Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb025030 Zea mays HOM05D006137 ORTHO05D007697 3.6e-203 711.4 385 100.0
Os10g0577700 Oryza sativa ssp. japonica HOM05D006137 ORTHO05D007697 7.9e-158 560.8 369 80.8
Dinv25255 Davidia involucrata HOM05D006137 ORTHO05D007697 1.3e-104 384.0 346 56.6
Lj3g0008594 Lotus japonicus HOM05D006137 ORTHO05D007697 6.6e-104 381.7 320 59.4
Aqoxy2G03876 Aquilegia oxysepala HOM05D006137 ORTHO05D007697 7.3e-103 378.3 323 57.9
TWI15G1160 Tripterygium wilfordii HOM05D006137 ORTHO05D007697 8.0e-102 374.8 370 53.8
Glyma.01G014900 Glycine max HOM05D006137 ORTHO05D007697 1.1e-101 374.4 321 58.6
arahy.Tifrunner.gnm1.ann1.3JZK2J Arachis hypogaea HOM05D006137 ORTHO05D007697 5.2e-101 372.1 308 59.1
arahy.Tifrunner.gnm1.ann1.J91B8N Arachis hypogaea HOM05D006137 ORTHO05D007697 5.2e-101 372.1 308 59.1
HPP92_014848 Vanilla planifolia HOM05D006137 ORTHO05D007697 5.2e-101 372.1 310 60.3
VMungo1215G0535 Vigna mungo HOM05D006137 ORTHO05D007697 5.2e-101 372.1 309 58.9
Thhalv10016768m.g Eutrema salsugineum HOM05D006137 ORTHO05D007697 3.4e-100 369.4 312 59.6
AT2G35500 Arabidopsis thaliana HOM05D006137 ORTHO05D007697 5.8e-100 368.6 315 59.4
FvH4_5g23010 Fragaria vesca HOM05D006137 ORTHO05D007697 7.5e-100 368.2 358 52.8
BcaB06g28845 Brassica carinata HOM05D006137 ORTHO05D007697 9.8e-100 367.9 312 59.6
MD06G1026400 Malus domestica HOM05D006137 ORTHO05D007697 9.8e-100 367.9 360 53.6
CSS0021967 Camellia sinensis var. sinensis HOM05D006137 ORTHO05D007697 1.3e-99 367.5 344 54.4
TAR629G2895 Trochodendron aralioides HOM05D006137 ORTHO05D007697 1.3e-99 367.5 319 57.7
Ciclev10001458m.g Citrus clementina HOM05D006137 ORTHO05D007697 1.7e-99 367.1 310 58.1
Phvul.002G137400 Phaseolus vulgaris HOM05D006137 ORTHO05D007697 1.7e-99 367.1 309 59.2
TPR.G19427 Trifolium pratense HOM05D006137 ORTHO05D007697 1.7e-99 367.1 308 57.8
Medtr5g029550 Medicago truncatula HOM05D006137 ORTHO05D007697 2.9e-99 366.3 378 52.4
AL4G31550 Arabidopsis lyrata HOM05D006137 ORTHO05D007697 6.4e-99 365.2 312 59.0
BolC4t27919H Brassica oleracea HOM05D006137 ORTHO05D007697 6.4e-99 365.2 312 59.3
BraA04t18192Z Brassica rapa HOM05D006137 ORTHO05D007697 6.4e-99 365.2 312 59.3
A04p26930 Brassica napus HOM05D006137 ORTHO05D007697 8.3e-99 364.8 312 59.3
Carub.0004s1719 Capsella rubella HOM05D006137 ORTHO05D007697 8.3e-99 364.8 312 59.0
CsaV3_3G001380 Cucumis sativus L. HOM05D006137 ORTHO05D007697 1.9e-98 363.6 334 54.5
Hma1.2p1_1027F.1_g249480 Hydrangea macrophylla HOM05D006137 ORTHO05D007697 1.9e-98 363.6 354 52.0
PSO782G3150 Papaver somniferum HOM05D006137 ORTHO05D007697 1.9e-98 363.6 312 58.3
CSS0050317 Camellia sinensis var. sinensis HOM05D006137 ORTHO05D007697 3.2e-98 362.8 297 58.6
