Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb024320 Zea mays HOM05D003720 ORTHO05D019489 1.9e-78 295.8 151 100.0
Zm00001eb390320 Zea mays HOM05D003720 ORTHO05D005312 1.2e-64 250.0 146 88.4
Zm00001eb383750 Zea mays HOM05D003720 ORTHO05D019489 1.0e-39 167.2 96 86.5
PGSC0003DMG400013949 Solanum tuberosum HOM05D003720 ORTHO05D005312 1.2e-37 160.2 154 54.5
MSTRG.6069 Avicennia marina HOM05D003720 ORTHO05D005312 2.7e-37 159.1 155 52.9
TAR383G0813 Trochodendron aralioides HOM05D003720 ORTHO05D005312 3.6e-37 158.7 150 55.3
Actinidia07451 Actinidia chinensis HOM05D003720 ORTHO05D005312 1.3e-36 156.8 155 56.1
unitig_22.g6632 Utricularia gibba HOM05D003720 ORTHO05D005312 1.3e-36 156.8 156 53.2
Sopen08g011820 Solanum pennellii HOM05D003720 ORTHO05D005312 1.8e-36 156.4 154 53.2
GSVIVG01015441001 Vitis vinifera HOM05D003720 ORTHO05D005312 1.8e-36 156.4 151 55.0
Nn8g39280 Nelumbo nucifera HOM05D003720 ORTHO05D005312 2.3e-36 156.0 154 54.5
CDE07G1715 Ceratophyllum demersum HOM05D003720 ORTHO05D005312 3.0e-36 155.6 151 55.6
SalBow6G2056 Salvia bowleyana HOM05D003720 ORTHO05D005312 3.9e-36 155.2 152 57.2
CAN.G368.4 Capsicum annuum HOM05D003720 ORTHO05D005312 5.1e-36 154.8 154 53.9
QL02p086231 Quercus lobata HOM05D003720 ORTHO05D005312 5.1e-36 154.8 140 57.1
FAN23G2146 Fragaria x ananassa HOM05D003720 ORTHO05D005312 1.1e-35 153.7 141 56.0
FvH4_1g04290 Fragaria vesca HOM05D003720 ORTHO05D005312 2.5e-35 152.5 141 56.0
FAN19G2601 Fragaria x ananassa HOM05D003720 ORTHO05D005312 2.5e-35 152.5 141 56.0
Lalb_Chr12g0197621 Lupinus albus HOM05D003720 ORTHO05D005312 2.5e-35 152.5 150 54.0
AUR62027382 Chenopodium quinoa HOM05D003720 ORTHO05D005312 5.7e-35 151.4 161 51.6
AUR62031297 Chenopodium quinoa HOM05D003720 ORTHO05D005312 7.4e-35 151.0 158 51.3
Gohir.A06G060266 Gossypium hirsutum HOM05D003720 ORTHO05D019489 7.4e-35 151.0 127 57.5
CiPaw.03G235900 Carya illinoinensis HOM05D003720 ORTHO05D005312 9.7e-35 150.6 125 59.2
AT2G26890 Arabidopsis thaliana HOM05D003720 ORTHO05D005312 1.3e-34 150.2 136 58.8
FAN26G1450 Fragaria x ananassa HOM05D003720 ORTHO05D005312 1.3e-34 150.2 141 54.6
Sed0024242 Sechium edule HOM05D003720 ORTHO05D005312 1.3e-34 150.2 138 56.5
Cpa.g.sc23.151 Carica papaya HOM05D003720 ORTHO05D019489 1.6e-34 149.8 152 53.3
Migut.J01184 Erythranthe guttata HOM05D003720 ORTHO05D005312 1.6e-34 149.8 151 52.3
Thhalv10001876m.g Eutrema salsugineum HOM05D003720 ORTHO05D005312 1.6e-34 149.8 134 58.2
AL4G20110 Arabidopsis lyrata HOM05D003720 ORTHO05D005312 2.2e-34 149.4 141 56.0
SGA_v2.0_scaffold45G17079 Striga asiatica HOM05D003720 ORTHO05D005312 2.2e-34 149.4 147 56.5
FAN28G0537 Fragaria x ananassa HOM05D003720 ORTHO05D005312 2.8e-34 149.1 142 54.2
Ca_02544_v3 Cicer arietinum L. HOM05D003720 ORTHO05D005312 3.7e-34 148.7 125 60.0
DCAR_028737 Daucus carota HOM05D003720 ORTHO05D005312 3.7e-34 148.7 159 50.9
Manes.03G068200 Manihot esculenta HOM05D003720 ORTHO05D005312 4.8e-34 148.3 146 54.1
Glyma.05G012400 Glycine max HOM05D003720 ORTHO05D005312 6.3e-34 147.9 142 55.6
Gohir.D06G058501 Gossypium hirsutum HOM05D003720 ORTHO05D005312 6.3e-34 147.9 125 56.8
Gorai.010G068600 Gossypium raimondii HOM05D003720 ORTHO05D005312 6.3e-34 147.9 125 56.8
