Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb024930 Zea mays HOM05D003676 ORTHO05D004262 5.3e-183 644.4 358 100.0
Zm00001eb224920 Zea mays HOM05D003676 ORTHO05D004262 4.6e-134 481.9 368 81.2
Os10g0577400 Oryza sativa ssp. japonica HOM05D003676 ORTHO05D004262 2.3e-61 240.4 370 52.4
Cc07_g10720 Coffea canephora HOM05D003676 ORTHO05D004262 2.0e-36 157.5 375 42.1
Lj2A468T73 Lonicera japonica HOM05D003676 ORTHO05D004262 1.4e-34 151.4 380 39.7
Nn5g30150 Nelumbo nucifera HOM05D003676 ORTHO05D004262 2.4e-34 150.6 374 40.4
QL06p032755 Quercus lobata HOM05D003676 ORTHO05D004262 4.1e-34 149.8 364 38.7
CiPaw.07G058500 Carya illinoinensis HOM05D003676 ORTHO05D004262 7.0e-34 149.1 368 41.3
MBI05_g37447_MAGBIO Magnolia biondii HOM05D003676 ORTHO05D004262 7.0e-34 149.1 361 40.2
Eucgr.I02350 Eucalyptus grandis HOM05D003676 ORTHO05D004262 3.5e-33 146.7 369 40.9
HPP92_020902 Vanilla planifolia HOM05D003676 ORTHO05D004262 3.5e-33 146.7 367 37.1
Dinv33627 Davidia involucrata HOM05D003676 ORTHO05D004262 6.0e-33 146.0 356 38.5
Sopen02g028680 Solanum pennellii HOM05D003676 ORTHO05D004262 6.0e-33 146.0 370 38.6
Solyc02g083890.4 Solanum lycopersicum HOM05D003676 ORTHO05D004262 7.8e-33 145.6 370 36.5
Aqoxy6G02292 Aquilegia oxysepala HOM05D003676 ORTHO05D004262 1.7e-32 144.4 348 38.5
Nn1g05889 Nelumbo nucifera HOM05D003676 ORTHO05D004262 2.3e-32 144.1 345 42.6
AUR62029464 Chenopodium quinoa HOM05D003676 ORTHO05D004262 3.0e-32 143.7 319 39.2
Dinv40087 Davidia involucrata HOM05D003676 ORTHO05D004262 3.9e-32 143.3 365 36.4
TAR376G0994 Trochodendron aralioides HOM05D003676 ORTHO05D004262 5.0e-32 142.9 361 37.1
CSS0022685 Camellia sinensis var. sinensis HOM05D003676 ORTHO05D004262 1.5e-31 141.4 378 37.0
Lalb_Chr05g0212401 Lupinus albus HOM05D003676 ORTHO05D004262 1.5e-31 141.4 371 37.5
Hund16490 Selenicereus undatus HOM05D003676 ORTHO05D004262 1.5e-31 141.4 380 38.9
ATR0149G006 Amborella trichopoda HOM05D003676 ORTHO05D004262 1.9e-31 141.0 369 40.7
Cpa.g.sc6.251 Carica papaya HOM05D003676 ORTHO05D004262 1.9e-31 141.0 372 36.0
MD15G1246000 Malus domestica HOM05D003676 ORTHO05D004262 1.9e-31 141.0 361 36.8
TAR628G0168 Trochodendron aralioides HOM05D003676 ORTHO05D004262 1.9e-31 141.0 362 41.2
MD02G1132500 Malus domestica HOM05D003676 ORTHO05D004262 3.3e-31 140.2 374 37.7
RcHm_v2.0_Chr2g0099451 Rosa chinensis HOM05D003676 ORTHO05D004262 3.3e-31 140.2 353 37.7
Duzib187G0981 Durio zibethinus HOM05D003676 ORTHO05D004262 5.6e-31 139.4 372 40.1
TAR381G0332 Trochodendron aralioides HOM05D003676 ORTHO05D004262 5.6e-31 139.4 361 41.0
TWI09G1351 Tripterygium wilfordii HOM05D003676 ORTHO05D004262 7.3e-31 139.0 298 39.9
Ciclev10025949m.g Citrus clementina HOM05D003676 ORTHO05D004262 1.2e-30 138.3 345 38.0
Sed0017342 Sechium edule HOM05D003676 ORTHO05D004262 1.2e-30 138.3 366 37.4
