Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb022880 Zea mays HOM05D002665 ORTHO05D002991 2.5e-35 152.1 113 100.0
Zm00001eb174670 Zea mays HOM05D002665 ORTHO05D002991 2.8e-31 138.7 107 99.1
Zm00001eb035730 Zea mays HOM05D002665 ORTHO05D002991 3.3e-27 125.2 111 87.4
Os08g0519400 Oryza sativa ssp. japonica HOM05D002665 ORTHO05D002991 1.6e-21 106.3 107 85.0
Os09g0497700 Oryza sativa ssp. japonica HOM05D002665 ORTHO05D002991 6.8e-17 90.9 107 75.7
SGA_v2.0_scaffold27G11647 Striga asiatica HOM05D002665 ORTHO05D002991 4.4e-16 88.2 108 72.2
Cfa013322 Carpinus fangiana HOM05D002665 ORTHO05D002991 2.9e-15 85.5 108 71.3
Haze_21811 Corylus avellana HOM05D002665 ORTHO05D002991 8.3e-15 84.0 110 62.7
Sabra18G0001800 Salix brachista HOM05D002665 ORTHO05D002991 1.4e-14 83.2 108 63.9
Migut.E01410 Erythranthe guttata HOM05D002665 ORTHO05D002991 1.9e-14 82.8 108 62.0
Potri.018G003700 Populus trichocarpa HOM05D002665 ORTHO05D002991 4.1e-14 81.6 108 63.9
TAR383G0456 Trochodendron aralioides HOM05D002665 ORTHO05D002991 5.4e-14 81.3 108 67.6
Cc00_g12740 Coffea canephora HOM05D002665 ORTHO05D002991 1.2e-13 80.1 111 67.6
Oeu059295.1 Olea europaea HOM05D002665 ORTHO05D002991 1.6e-13 79.7 108 64.8
Dinv13248 Davidia involucrata HOM05D002665 ORTHO05D002991 2.7e-13 79.0 109 69.7
Lj8C424T3 Lonicera japonica HOM05D002665 ORTHO05D002991 6.0e-13 77.8 108 66.7
Lj8C430T1 Lonicera japonica HOM05D002665 ORTHO05D002991 6.0e-13 77.8 108 66.7
TWI34G1233 Tripterygium wilfordii HOM05D002665 ORTHO05D002991 1.0e-12 77.0 112 57.1
EL10Ac2g03706 Beta vulgaris HOM05D002665 ORTHO05D002991 1.7e-12 76.3 108 67.6
GSVIVG01035555001 Vitis vinifera HOM05D002665 ORTHO05D002991 1.7e-12 76.3 108 59.3
Oeu026032.1 Olea europaea HOM05D002665 ORTHO05D002991 2.3e-12 75.9 108 63.0
COL.COLO4_18617 Corchorus olitorius HOM05D002665 ORTHO05D002991 3.0e-12 75.5 111 63.1
SGA_v2.0_scaffold193G40649 Striga asiatica HOM05D002665 ORTHO05D002991 3.0e-12 75.5 108 67.6
Thecc.09G004300 Theobroma cacao HOM05D002665 ORTHO05D002991 3.0e-12 75.5 111 64.0
TWI63G0924 Tripterygium wilfordii HOM05D002665 ORTHO05D002991 3.0e-12 75.5 111 60.4
MSTRG.1740 Avicennia marina HOM05D002665 ORTHO05D002991 5.0e-12 74.7 109 58.7
CAN.G940.9 Capsicum annuum HOM05D002665 ORTHO05D002991 5.0e-12 74.7 111 67.6
Ca_15631_v3 Cicer arietinum L. HOM05D002665 ORTHO05D002991 8.6e-12 73.9 108 66.7
Manes.03G002000 Manihot esculenta HOM05D002665 ORTHO05D002991 8.6e-12 73.9 111 64.9
MSTRG.11823 Avicennia marina HOM05D002665 ORTHO05D002991 1.1e-11 73.6 108 65.7
