Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb024250 Zea mays HOM05D002452 ORTHO05D006766 3.6e-132 474.9 245 100.0
Zm00001eb338160 Zea mays HOM05D002452 ORTHO05D006766 1.1e-77 293.9 178 88.8
Zm00001eb120810 Zea mays HOM05D002452 ORTHO05D006766 2.3e-70 269.6 178 80.3
Zm00001eb137460 Zea mays HOM05D002452 ORTHO05D006766 1.2e-66 257.3 179 76.0
Zm00001eb370750 Zea mays HOM05D002452 ORTHO05D006766 1.2e-63 247.3 172 76.7
Zm00001eb317290 Zea mays HOM05D002452 ORTHO05D006766 1.6e-63 246.9 175 75.4
Zm00001eb409150 Zea mays HOM05D002452 ORTHO05D006766 1.2e-55 220.7 151 78.8
Zm00001eb002150 Zea mays HOM05D002452 ORTHO05D006766 4.5e-50 202.2 119 89.9
Zm00001eb017750 Zea mays HOM05D002452 ORTHO05D006766 8.0e-39 164.9 113 77.0
Zm00001eb038850 Zea mays HOM05D002452 ORTHO05D006766 8.0e-39 164.9 113 77.0
Zm00001eb100520 Zea mays HOM05D002452 ORTHO05D006766 8.0e-39 164.9 113 77.0
Zm00001eb188790 Zea mays HOM05D002452 ORTHO05D006766 8.0e-39 164.9 113 77.0
Zm00001eb319080 Zea mays HOM05D002452 ORTHO05D006766 8.0e-39 164.9 113 77.0
Zm00001eb343810 Zea mays HOM05D002452 ORTHO05D006766 8.0e-39 164.9 113 77.0
Zm00001eb309510 Zea mays HOM05D002452 ORTHO05D006766 2.9e-36 156.4 111 75.7
Os01g0204000 Oryza sativa ssp. japonica HOM05D002452 ORTHO05D006766 2.9e-28 129.8 181 48.1
Haze_09304 Corylus avellana HOM05D002452 ORTHO05D006766 1.6e-18 97.4 130 44.6
Cfa019543 Carpinus fangiana HOM05D002452 ORTHO05D006766 3.5e-18 96.3 128 44.5
QL08p025729 Quercus lobata HOM05D002452 ORTHO05D006766 3.5e-18 96.3 146 41.1
Thecc.07G126400 Theobroma cacao HOM05D002452 ORTHO05D006766 6.0e-18 95.5 161 39.8
Atru.chr10.1169 Acer truncatum HOM05D002452 ORTHO05D006766 1.7e-17 94.0 143 42.0
Prupe.4G160000 Prunus persica HOM05D002452 ORTHO05D006766 1.7e-17 94.0 156 37.2
Atru.chr2.2062 Acer truncatum HOM05D002452 ORTHO05D006766 3.0e-17 93.2 178 38.2
TAR626G0804 Trochodendron aralioides HOM05D002452 ORTHO05D006766 3.9e-17 92.8 218 35.3
Actinidia12591 Actinidia chinensis HOM05D002452 ORTHO05D006766 6.6e-17 92.0 138 42.0
FvH4_3g18120 Fragaria vesca HOM05D002452 ORTHO05D006766 1.1e-16 91.3 130 43.1
FAN16G1664 Fragaria x ananassa HOM05D002452 ORTHO05D006766 1.1e-16 91.3 130 43.1
Rhsim06G0210300 Rhododendron simsii HOM05D002452 ORTHO05D006766 1.5e-16 90.9 122 45.9
Psat0s2485g0160 Pisum sativum HOM05D002452 ORTHO05D006766 3.3e-16 89.7 185 38.9
RcHm_v2.0_Chr5g0030181 Rosa chinensis HOM05D002452 ORTHO05D006766 3.3e-16 89.7 156 38.5