RcHm_v2.0_Chr7g0211741 Rosa chinensis HOM05D006137 ORTHO05D007697 3.2e-98 362.8 343 53.6
CARHR129650 Cardamine hirsuta HOM05D006137 ORTHO05D007697 4.1e-98 362.5 313 58.1
FAN04G0555 Fragaria x ananassa HOM05D006137 ORTHO05D007697 4.1e-98 362.5 316 55.7
Sp4g17720 Schrenkiella parvula HOM05D006137 ORTHO05D007697 4.1e-98 362.5 312 58.3
CANSAT21G0548 Cannabis sativa HOM05D006137 ORTHO05D007697 5.4e-98 362.1 310 59.4
CANSAT21G0809 Cannabis sativa HOM05D006137 ORTHO05D007697 5.4e-98 362.1 310 59.4
COL.COLO4_16947 Corchorus olitorius HOM05D006137 ORTHO05D007697 7.0e-98 361.7 304 57.2
Peaxi162Scf00170g00615 Petunia axillaris HOM05D006137 ORTHO05D007697 7.0e-98 361.7 343 52.8
FAN08G1929 Fragaria x ananassa HOM05D006137 ORTHO05D007697 9.2e-98 361.3 348 52.6
Nitab4.5_0002190g0020 Nicotiana tabacum HOM05D006137 ORTHO05D007697 9.2e-98 361.3 367 51.5
CiPaw.11G098100 Carya illinoinensis HOM05D006137 ORTHO05D007697 1.2e-97 360.9 363 54.0
MELO3C013825.2 Cucumis melo HOM05D006137 ORTHO05D007697 1.2e-97 360.9 350 53.1
Lalb_Chr09g0325501 Lupinus albus HOM05D006137 ORTHO05D007697 1.2e-97 360.9 308 57.1
Solyc08g076410.4 Solanum lycopersicum HOM05D006137 ORTHO05D007697 1.2e-97 360.9 342 52.6
Sopen08g024990 Solanum pennellii HOM05D006137 ORTHO05D007697 1.2e-97 360.9 342 52.6
GSVIVG01013108001 Vitis vinifera HOM05D006137 ORTHO05D007697 1.2e-97 360.9 320 56.2
C04p64320 Brassica napus HOM05D006137 ORTHO05D007697 2.0e-97 360.1 356 54.2
BcaC02g07708 Brassica carinata HOM05D006137 ORTHO05D007697 2.7e-97 359.8 298 60.4
Psat2g138120 Pisum sativum HOM05D006137 ORTHO05D007697 2.7e-97 359.8 376 51.9
PGSC0003DMG400014792 Solanum tuberosum HOM05D006137 ORTHO05D007697 2.7e-97 359.8 384 50.0
Gorai.008G224300 Gossypium raimondii HOM05D006137 ORTHO05D007697 3.5e-97 359.4 349 53.3
Gohir.D12G208800 Gossypium hirsutum HOM05D006137 ORTHO05D007697 6.0e-97 358.6 345 54.2
Nn3g19394 Nelumbo nucifera HOM05D006137 ORTHO05D007697 6.0e-97 358.6 312 58.0
FAN18G2668 Fragaria x ananassa HOM05D006137 ORTHO05D007697 1.3e-96 357.5 304 56.9
Potri.003G096600 Populus trichocarpa HOM05D006137 ORTHO05D007697 1.3e-96 357.5 365 51.8
Rhsim11G0021000 Rhododendron simsii HOM05D006137 ORTHO05D007697 1.7e-96 357.1 384 52.3
Sabra03G0065200 Salix brachista HOM05D006137 ORTHO05D007697 3.0e-96 356.3 314 56.4
FAN13G2862 Fragaria x ananassa HOM05D006137 ORTHO05D007697 3.9e-96 355.9 333 53.8
Duzib068G1414 Durio zibethinus HOM05D006137 ORTHO05D007697 5.0e-96 355.5 312 56.1
Gohir.A12G206400 Gossypium hirsutum HOM05D006137 ORTHO05D007697 8.6e-96 354.8 345 53.6
ECA233G6209 Erigeron canadensis HOM05D006137 ORTHO05D007697 1.5e-95 354.0 369 50.9
FvH4_2g06760 Fragaria vesca HOM05D006137 ORTHO05D007697 3.3e-95 352.8 359 52.4