ClCG08G012460 Citrullus lanatus HOM05D002665 ORTHO05D002991 1.1e-11 73.6 108 57.4
Peaxi162Scf00045g01455 Petunia axillaris HOM05D002665 ORTHO05D002991 1.1e-11 73.6 111 66.7
Sabra06G0214600 Salix brachista HOM05D002665 ORTHO05D002991 1.5e-11 73.2 110 61.8
Eucgr.C02115 Eucalyptus grandis HOM05D002665 ORTHO05D002991 1.9e-11 72.8 111 64.0
AUR62020636 Chenopodium quinoa HOM05D002665 ORTHO05D002991 2.5e-11 72.4 108 63.9
AUR62038745 Chenopodium quinoa HOM05D002665 ORTHO05D002991 2.5e-11 72.4 108 63.9
Potri.006G276900 Populus trichocarpa HOM05D002665 ORTHO05D002991 2.5e-11 72.4 108 50.9
VMungo1309G0855 Vigna mungo HOM05D002665 ORTHO05D002991 2.5e-11 72.4 108 66.7
Sopen05g028260 Solanum pennellii HOM05D002420 ORTHO05D002422 1.2e-10 70.1 107 67.3
Nitab4.5_0000860g0180 Nicotiana tabacum HOM05D002665 ORTHO05D002991 1.6e-10 69.7 107 66.4
CAN.G195.4 Capsicum annuum HOM05D002665 ORTHO05D002991 2.1e-10 69.3 111 64.9
Atru.chr7.2676 Acer truncatum HOM05D002665 ORTHO05D002991 2.8e-10 68.9 108 68.5
Oeu002014.1 Olea europaea HOM05D002665 ORTHO05D002991 2.8e-10 68.9 108 59.3
Prupe.1G455000 Prunus persica HOM05D002665 ORTHO05D002991 2.8e-10 68.9 108 65.7
Sopen08g020370 Solanum pennellii HOM05D002665 ORTHO05D002991 2.8e-10 68.9 107 66.4
QL12p026047 Quercus lobata HOM05D002665 ORTHO05D002991 3.6e-10 68.6 108 66.7
Sc09g0007840 Simmondsia chinensis HOM05D002665 ORTHO05D002991 3.6e-10 68.6 108 58.3
ECA240G1424 Erigeron canadensis HOM05D002665 ORTHO05D002991 6.2e-10 67.8 111 62.2
Peaxi162Scf00213g00118 Petunia axillaris HOM05D002665 ORTHO05D002991 8.1e-10 67.4 110 62.7
MELO3C011165.2 Cucumis melo HOM05D002665 ORTHO05D002991 1.1e-09 67.0 108 56.5
Nitab4.5_0006603g0020 Nicotiana tabacum HOM05D002665 ORTHO05D002991 1.1e-09 67.0 108 64.8
Hund03271 Selenicereus undatus HOM05D002665 ORTHO05D002991 1.1e-09 67.0 108 61.1
Sopen08g022940 Solanum pennellii HOM05D002665 ORTHO05D002991 1.4e-09 66.6 111 64.0
Migut.A00460 Erythranthe guttata HOM05D002665 ORTHO05D002991 2.3e-09 65.9 108 63.0
Duzib168G2001 Durio zibethinus HOM05D002665 ORTHO05D002991 3.1e-09 65.5 108 60.2
Gohir.A05G065951 Gossypium hirsutum HOM05D002665 ORTHO05D002991 3.1e-09 65.5 111 63.1
Gohir.D05G068300 Gossypium hirsutum HOM05D002665 ORTHO05D002991 3.1e-09 65.5 111 63.1
Gorai.009G069200 Gossypium raimondii HOM05D002665 ORTHO05D002991 3.1e-09 65.5 111 63.1
Aqoxy7G02750 Aquilegia oxysepala HOM05D002665 ORTHO05D002991 6.8e-09 64.3 103 61.2
Nitab4.5_0000919g0110 Nicotiana tabacum HOM05D002665 ORTHO05D002991 6.8e-09 64.3 108 63.9
