64 250.0 199 64.8
Thecc.03G314000 Theobroma cacao HOM05D005120 ORTHO05D006174 2.7e-64 250.0 215 63.3
Aa31LG2G13920 Aethionema arabicum HOM05D005120 ORTHO05D006174 3.5e-64 249.6 248 58.1
Gohir.D03G177466 Gossypium hirsutum HOM05D005120 ORTHO05D006174 3.5e-64 249.6 239 58.2
Medtr8g070830 Medicago truncatula HOM05D005120 ORTHO05D006174 3.5e-64 249.6 233 60.1
Dinv06901 Davidia involucrata HOM05D005120 ORTHO05D006174 4.6e-64 249.2 213 62.0
PSO717G0011 Papaver somniferum HOM05D005120 ORTHO05D006174 4.6e-64 249.2 196 69.4
vmacro00236 Vaccinium macrocarpon HOM05D005120 ORTHO05D006174 4.6e-64 249.2 212 65.1
Nitab4.5_0006395g0010 Nicotiana tabacum HOM05D005120 ORTHO05D006174 6.0e-64 248.8 191 67.0
Prupe.5G024500 Prunus persica HOM05D005120 ORTHO05D006174 6.0e-64 248.8 223 59.2
A09p34100 Brassica napus HOM05D005120 ORTHO05D006174 1.0e-63 248.1 200 64.5
Solyc08g076290.3 Solanum lycopersicum HOM05D005120 ORTHO05D006174 1.0e-63 248.1 294 51.7
BraA09t38958Z Brassica rapa HOM05D005120 ORTHO05D006174 1.3e-63 247.7 200 64.5
Migut.A00586 Erythranthe guttata HOM05D005120 ORTHO05D006174 1.3e-63 247.7 271 54.2
FAN08G2640 Fragaria x ananassa HOM05D005120 ORTHO05D006174 1.3e-63 247.7 205 63.9
TWI60G0565 Tripterygium wilfordii HOM05D005120 ORTHO05D006174 1.3e-63 247.7 217 59.9
AL1G46150 Arabidopsis lyrata HOM05D005120 ORTHO05D006174 1.7e-63 247.3 229 60.3
arahy.Tifrunner.gnm1.ann1.H9FFKJ Arachis hypogaea HOM05D005120 ORTHO05D006174 1.7e-63 247.3 218 59.6
FAN18G2593 Fragaria x ananassa HOM05D005120 ORTHO05D006174 2.3e-63 246.9 245 57.1
Lsat_1_v5_gn_6_17781 Lactuca sativa HOM05D005120 ORTHO05D006174 2.3e-63 246.9 266 55.3
Sc07g0008440 Simmondsia chinensis HOM05D005120 ORTHO05D006174 2.3e-63 246.9 200 63.0
C05p31470 Brassica napus HOM05D005120 ORTHO05D006174 3.0e-63 246.5 200 64.5
BolC5t31871H Brassica oleracea HOM05D005120 ORTHO05D006174 3.0e-63 246.5 200 64.5
ATR0829G037 Amborella trichopoda HOM05D005120 ORTHO05D006174 5.1e-63 245.7 218 61.0
FvH4_5g23540 Fragaria vesca HOM05D005120 ORTHO05D006174 5.1e-63 245.7 245 56.7
FAN18G1216 Fragaria x ananassa HOM05D005120 ORTHO05D006174 5.1e-63 245.7 245 56.7
Sp1g27750 Schrenkiella parvula HOM05D005120 ORTHO05D006174 5.1e-63 245.7 208 63.5
Duzib205G1724 Durio zibethinus HOM05D005120 ORTHO05D006174 6.6e-63 245.4 270 53.3
FAN04G0205 Fragaria x ananassa HOM05D005120 ORTHO05D006174 6.6e-63 245.4 217 61.3
SalBow1G1967 Salvia bowleyana HOM05D005120 ORTHO05D006174 6.6e-63 245.4 263 52.5