RcHm_v2.0_Chr5g0030351 Rosa chinensis HOM05D002452 ORTHO05D006766 3.3e-16 89.7 227 33.5
RcHm_v2.0_Chr5g0030441 Rosa chinensis HOM05D002452 ORTHO05D006766 3.3e-16 89.7 227 33.5
RcHm_v2.0_Chr5g0030521 Rosa chinensis HOM05D002452 ORTHO05D006766 3.3e-16 89.7 227 33.5
Potri.001G387300 Populus trichocarpa HOM05D002452 ORTHO05D006766 4.3e-16 89.4 152 40.1
TWI39G0752 Tripterygium wilfordii HOM05D002452 ORTHO05D006766 4.3e-16 89.4 210 35.7
FAN11G1668 Fragaria x ananassa HOM05D003130 ORTHO05D003547 5.6e-16 89.0 130 42.3
CiPaw.12G112400 Carya illinoinensis HOM05D002452 ORTHO05D006766 7.3e-16 88.6 145 42.8
Gohir.D01G040900 Gossypium hirsutum HOM05D002452 ORTHO05D006766 7.3e-16 88.6 126 39.7
Nn3g21096 Nelumbo nucifera HOM05D002452 ORTHO05D006766 2.1e-15 87.0 156 42.3
vmacro11955 Vaccinium macrocarpon HOM05D002452 ORTHO05D006766 3.6e-15 86.3 131 45.0
COL.COLO4_17511 Corchorus olitorius HOM05D002452 ORTHO05D006766 4.7e-15 85.9 147 37.4
arahy.Tifrunner.gnm1.ann1.69X35Q Arachis hypogaea HOM05D002452 ORTHO05D006766 6.2e-15 85.5 123 46.3
CSS0001384 Camellia sinensis var. sinensis HOM05D002452 ORTHO05D006766 6.2e-15 85.5 138 39.9
ClCG11G017390 Citrullus lanatus HOM05D002452 ORTHO05D006766 8.1e-15 85.1 147 39.5
Lj8C147T4 Lonicera japonica HOM05D002452 ORTHO05D006766 1.1e-14 84.7 172 36.6
Actinidia07509 Actinidia chinensis HOM05D002452 ORTHO05D006766 1.4e-14 84.3 140 42.1
Medtr2g075820 Medicago truncatula HOM05D002452 ORTHO05D006766 1.8e-14 84.0 156 41.0
Gohir.A01G051100 Gossypium hirsutum HOM05D002452 ORTHO05D006766 2.4e-14 83.6 126 38.9
Aqoxy1G01990 Aquilegia oxysepala HOM05D002452 ORTHO05D006766 3.1e-14 83.2 155 39.4
Duzib213G0380 Durio zibethinus HOM05D002452 ORTHO05D006766 3.1e-14 83.2 216 32.4
Gorai.002G051000 Gossypium raimondii HOM05D002452 ORTHO05D006766 4.0e-14 82.8 126 38.1
SalBow1G0777 Salvia bowleyana HOM05D002452 ORTHO05D006766 4.0e-14 82.8 131 42.7
SalBow8G0660 Salvia bowleyana HOM05D002452 ORTHO05D006766 4.0e-14 82.8 131 42.7
PGR083G1533 Punica granatum HOM05D002452 ORTHO05D006766 5.2e-14 82.4 197 32.5
MD11G1266100 Malus domestica HOM05D002452 ORTHO05D006766 6.9e-14 82.0 145 39.3
TAR627G0084 Trochodendron aralioides HOM05D002452 ORTHO05D006766 6.9e-14 82.0 179 37.4
Lsat_1_v5_gn_7_102200 Lactuca sativa HOM05D002452 ORTHO05D006766 9.0e-14 81.6 131 42.7
Lj3g0025969 Lotus japonicus HOM05D002452 ORTHO05D006766 1.5e-13 80.9 155 42.6