PSO063G4597 Papaver somniferum HOM05D006137 ORTHO05D007697 3.3e-95 352.8 303 57.4
PGR042G0393 Punica granatum HOM05D006137 ORTHO05D007697 3.3e-95 352.8 358 52.8
FAN18G2637 Fragaria x ananassa HOM05D006137 ORTHO05D007697 7.3e-95 351.7 360 50.6
EL10Ac2g03238 Beta vulgaris HOM05D006137 ORTHO05D007697 1.2e-94 350.9 336 53.6
Thecc.03G309800 Theobroma cacao HOM05D006137 ORTHO05D007697 1.6e-94 350.5 308 55.8
HanXRQChr04g0098961 Helianthus annuus HOM05D006137 ORTHO05D007697 2.1e-94 350.1 312 56.1
Atru.chr6.1520 Acer truncatum HOM05D006137 ORTHO05D007697 4.7e-94 349.0 305 56.7
CAN.G726.20 Capsicum annuum HOM05D006137 ORTHO05D007697 4.7e-94 349.0 371 49.3
Cc08_g03270 Coffea canephora HOM05D006137 ORTHO05D007697 1.4e-93 347.4 310 55.2
CDE06G2536 Ceratophyllum demersum HOM05D006137 ORTHO05D007697 1.8e-93 347.1 331 56.2
DCAR_008226 Daucus carota HOM05D006137 ORTHO05D007697 2.3e-93 346.7 302 54.6
Oeu017078.1 Olea europaea HOM05D006137 ORTHO05D007697 6.8e-93 345.1 296 56.8
Nitab4.5_0003416g0030 Nicotiana tabacum HOM05D006137 ORTHO05D007697 8.3e-91 338.2 389 47.6
THA.LOC104814417 Tarenaya hassleriana HOM05D006137 ORTHO05D007697 1.4e-90 337.4 315 54.9
ClCG10G001310 Citrullus lanatus HOM05D006137 ORTHO05D007697 1.9e-90 337.0 428 45.1
Sed0022354 Sechium edule HOM05D006137 ORTHO05D007697 3.2e-90 336.3 327 53.5
MSTRG.24846 Avicennia marina HOM05D006137 ORTHO05D007697 1.7e-88 330.5 313 55.9
Ah.09g233490 Amaranthus hybridus HOM05D006137 ORTHO05D007697 5.1e-88 328.9 327 52.9
Aa31LG9G15490 Aethionema arabicum HOM05D006137 ORTHO05D007697 5.6e-87 325.5 268 59.3
Lsat_1_v5_gn_6_3681 Lactuca sativa HOM05D006137 ORTHO05D007697 8.9e-85 318.2 378 46.8
unitig_748.g7545 Utricularia gibba HOM05D006137 ORTHO05D007697 8.9e-85 318.2 383 45.7
Migut.A01172 Erythranthe guttata HOM05D006137 ORTHO05D007697 1.3e-83 314.3 310 53.5
Sc24g0002950 Simmondsia chinensis HOM05D006137 ORTHO05D007697 1.9e-82 310.5 284 55.6
vmacro08163 Vaccinium macrocarpon HOM05D006137 ORTHO05D007697 5.4e-82 308.9 272 57.4
ATR0829G218 Amborella trichopoda HOM05D006137 ORTHO05D007697 9.2e-82 308.1 277 57.0
Eucgr.E00233 Eucalyptus grandis HOM05D006137 ORTHO05D007697 1.2e-81 307.8 290 54.5
Prupe.5G028300 Prunus persica HOM05D006137 ORTHO05D007697 1.6e-81 307.4 346 48.8
SEGI_14560 Sequoiadendron giganteum HOM05D006137 ORTHO05D007697 2.1e-81 307.0 295 53.2
QL12p001513 Quercus lobata HOM05D006137 ORTHO05D007697 1.7e-80 303.9 289 55.0
FAN24G0436 Fragaria x ananassa HOM05D006137 ORTHO05D007697 2.1e-78 297.0 332 48.8
SGA_v2.0_scaffold36G14297 Striga asiatica HOM05D006137 ORTHO05D007697 3.1e-77 293.1 266 56.8
Oeu019613.1 Olea europaea HOM05D006137 ORTHO05D007697 7.1e-74 282.0 314 48.1
Mapoly0006s0263 Marchantia polymorpha HOM05D006137 ORTHO05D007697 1.1e-69 268.1 378 41.5