CiPaw.11G101100 Carya illinoinensis HOM05D005120 ORTHO05D006174 8.6e-63 245.0 270 53.3
Psat4g111760 Pisum sativum HOM05D005120 ORTHO05D006174 8.6e-63 245.0 233 58.4
Rhsim11G0027600 Rhododendron simsii HOM05D005120 ORTHO05D006174 8.6e-63 245.0 204 63.7
RcHm_v2.0_Chr7g0212851 Rosa chinensis HOM05D005120 ORTHO05D006174 8.6e-63 245.0 205 62.9
Dinv29029 Davidia involucrata HOM05D005120 ORTHO05D006174 1.1e-62 244.6 204 61.3
HanXRQChr02g0050021 Helianthus annuus HOM05D005120 ORTHO05D006174 1.1e-62 244.6 206 62.1
PSO675G2578 Papaver somniferum HOM05D005120 ORTHO05D006174 1.1e-62 244.6 196 68.9
Atru.chr6.1567 Acer truncatum HOM05D005120 ORTHO05D006174 1.5e-62 244.2 209 60.8
Sed0007636 Sechium edule HOM05D005120 ORTHO05D006174 2.5e-62 243.4 245 56.3
Actinidia27272 Actinidia chinensis HOM05D005120 ORTHO05D006174 4.3e-62 242.7 215 60.9
MSTRG.11896 Avicennia marina HOM05D005120 ORTHO05D006174 5.6e-62 242.3 215 59.1
ClCG07G002270 Citrullus lanatus HOM05D005120 ORTHO05D006174 5.6e-62 242.3 201 64.2
Atru.chr6.1569 Acer truncatum HOM05D005120 ORTHO05D006174 9.5e-62 241.5 212 59.4
unitig_747.g21935 Utricularia gibba HOM05D005120 ORTHO05D006174 2.1e-61 240.4 215 60.9
SGA_v2.0_scaffold42G16013 Striga asiatica HOM05D005120 ORTHO05D006174 2.8e-61 240.0 301 48.2
CsaV3_3G030430 Cucumis sativus L. HOM05D005120 ORTHO05D006174 3.6e-61 239.6 247 55.5
MELO3C026723.2 Cucumis melo HOM05D005120 ORTHO05D006174 6.2e-61 238.8 237 56.5
AUR62007376 Chenopodium quinoa HOM05D005120 ORTHO05D006174 8.1e-61 238.4 175 69.1
Sed0003941 Sechium edule HOM05D005120 ORTHO05D006174 8.1e-61 238.4 214 60.3
arahy.Tifrunner.gnm1.ann1.PMQ83Q Arachis hypogaea HOM05D005120 ORTHO05D006174 1.8e-60 237.3 283 49.8
TPR.G6179 Trifolium pratense HOM05D005120 ORTHO05D006174 2.4e-60 236.9 262 53.1
Peaxi162Scf00408g00023 Petunia axillaris HOM05D005120 ORTHO05D006174 3.1e-60 236.5 183 67.8
SGA_v2.0_scaffold89G27426 Striga asiatica HOM05D005120 ORTHO05D006174 4.0e-60 236.1 219 56.2
CDE06G0533 Ceratophyllum demersum HOM05D005120 ORTHO05D006174 1.2e-59 234.6 210 60.0
BcaB07g32869 Brassica carinata HOM05D005120 ORTHO05D006174 2.6e-59 233.4 210 61.9
Ca_22546_v3 Cicer arietinum L. HOM05D005120 ORTHO05D006174 2.6e-59 233.4 176 68.8
Aa31LG2G11060 Aethionema arabicum HOM05D005120 ORTHO05D006174 9.9e-59 231.5 204 59.3
Glyma.09G211200 Glycine max HOM05D005120 ORTHO05D006174 6.0e-56 222.2 216 56.5
Phvul.002G132800 Phaseolus vulgaris HOM05D005120 ORTHO05D006174 6.0e-56 222.2 214 56.5
Glyma.01G009900 Glycine max HOM05D005120 ORTHO05D006174 1.3e-55 221.1 227 55.1