Potri.018G072600 Populus trichocarpa HOM05D003720 ORTHO05D005312 6.3e-34 147.9 125 57.6
Prupe.7G234400 Prunus persica HOM05D003720 ORTHO05D005312 6.3e-34 147.9 136 57.4
RcHm_v2.0_Chr2g0089861 Rosa chinensis HOM05D003720 ORTHO05D005312 6.3e-34 147.9 143 55.9
BcaB02g10050 Brassica carinata HOM05D003720 ORTHO05D005312 8.2e-34 147.5 140 57.1
MD15G1181200 Malus domestica HOM05D003720 ORTHO05D005312 8.2e-34 147.5 136 56.6
arahy.Tifrunner.gnm1.ann1.S8F21X Arachis hypogaea HOM05D003720 ORTHO05D005312 1.1e-33 147.1 148 52.0
Carub.0004s0739 Capsella rubella HOM05D003720 ORTHO05D005312 1.1e-33 147.1 135 57.0
PSO357G0216 Papaver somniferum HOM05D003720 ORTHO05D005312 1.1e-33 147.1 154 52.6
Phvul.003G176300 Phaseolus vulgaris HOM05D003720 ORTHO05D005312 1.1e-33 147.1 144 55.6
VMungo1215G1596 Vigna mungo HOM05D003720 ORTHO05D005312 1.1e-33 147.1 141 56.7
Duzib168G1140 Durio zibethinus HOM05D003720 ORTHO05D005312 1.4e-33 146.7 128 57.0
PSO170G5328 Papaver somniferum HOM05D003720 ORTHO05D005312 1.4e-33 146.7 154 52.6
THA.LOC104809021 Tarenaya hassleriana HOM05D003720 ORTHO05D005312 1.4e-33 146.7 151 55.0
Thecc.09G115700 Theobroma cacao HOM05D003720 ORTHO05D005312 1.8e-33 146.4 128 56.2
Aa31LG5G8890 Aethionema arabicum HOM05D003720 ORTHO05D005312 2.4e-33 146.0 141 54.6
arahy.Tifrunner.gnm1.ann1.F3YJTF Arachis hypogaea HOM05D003720 ORTHO05D005312 2.4e-33 146.0 146 52.7
A07p17900 Brassica napus HOM05D003720 ORTHO05D005312 2.4e-33 146.0 140 55.7
BraA07t29508Z Brassica rapa HOM05D003720 ORTHO05D005312 2.4e-33 146.0 140 55.7
MD02G1042600 Malus domestica HOM05D003720 ORTHO05D005312 2.4e-33 146.0 136 55.9
EL10Ac8g19346 Beta vulgaris HOM05D003720 ORTHO05D005312 3.1e-33 145.6 163 50.3
CANSAT56G4488 Cannabis sativa HOM05D003720 ORTHO05D005312 3.1e-33 145.6 134 56.7
ECA234G2971 Erigeron canadensis HOM05D003720 ORTHO05D005312 4.1e-33 145.2 165 49.7
Glyma.17G120500 Glycine max HOM05D003720 ORTHO05D005312 4.1e-33 145.2 145 56.6
Cfa003295 Carpinus fangiana HOM05D003720 ORTHO05D005312 5.3e-33 144.8 125 57.6
Lj4g0009521 Lotus japonicus HOM05D003720 ORTHO05D005312 5.3e-33 144.8 142 56.3
Lalb_Chr13g0302281 Lupinus albus HOM05D003720 ORTHO05D005312 5.3e-33 144.8 143 55.9
Ciclev10007224m.g Citrus clementina HOM05D003720 ORTHO05D005312 6.9e-33 144.4 140 53.6
Hma1.2p1_0245F.1_g101380 Hydrangea macrophylla HOM05D003720 ORTHO05D019489 6.9e-33 144.4 126 56.3
Peaxi162Scf00256g00815 Petunia axillaris HOM05D003720 ORTHO05D005312 6.9e-33 144.4 151 51.7
Manes.16G064500 Manihot esculenta HOM05D003720 ORTHO05D005312 9.1e-33 144.1 138 52.9
Sabra18G0064000 Salix brachista HOM05D003720 ORTHO05D005312 9.1e-33 144.1 125 55.2
Hund12707 Selenicereus undatus HOM05D003720 ORTHO05D005312 9.1e-33 144.1 124 56.5
BcaC02g10846 Brassica carinata HOM05D003720 ORTHO05D005312 1.2e-32 143.7 137 55.5
C04p24570 Brassica napus HOM05D003720 ORTHO05D005312 1.2e-32 143.7 137 55.5
Haze_25676 Corylus avellana HOM05D003720 ORTHO05D005312 1.2e-32 143.7 145 52.4
HanXRQChr10g0317421 Helianthus annuus HOM05D003720 ORTHO05D005312 1.2e-32 143.7 165 50.9
Medtr4g112045 Medicago truncatula HOM05D003720 ORTHO05D005312 1.2e-32 143.7 143 54.5