TPR.G16056 Trifolium pratense HOM05D002452 ORTHO05D006766 1.5e-13 80.9 160 40.6
Oeu025328.2 Olea europaea HOM05D002452 ORTHO05D006766 2.0e-13 80.5 157 38.2
Sc03g0010610 Simmondsia chinensis HOM05D002452 ORTHO05D006766 2.0e-13 80.5 167 35.9
HanXRQChr15g0495181 Helianthus annuus HOM05D002452 ORTHO05D006766 2.6e-13 80.1 118 44.9
CsaV3_4G033030 Cucumis sativus L. HOM05D002452 ORTHO05D006766 3.4e-13 79.7 145 38.6
SGA_v2.0_scaffold73G24396 Striga asiatica HOM05D002452 ORTHO05D006766 3.4e-13 79.7 139 38.1
Gohir.A04G043100 Gossypium hirsutum HOM05D002452 ORTHO05D006766 4.4e-13 79.3 201 31.8
Manes.03G099700 Manihot esculenta HOM05D002452 ORTHO05D006766 4.4e-13 79.3 147 40.1
Gohir.D05G340400 Gossypium hirsutum HOM05D002452 ORTHO05D006766 5.8e-13 79.0 184 34.2
Gorai.009G366800 Gossypium raimondii HOM05D002452 ORTHO05D006766 5.8e-13 79.0 184 34.2
Nitab4.5_0000383g0070 Nicotiana tabacum HOM05D002452 ORTHO05D006766 7.6e-13 78.6 191 32.5
Eucgr.F01252 Eucalyptus grandis HOM05D002452 ORTHO05D006766 9.9e-13 78.2 142 38.0
MELO3C025646.2 Cucumis melo HOM05D002452 ORTHO05D006766 1.3e-12 77.8 194 35.1
Migut.M00711 Erythranthe guttata HOM05D002452 ORTHO05D006766 1.3e-12 77.8 115 44.3
Glyma.12G231200 Glycine max HOM05D002452 ORTHO05D006766 1.3e-12 77.8 157 37.6
TAR636G0392 Trochodendron aralioides HOM05D001914 ORTHO05D006766 1.7e-12 77.4 216 33.3
Cc05_g10930 Coffea canephora HOM05D002452 ORTHO05D006766 2.2e-12 77.0 115 43.5
Ca_03951_v3 Cicer arietinum L. HOM05D002452 ORTHO05D006766 6.4e-12 75.5 123 43.1
SEGI_19501 Sequoiadendron giganteum HOM05D002452 ORTHO05D006766 6.4e-12 75.5 126 43.7
GSVIVG01014168001 Vitis vinifera HOM05D002452 ORTHO05D006766 8.4e-12 75.1 135 42.2
SGA_v2.0_scaffold181G39753 Striga asiatica HOM05D002452 ORTHO05D006766 1.4e-11 74.3 134 38.8
CAN.G904.34 Capsicum annuum HOM05D002452 ORTHO05D006766 1.9e-11 73.9 143 36.4
Sed0025986 Sechium edule HOM05D002452 ORTHO05D006766 1.9e-11 73.9 137 33.6
CANSAT35G1635 Cannabis sativa HOM05D002452 ORTHO05D006766 2.4e-11 73.6 150 38.0
Peaxi162Scf00692g00318 Petunia axillaris HOM05D002452 ORTHO05D006766 3.2e-11 73.2 196 31.6
Eucgr.F01259 Eucalyptus grandis HOM05D002452 ORTHO05D006766 5.4e-11 72.4 182 34.6
MSTRG.14972 Avicennia marina HOM05D002452 ORTHO05D006766 9.3e-11 71.6 159 36.5
DCAR_013269 Daucus carota HOM05D002452 ORTHO05D006766 1.2e-10 71.2 116 42.2
arahy.Tifrunner.gnm1.ann1.T9SFGX Arachis hypogaea HOM05D002452 ORTHO05D006766 1.6e-10 70.9 121 42.1