CSS0021991 Camellia sinensis var. sinensis HOM05D003676 ORTHO05D004262 1.6e-30 137.9 378 38.1
CAN.G1671.14 Capsicum annuum HOM05D003676 ORTHO05D004262 1.6e-30 137.9 371 40.2
Manes.01G145700 Manihot esculenta HOM05D003676 ORTHO05D004262 1.6e-30 137.9 373 34.9
Thecc.01G019000 Theobroma cacao HOM05D003676 ORTHO05D004262 2.1e-30 137.5 369 40.4
Oeu063192.2 Olea europaea HOM05D003676 ORTHO05D004262 3.6e-30 136.7 354 35.9
PSO675G7127 Papaver somniferum HOM05D003676 ORTHO05D004262 3.6e-30 136.7 357 40.1
vmacro18414 Vaccinium macrocarpon HOM05D003676 ORTHO05D004262 3.6e-30 136.7 350 40.3
Cfa006972 Carpinus fangiana HOM05D003676 ORTHO05D004262 4.7e-30 136.3 362 39.0
PSO541G5658 Papaver somniferum HOM05D003676 ORTHO05D004262 4.7e-30 136.3 357 40.9
ClCG10G000750 Citrullus lanatus HOM05D003676 ORTHO05D004262 6.2e-30 136.0 376 39.6
Lj4g0000664 Lotus japonicus HOM05D003676 ORTHO05D004262 8.1e-30 135.6 366 36.6
unitig_736.g22721 Utricularia gibba HOM05D003676 ORTHO05D004262 2.3e-29 134.0 348 41.4
Potri.005G114100 Populus trichocarpa HOM05D003676 ORTHO05D004262 6.8e-29 132.5 374 38.5
Hma1.2p1_0258F.1_g104145 Hydrangea macrophylla HOM05D003676 ORTHO05D004262 1.2e-28 131.7 369 34.7
CANSAT01G0038 Cannabis sativa HOM05D003676 ORTHO05D004262 1.5e-28 131.3 376 39.4
Duzib264G0036 Durio zibethinus HOM05D003676 ORTHO05D004262 2.0e-28 131.0 348 38.8
CsaV3_3G000800 Cucumis sativus L. HOM05D003676 ORTHO05D004262 4.4e-28 129.8 378 37.6
Prupe.7G168100 Prunus persica HOM05D003676 ORTHO05D004262 4.4e-28 129.8 361 36.6
MELO3C013767.2 Cucumis melo HOM05D003676 ORTHO05D004262 7.5e-28 129.0 365 37.5
Oeu012589.1 Olea europaea HOM05D003676 ORTHO05D004262 7.5e-28 129.0 355 39.2
Psat4g099080 Pisum sativum HOM05D003676 ORTHO05D004262 9.9e-28 128.6 349 36.1
SalBow3G1193 Salvia bowleyana HOM05D003676 ORTHO05D004262 1.3e-27 128.3 343 37.0
DCAR_016607 Daucus carota HOM05D003676 ORTHO05D004262 2.2e-27 127.5 370 38.9
Manes.02G104500 Manihot esculenta HOM05D003676 ORTHO05D004262 2.2e-27 127.5 355 36.6
Gohir.A02G170700 Gossypium hirsutum HOM05D003676 ORTHO05D004262 2.9e-27 127.1 306 38.2
FAN26G1220 Fragaria x ananassa HOM05D003676 ORTHO05D004262 4.9e-27 126.3 349 37.2
PGSC0003DMG400003640 Solanum tuberosum HOM05D003676 ORTHO05D004262 4.9e-27 126.3 374 35.8
CDE05G2608 Ceratophyllum demersum HOM05D003676 ORTHO05D004262 6.4e-27 125.9 296 39.5
Sc07g0000980 Simmondsia chinensis HOM05D003676 ORTHO05D004262 6.4e-27 125.9 306 41.5
Nitab4.5_0003382g0020 Nicotiana tabacum HOM05D003676 ORTHO05D004262 1.1e-26 125.2 367 38.4
Gorai.008G063100 Gossypium raimondii HOM05D003676 ORTHO05D004262 1.9e-26 124.4 341 38.7
Actinidia17444 Actinidia chinensis HOM05D003676 ORTHO05D004262 2.4e-26 124.0 363 34.7
PGR119G1864 Punica granatum HOM05D003676 ORTHO05D004262 2.4e-26 124.0 354 39.5
Nitab4.5_0005660g0010 Nicotiana tabacum HOM05D003676 ORTHO05D004262 4.1e-26 123.2 363 35.8