Oeu002327.1 Olea europaea HOM05D006137 ORTHO05D007697 5.3e-69 265.8 225 59.1
Oeu019614.1 Olea europaea HOM05D006137 ORTHO05D007697 2.6e-68 263.5 324 45.4
FAN20G1935 Fragaria x ananassa HOM05D006137 ORTHO05D007697 2.2e-67 260.4 362 45.3
Lj2A232T29 Lonicera japonica HOM05D006137 ORTHO05D007697 2.2e-67 260.4 327 44.0
SMO228G0118 Selaginella moellendorffii HOM05D006137 ORTHO05D007697 4.2e-66 256.1 302 45.7
AagrBONN_evm.TU.Sc2ySwM_344.1996 Anthoceros agrestis HOM05D006137 ORTHO05D007697 1.0e-64 251.5 301 43.9
Pp3c12_17740 Physcomitrium patens HOM05D006137 ORTHO05D007697 6.7e-64 248.8 380 40.0
Eucgr.E00231 Eucalyptus grandis HOM05D006137 ORTHO05D007697 2.6e-60 236.9 268 47.8
Haze_08142 Corylus avellana HOM05D006137 ORTHO05D007697 7.6e-60 235.3 513 34.1
Hund09822 Selenicereus undatus HOM05D006137 ORTHO05D007697 2.1e-54 217.2 157 68.8
AUR62002644 Chenopodium quinoa HOM05D006137 ORTHO05D007697 7.6e-52 208.8 147 70.7
Ca_25185_v3 Cicer arietinum L. HOM05D006137 ORTHO05D007697 6.9e-45 185.7 208 47.6
C03p78000 Brassica napus HOM05D006137 ORTHO05D007697 9.3e-42 175.3 159 55.3
Manes.15G185701 Manihot esculenta HOM05D006137 ORTHO05D007697 2.7e-41 173.7 203 45.3
BolC1t02019H Brassica oleracea HOM05D006137 ORTHO05D007697 2.4e-37 160.6 161 55.9
BolC3t20061H Brassica oleracea HOM05D006137 ORTHO05D007697 1.6e-33 147.9 163 51.5
CBR_g18978 Chara braunii HOM05D006137 ORTHO05D007697 1.6e-33 147.9 178 48.3
C01p20920 Brassica napus HOM05D006137 ORTHO05D007697 4.7e-33 146.4 161 51.6
Oeu033557.2 Olea europaea HOM05D006137 ORTHO05D007697 5.1e-32 142.9 205 40.5
AUR62002645 Chenopodium quinoa HOM05D006137 ORTHO05D007697 2.8e-30 137.1 211 38.4
AUR62040998 Chenopodium quinoa HOM05D006137 ORTHO05D007697 5.3e-29 132.9 136 46.3
Hund09821 Selenicereus undatus HOM05D006137 ORTHO05D000006 5.5e-26 122.9 129 44.2
MCO11G470 Micromonas commoda HOM05D006137 ORTHO05D007697 6.1e-25 119.4 179 35.2
AUR62040999 Chenopodium quinoa HOM05D006137 ORTHO05D007697 1.0e-24 118.6 89 69.7
Medtr1g009450 Medicago truncatula HOM05D006137 ORTHO05D007697 3.7e-22 110.2 124 50.8
PRCOL_00002339 Prasinoderma coloniale HOM05D006137 ORTHO05D007697 2.0e-20 104.4 168 35.1
Glyma.07G152633 Glycine max HOM05D006137 ORTHO05D007697 7.7e-20 102.4 90 56.7
BcaC09g50780 Brassica carinata HOM05D006137 ORTHO05D007697 2.1e-09 67.8 97 47.4
C02p41610 Brassica napus HOM05D006137 ORTHO05D007697 2.1e-09 67.8 37 75.7
BolC2t10179H Brassica oleracea HOM05D006137 ORTHO05D007697 2.1e-09 67.8 37 75.7
BolC2t11174H Brassica oleracea HOM05D006137 ORTHO05D007697 7.5e-07 59.3 31 74.2
Mapoly0089s0033 Marchantia polymorpha HOM05D002058 ORTHO05D003758 2.8e-06 57.4 88 40.9


User provided reference genes

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