VMungo1080G0044 Vigna mungo HOM05D002452 ORTHO05D006766 1.6e-10 70.9 159 37.7
Phvul.005G080800 Phaseolus vulgaris HOM05D002452 ORTHO05D006766 2.7e-10 70.1 146 37.0
Dinv18382 Davidia involucrata HOM05D002452 ORTHO05D006766 6.0e-10 68.9 119 39.5
PGSC0003DMG400021257 Solanum tuberosum HOM05D002452 ORTHO05D006766 6.0e-10 68.9 225 28.9
AUR62019605 Chenopodium quinoa HOM05D002452 ORTHO05D006766 7.8e-10 68.6 150 36.7
Sopen10g003230 Solanum pennellii HOM05D002452 ORTHO05D006766 7.8e-10 68.6 180 33.3
Cpa.g.sc77.52 Carica papaya HOM05D002452 ORTHO05D006766 1.0e-09 68.2 197 31.5
Solyc10g007400.4 Solanum lycopersicum HOM05D002452 ORTHO05D006766 1.7e-09 67.4 180 32.8
Ciclev10019497m.g Citrus clementina HOM05D002452 ORTHO05D006766 3.9e-09 66.2 107 35.5
Thhalv10018425m.g Eutrema salsugineum HOM05D002452 ORTHO05D006766 8.7e-09 65.1 183 30.1
PSO541G2585 Papaver somniferum HOM05D002452 ORTHO05D006766 8.7e-09 65.1 145 32.4
CDE04G3284 Ceratophyllum demersum HOM05D002452 ORTHO05D006766 1.5e-08 64.3 133 33.8
Lalb_Chr25g0285731 Lupinus albus HOM05D002452 ORTHO05D006766 1.9e-08 63.9 123 41.5
FAN25G3870 Fragaria x ananassa HOM05D003130 ORTHO05D003547 2.5e-08 63.5 61 52.5
Lalb_Chr20g0109181 Lupinus albus HOM05D002452 ORTHO05D006766 2.5e-08 63.5 132 37.1
HPP92_024061 Vanilla planifolia HOM05D002452 ORTHO05D006766 2.5e-08 63.5 135 38.5
PSO675G8136 Papaver somniferum HOM05D002452 ORTHO05D006766 3.3e-08 63.2 188 28.2
Sp5g33730 Schrenkiella parvula HOM05D002452 ORTHO05D006766 5.6e-08 62.4 177 31.6
Aa31LG4G2320 Aethionema arabicum HOM05D002452 ORTHO05D006766 1.6e-07 60.8 160 30.0
THA.LOC104808089 Tarenaya hassleriana HOM05D002452 ORTHO05D006766 1.6e-07 60.8 137 35.0
CARHR072180 Cardamine hirsuta HOM05D002452 ORTHO05D006766 1.1e-06 58.2 144 33.3
AT1G78650 Arabidopsis thaliana HOM05D002452 ORTHO05D006766 2.4e-06 57.0 221 25.3
BcaC08g47423 Brassica carinata HOM05D002452 ORTHO05D006766 2.4e-06 57.0 144 32.6
C06p52530 Brassica napus HOM05D002452 ORTHO05D006585 2.4e-06 57.0 144 32.6
BolC6t40272H Brassica oleracea HOM05D002452 ORTHO05D006585 2.4e-06 57.0 144 32.6
A07p43910 Brassica napus HOM05D002452 ORTHO05D006766 3.1e-06 56.6 138 34.1
BraA07t31897Z Brassica rapa HOM05D002452 ORTHO05D006766 3.1e-06 56.6 138 34.1
AL2G39060 Arabidopsis lyrata HOM05D002452 ORTHO05D006766 5.3e-06 55.8 225 26.2


User provided reference genes

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