Sabra05G0093400 Salix brachista HOM05D003676 ORTHO05D004262 5.4e-26 122.9 361 34.9
Carub.0008s2827 Capsella rubella HOM05D003676 ORTHO05D004262 7.1e-26 122.5 339 35.7
Rhsim10G0212200 Rhododendron simsii HOM05D003676 ORTHO05D004262 7.1e-26 122.5 379 38.3
Hund14045 Selenicereus undatus HOM05D003676 ORTHO05D004262 7.1e-26 122.5 356 36.8
Gohir.D12G060000 Gossypium hirsutum HOM05D003676 ORTHO05D004262 9.2e-26 122.1 341 38.4
MSTRG.2714 Avicennia marina HOM05D003676 ORTHO05D004262 1.2e-25 121.7 354 36.7
FvH4_1g11840 Fragaria vesca HOM05D003676 ORTHO05D004262 1.2e-25 121.7 361 38.0
Actinidia30997 Actinidia chinensis HOM05D003676 ORTHO05D004262 2.7e-25 120.6 369 33.3
FAN23G0443 Fragaria x ananassa HOM05D003676 ORTHO05D004262 3.5e-25 120.2 348 36.5
FAN19G1818 Fragaria x ananassa HOM05D003676 ORTHO05D004262 4.6e-25 119.8 351 37.3
Gohir.D03G009400 Gossypium hirsutum HOM05D003676 ORTHO05D004262 4.6e-25 119.8 296 36.5
MBI05_g30743_MAGBIO Magnolia biondii HOM05D003676 ORTHO05D004262 6.0e-25 119.4 345 35.9
Rhsim08G0033700 Rhododendron simsii HOM05D003676 ORTHO05D004262 6.0e-25 119.4 352 36.1
Atru.chr3.798 Acer truncatum HOM05D003676 ORTHO05D004262 7.8e-25 119.0 359 37.0
Glyma.01G166300 Glycine max HOM05D003676 ORTHO05D004262 1.0e-24 118.6 371 35.3
Medtr8g075950 Medicago truncatula HOM05D003676 ORTHO05D004262 1.0e-24 118.6 366 39.3
Gohir.A12G059600 Gossypium hirsutum HOM05D003676 ORTHO05D004262 1.3e-24 118.2 341 38.1
Gohir.D11G183000 Gossypium hirsutum HOM05D003676 ORTHO05D004262 1.7e-24 117.9 294 36.1
Peaxi162Scf00083g00320 Petunia axillaris HOM05D003676 ORTHO05D004262 1.7e-24 117.9 356 39.0
TPR.G30058 Trifolium pratense HOM05D003676 ORTHO05D004262 1.7e-24 117.9 364 37.4
Gohir.A11G175400 Gossypium hirsutum HOM05D003676 ORTHO05D004262 2.3e-24 117.5 346 33.5
COL.COLO4_21910 Corchorus olitorius HOM05D003676 ORTHO05D004262 3.0e-24 117.1 356 34.0
CSS0018215 Camellia sinensis var. sinensis HOM05D003676 ORTHO05D004262 3.9e-24 116.7 353 38.0
Hma1.2p1_0956F.1_g241320 Hydrangea macrophylla HOM05D003676 ORTHO05D004262 5.1e-24 116.3 384 33.6
SEGI_09532 Sequoiadendron giganteum HOM05D003676 ORTHO05D004262 5.1e-24 116.3 322 35.4
SEGI_21114 Sequoiadendron giganteum HOM05D003676 ORTHO05D004262 5.1e-24 116.3 322 35.4
Gorai.003G009600 Gossypium raimondii HOM05D003676 ORTHO05D004262 8.6e-24 115.5 315 35.2
Oeu048461.1 Olea europaea HOM05D003676 ORTHO05D004262 8.6e-24 115.5 350 38.9
AUR62003369 Chenopodium quinoa HOM05D003676 ORTHO05D004262 1.1e-23 115.2 363 34.2
VMungo0251G0225 Vigna mungo HOM05D003676 ORTHO05D004262 1.1e-23 115.2 349 37.0
Glyma.11G077200 Glycine max HOM05D003676 ORTHO05D004262 5.6e-23 112.8 369 38.2
Gorai.007G195000 Gossypium raimondii HOM05D003676 ORTHO05D004262 7.3e-23 112.5 294 35.4
Phvul.003G262100 Phaseolus vulgaris HOM05D003676 ORTHO05D004262 9.5e-23 112.1 351 38.5