Hund11160 Selenicereus undatus HOM05D005120 ORTHO05D006174 2.3e-55 220.3 240 51.7
CSS0018999 Camellia sinensis var. sinensis HOM05D005120 ORTHO05D006174 9.6e-54 214.9 191 59.2
Lalb_Chr16g0380871 Lupinus albus HOM05D005120 ORTHO05D006174 2.8e-53 213.4 186 61.3
SMO347G0341 Selaginella moellendorffii HOM05D005120 ORTHO05D006174 3.6e-53 213.0 188 61.7
AagrBONN_evm.TU.Sc2ySwM_117.3701 Anthoceros agrestis HOM05D005120 ORTHO05D006174 4.2e-49 199.5 203 52.2
arahy.Tifrunner.gnm1.ann1.1W9K9Y Arachis hypogaea HOM05D005120 ORTHO05D006174 2.5e-46 190.3 191 52.9
arahy.Tifrunner.gnm1.ann1.5B6WJ4 Arachis hypogaea HOM05D005120 ORTHO05D006174 2.5e-46 190.3 191 52.9
Mapoly0008s0007 Marchantia polymorpha HOM05D005120 ORTHO05D006174 7.3e-46 188.7 209 51.2
Pp3c1_16500 Physcomitrium patens HOM05D005120 ORTHO05D006174 1.1e-44 184.9 209 51.2
Atru.chr6.1566 Acer truncatum HOM05D005120 ORTHO05D006174 2.3e-39 167.2 209 48.8
arahy.Tifrunner.gnm1.ann1.B01XES Arachis hypogaea HOM05D005120 ORTHO05D006174 1.5e-38 164.5 238 41.6
FAN13G2921 Fragaria x ananassa HOM05D005120 ORTHO05D006174 3.0e-31 140.2 217 41.9
Lalb_Chr16g0380881 Lupinus albus HOM05D005120 ORTHO05D006174 1.6e-29 134.4 225 37.3
PGR044G1750 Punica granatum HOM05D005120 ORTHO05D006174 6.9e-28 129.0 141 56.0
SEGI_28661 Sequoiadendron giganteum HOM05D005120 ORTHO05D006174 1.0e-26 125.2 99 68.7
Actinidia01339 Actinidia chinensis HOM05D005120 ORTHO05D006174 4.9e-26 122.9 128 53.1
CBR_g23153 Chara braunii HOM05D005120 ORTHO05D006174 2.5e-25 120.6 171 43.9
PRCOL_00000663 Prasinoderma coloniale HOM05D005120 ORTHO05D006174 3.5e-24 116.7 213 34.7
SEGI_09610 Sequoiadendron giganteum HOM05D005120 ORTHO05D006174 6.0e-24 115.9 95 60.0
CARHR291910 Cardamine hirsuta HOM05D005120 ORTHO05D006174 2.5e-22 110.5 83 66.3
Cre09.g394850 Chlamydomonas reinhardtii HOM05D005120 ORTHO05D006174 8.2e-21 105.5 222 36.5
SMO367G1009 Selaginella moellendorffii HOM05D005120 ORTHO05D006174 2.9e-18 97.1 166 36.1
AagrBONN_evm.TU.Sc2ySwM_368.2516 Anthoceros agrestis HOM05D005120 ORTHO05D006174 1.2e-16 91.7 191 33.5
Oeu023967.3 Olea europaea HOM05D005120 ORTHO05D006174 1.2e-16 91.7 97 54.6
Pp3c4_7680 Physcomitrium patens HOM05D005120 ORTHO05D006174 2.6e-11 73.9 231 29.9
PRCOL_00006607 Prasinoderma coloniale HOM05D005120 ORTHO05D006174 2.3e-07 60.8 119 39.5
CDE03G0049 Ceratophyllum demersum HOM05D005120 ORTHO05D006174 6.7e-07 59.3 67 53.7


User provided reference genes

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