Oeu002223.1 Olea europaea HOM05D003720 ORTHO05D005312 1.2e-32 143.7 155 51.0
TWI63G0927 Tripterygium wilfordii HOM05D003720 ORTHO05D005312 1.2e-32 143.7 136 55.9
BolC4t23961H Brassica oleracea HOM05D003720 ORTHO05D005312 1.5e-32 143.3 137 55.5
Sc08g0004790 Simmondsia chinensis HOM05D003720 ORTHO05D005312 1.5e-32 143.3 165 47.3
Aqoxy7G01852 Aquilegia oxysepala HOM05D003720 ORTHO05D005312 2.0e-32 142.9 128 58.6
ClCG06G010450 Citrullus lanatus HOM05D003720 ORTHO05D005312 2.0e-32 142.9 140 52.9
MELO3C025310.2 Cucumis melo HOM05D003720 ORTHO05D005312 2.0e-32 142.9 140 52.9
Psat4g042800 Pisum sativum HOM05D003720 ORTHO05D005312 2.0e-32 142.9 144 54.9
Lsat_1_v5_gn_5_99761 Lactuca sativa HOM05D003720 ORTHO05D005312 2.6e-32 142.5 164 50.0
CSS0011692 Camellia sinensis var. sinensis HOM05D003720 ORTHO05D005312 3.4e-32 142.1 160 48.8
SHI03186 Sapria himalayana HOM05D003720 ORTHO05D005312 3.4e-32 142.1 127 55.9
COL.COLO4_34940 Corchorus olitorius HOM05D003720 ORTHO05D005312 4.5e-32 141.7 128 54.7
CsaV3_1G030910 Cucumis sativus L. HOM05D003720 ORTHO05D005312 4.5e-32 141.7 140 52.1
Dinv36598 Davidia involucrata HOM05D003720 ORTHO05D005312 4.5e-32 141.7 162 48.1
TPR.G26776 Trifolium pratense HOM05D003720 ORTHO05D005312 4.5e-32 141.7 144 53.5
Cc06_g09260 Coffea canephora HOM05D003720 ORTHO05D005312 5.9e-32 141.4 171 49.1
PGR102G1985 Punica granatum HOM05D003720 ORTHO05D005312 5.9e-32 141.4 138 52.9
vmacro06189 Vaccinium macrocarpon HOM05D003720 ORTHO05D005312 7.7e-32 141.0 168 48.8
ATR0561G176 Amborella trichopoda HOM05D003720 ORTHO05D005312 1.0e-31 140.6 160 49.4
Rhsim03G0245400 Rhododendron simsii HOM05D003720 ORTHO05D005312 1.0e-31 140.6 164 49.4
Dinv41570 Davidia involucrata HOM05D003720 ORTHO05D005312 2.2e-31 139.4 160 48.8
Mapoly0043s0138 Marchantia polymorpha HOM05D003720 ORTHO05D005312 2.9e-31 139.0 139 52.5
Pp3c13_3460 Physcomitrium patens HOM05D003720 ORTHO05D005312 6.5e-31 137.9 138 52.2
Pp3c4_24650 Physcomitrium patens HOM05D003720 ORTHO05D005312 2.5e-30 136.0 139 51.1
Gorai.009G022700 Gossypium raimondii HOM05D003720 ORTHO05D005312 2.3e-28 129.4 135 52.6
SMO358G0126 Selaginella moellendorffii HOM05D003720 ORTHO05D005312 2.3e-28 129.4 157 47.8
Gohir.A05G021000 Gossypium hirsutum HOM05D003720 ORTHO05D005312 1.1e-27 127.1 132 50.8
Eucgr.C04138 Eucalyptus grandis HOM05D003720 ORTHO05D005312 1.7e-26 123.2 116 53.4
AagrBONN_evm.TU.Sc2ySwM_368.1081 Anthoceros agrestis HOM05D003720 ORTHO05D005312 1.4e-25 120.2 159 44.0
HPP92_014852 Vanilla planifolia HOM05D003720 ORTHO05D005312 5.3e-25 118.2 160 46.2
Actinidia27747 Actinidia chinensis HOM05D003720 ORTHO05D019489 3.4e-24 115.5 151 48.3
Atru.chr7.1286 Acer truncatum HOM05D003720 ORTHO05D005312 1.6e-21 106.7 85 57.6
CBR_g4479 Chara braunii HOM05D003720 ORTHO05D005312 5.7e-19 98.2 191 32.5
AL552U10010 Arabidopsis lyrata HOM05D003720 ORTHO05D019489 3.5e-16 89.0 61 65.6
Cre12.g486209 Chlamydomonas reinhardtii HOM05D003720 ORTHO05D005312 4.0e-12 75.5 100 40.0
PRCOL_00006435 Prasinoderma coloniale HOM05D003720 ORTHO05D005312 4.2e-06 55.5 113 37.2


User provided reference genes

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