Glyma.02G048700 Glycine max HOM05D003676 ORTHO05D004262 1.6e-22 111.3 367 34.9
ECA232G1625 Erigeron canadensis HOM05D003676 ORTHO05D004262 2.8e-22 110.5 367 31.9
Sc16g0002190 Simmondsia chinensis HOM05D003676 ORTHO05D004262 2.8e-22 110.5 302 34.8
Aa31LG1G14730 Aethionema arabicum HOM05D003676 ORTHO05D004262 8.1e-22 109.0 365 38.1
arahy.Tifrunner.gnm1.ann1.3LB61T Arachis hypogaea HOM05D003676 ORTHO05D004262 8.1e-22 109.0 345 36.5
arahy.Tifrunner.gnm1.ann1.CCI0LY Arachis hypogaea HOM05D003676 ORTHO05D004262 8.1e-22 109.0 346 36.4
Glyma.16G128800 Glycine max HOM05D003676 ORTHO05D004262 1.4e-21 108.2 380 33.9
unitig_899.g14713 Utricularia gibba HOM05D003676 ORTHO05D004262 2.4e-21 107.5 313 35.1
CARHR281500 Cardamine hirsuta HOM05D003676 ORTHO05D004262 5.2e-21 106.3 359 37.9
FAN28G1902 Fragaria x ananassa HOM05D003676 ORTHO05D004262 1.5e-20 104.8 347 36.3
HanXRQChr09g0256601 Helianthus annuus HOM05D003676 ORTHO05D004262 1.5e-20 104.8 347 33.1
TWI53G0168 Tripterygium wilfordii HOM05D003676 ORTHO05D004262 1.5e-20 104.8 361 34.6
Haze_03763 Corylus avellana HOM05D003676 ORTHO05D004262 2.6e-20 104.0 186 44.6
SGA_v2.0_scaffold78G25382 Striga asiatica HOM05D003676 ORTHO05D004262 3.4e-20 103.6 364 31.3
Gohir.D11G182900 Gossypium hirsutum HOM05D003676 ORTHO05D004262 5.8e-20 102.8 376 31.9
AT5G66230 Arabidopsis thaliana HOM05D003676 ORTHO05D003783 7.6e-20 102.4 376 35.1
A09p10110 Brassica napus HOM05D003676 ORTHO05D004262 7.6e-20 102.4 345 38.0
CDE05G0776 Ceratophyllum demersum HOM05D003676 ORTHO05D004262 7.6e-20 102.4 283 36.0
Actinidia22976 Actinidia chinensis HOM05D003676 ORTHO05D004262 1.7e-19 101.3 275 40.0
Gorai.007G194900 Gossypium raimondii HOM05D003676 ORTHO05D004262 1.7e-19 101.3 376 31.9
Ca_25824_v3 Cicer arietinum L. HOM05D003676 ORTHO05D004262 2.9e-19 100.5 348 34.8
SHI32179 Sapria himalayana HOM05D003676 ORTHO05D004262 2.9e-19 100.5 326 34.4
C09p11980 Brassica napus HOM05D003676 ORTHO05D004262 3.8e-19 100.1 350 36.9
THA.LOC104819178 Tarenaya hassleriana HOM05D003676 ORTHO05D004262 3.8e-19 100.1 355 33.0
BraA09t36654Z Brassica rapa HOM05D003676 ORTHO05D004262 8.4e-19 99.0 349 37.8
Lj4A218T52 Lonicera japonica HOM05D003676 ORTHO05D004262 8.4e-19 99.0 344 31.4
Phvul.002G108800 Phaseolus vulgaris HOM05D003676 ORTHO05D004262 8.4e-19 99.0 340 32.6
Ah.03g148760 Amaranthus hybridus HOM05D003676 ORTHO05D004262 1.1e-18 98.6 311 36.3
GSVIVG01018782001 Vitis vinifera HOM05D003676 ORTHO05D004262 1.1e-18 98.6 266 35.3
BolC9t54086H Brassica oleracea HOM05D003676 ORTHO05D004262 1.4e-18 98.2 353 37.7
TPR.G18183 Trifolium pratense HOM05D003676 ORTHO05D004262 1.9e-18 97.8 352 34.1
Lsat_1_v5_gn_3_74521 Lactuca sativa HOM05D003676 ORTHO05D004262 5.4e-18 96.3 354 31.1
Migut.H01153 Erythranthe guttata HOM05D003676 ORTHO05D004262 3.5e-17 93.6 374 35.3
AL5G31630 Arabidopsis lyrata HOM05D003676 ORTHO05D004262 7.8e-17 92.4 354 30.5
Thhalv10004614m.g Eutrema salsugineum HOM05D003676 ORTHO05D004262 1.0e-16 92.0 369 31.4
HanXRQChr15g0487251 Helianthus annuus HOM05D003676 ORTHO05D004262 1.7e-16 91.3 346 31.8
Sp2g30470 Schrenkiella parvula HOM05D003676 ORTHO05D004262 1.7e-16 91.3 359 34.8
Ca_22374_v3 Cicer arietinum L. HOM05D003676 ORTHO05D004262 3.0e-16 90.5 246 36.6
Medtr5g022010 Medicago truncatula HOM05D003676 ORTHO05D004262 2.5e-15 87.4 358 30.7
SEGI_24904 Sequoiadendron giganteum HOM05D003676 ORTHO05D004262 3.3e-15 87.0 306 31.0
AT3G51230 Arabidopsis thaliana HOM05D003676 ORTHO05D004262 2.8e-14 84.0 149 40.9
AL8G45300 Arabidopsis lyrata HOM05D003676 ORTHO05D004262 3.6e-14 83.6 154 43.5
Zm00001eb167470 Zea mays HOM05D003676 ORTHO05D004262 6.2e-14 82.8 56 78.6
Lsat_1_v5_gn_4_146360 Lactuca sativa HOM05D003676 ORTHO05D004262 1.4e-13 81.6 266 33.1
A01p23560 Brassica napus HOM05D003676 ORTHO05D004262 2.4e-13 80.9 154 44.2
BraA01t02262Z Brassica rapa HOM05D003676 ORTHO05D004262 2.4e-13 80.9 154 44.2
Potri.007G057800 Populus trichocarpa HOM05D003676 ORTHO05D004262 2.4e-13 80.9 362 31.8
BcaC09g50089 Brassica carinata HOM05D003676 ORTHO05D004262 3.1e-13 80.5 146 43.8
BcaNung00393 Brassica carinata HOM05D003676 ORTHO05D004262 3.1e-13 80.5 151 44.4
C01p29220 Brassica napus HOM05D003676 ORTHO05D004262 3.1e-13 80.5 146 43.8
Nn1g05888 Nelumbo nucifera HOM05D003676 ORTHO05D004262 3.1e-13 80.5 368 28.8
CARHR160810 Cardamine hirsuta HOM05D003676 ORTHO05D004262 5.2e-13 79.7 147 44.2
DCAR_025998 Daucus carota HOM05D003676 ORTHO05D004262 6.9e-13 79.3 263 34.2
Carub.0005s1760 Capsella rubella HOM05D003676 ORTHO05D004262 2.0e-12 77.8 147 45.6
Lalb_Chr09g0321731 Lupinus albus HOM05D003676 ORTHO05D004262 7.6e-12 75.9 367 30.2
ECA246G1385 Erigeron canadensis HOM05D003676 ORTHO05D004262 1.3e-11 75.1 240 32.5
Nitab4.5_0000188g0110 Nicotiana tabacum HOM05D003676 ORTHO05D004262 2.9e-11 73.9 146 42.5
Psat2g154560 Pisum sativum HOM05D003676 ORTHO05D004262 6.4e-11 72.8 347 32.9
PGSC0003DMG400023891 Solanum tuberosum HOM05D003676 ORTHO05D004262 6.4e-11 72.8 300 29.0
Solyc02g062170.3 Solanum lycopersicum HOM05D003676 ORTHO05D004262 1.1e-10 72.0 297 30.0
Sp5g10990 Schrenkiella parvula HOM05D003676 ORTHO05D004262 1.9e-10 71.2 353 29.7
Mapoly0004s0127 Marchantia polymorpha HOM05D003676 ORTHO05D030105 2.1e-09 67.8 428 27.3
Nitab4.5_0002337g0030 Nicotiana tabacum HOM05D003676 ORTHO05D004262 4.6e-09 66.6 109 44.0
Sopen02g013140 Solanum pennellii HOM05D003676 ORTHO05D004262 4.6e-09 66.6 297 29.3
Atru.chr1.3640 Acer truncatum HOM05D003676 ORTHO05D004262 7.8e-09 65.9 116 47.4
RcHm_v2.0_Chr6g0272671 Rosa chinensis HOM05D003676 ORTHO05D004262 9.6e-07 58.9 103 40.8
Gorai.010G060700 Gossypium raimondii HOM05D003676 ORTHO05D004262 2.8e-06 57.4 115 42.6


User provided reference genes

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