Solyc08g074290.3 Solanum lycopersicum HOM05D002665 ORTHO05D002991 6.8e-09 64.3 111 63.1
CiPaw.07G208800 Carya illinoinensis HOM05D002665 ORTHO05D002991 8.9e-09 63.9 108 64.8
CsaV3_2G031150 Cucumis sativus L. HOM05D002665 ORTHO05D002991 1.5e-08 63.2 108 55.6
CSS0011343 Camellia sinensis var. sinensis HOM05D002665 ORTHO05D002991 2.6e-08 62.4 109 61.5
CSS0018914 Camellia sinensis var. sinensis HOM05D002665 ORTHO05D002991 2.6e-08 62.4 109 61.5
CDE06G0091 Ceratophyllum demersum HOM05D002665 ORTHO05D002991 2.6e-08 62.4 108 57.4
Sc06g0001220 Simmondsia chinensis HOM05D002665 ORTHO05D002991 3.4e-08 62.0 107 61.7
Lalb_Chr23g0269331 Lupinus albus HOM05D002665 ORTHO05D002991 4.4e-08 61.6 108 65.7
Glyma.06G080100 Glycine max HOM05D002665 ORTHO05D002991 5.8e-08 61.2 111 64.0
Nn8g40895 Nelumbo nucifera HOM05D002665 ORTHO05D002991 5.8e-08 61.2 111 59.5
Actinidia22249 Actinidia chinensis HOM05D002665 ORTHO05D002991 7.5e-08 60.8 109 64.2
arahy.Tifrunner.gnm1.ann1.D04E55 Arachis hypogaea HOM05D002665 ORTHO05D002991 7.5e-08 60.8 108 63.9
arahy.Tifrunner.gnm1.ann1.DQG69K Arachis hypogaea HOM05D002665 ORTHO05D002991 7.5e-08 60.8 108 63.9
BcaC07g40934 Brassica carinata HOM05D002665 ORTHO05D002991 9.9e-08 60.5 107 47.7
C08p39280 Brassica napus HOM05D002665 ORTHO05D002991 9.9e-08 60.5 107 47.7
BolC8t51501H Brassica oleracea HOM05D002665 ORTHO05D002991 9.9e-08 60.5 107 47.7
Aa31LG7G11370 Aethionema arabicum HOM05D002665 ORTHO05D002991 1.3e-07 60.1 107 56.1
AL4G14850 Arabidopsis lyrata HOM05D002665 ORTHO05D002991 1.3e-07 60.1 107 56.1
AT2G24420 Arabidopsis thaliana HOM05D002665 ORTHO05D002991 1.3e-07 60.1 107 57.0
MD08G1121400 Malus domestica HOM05D002665 ORTHO05D002991 1.3e-07 60.1 111 58.6
CiPaw.08G022000 Carya illinoinensis HOM05D002665 ORTHO05D002991 1.7e-07 59.7 108 62.0
HanXRQChr03g0082951 Helianthus annuus HOM05D002665 ORTHO05D002991 1.7e-07 59.7 111 62.2
HanXRQChr17g0538701 Helianthus annuus HOM05D002665 ORTHO05D002991 2.2e-07 59.3 108 62.0
Nn2g12753 Nelumbo nucifera HOM05D002665 ORTHO05D002991 2.9e-07 58.9 109 45.9
Nitab4.5_0012989g0010 Nicotiana tabacum HOM05D002665 ORTHO05D002991 2.9e-07 58.9 107 64.5
SGA_v2.0_scaffold169G38589 Striga asiatica HOM05D000033 ORTHO05D001317 2.9e-07 58.9 103 54.4
TAR626G1487 Trochodendron aralioides HOM05D002665 ORTHO05D002991 2.9e-07 58.9 108 64.8
TPR.G1355 Trifolium pratense HOM05D002665 ORTHO05D002991 3.7e-07 58.5 108 55.6
Ciclev10008249m.g Citrus clementina HOM05D002665 ORTHO05D002991 4.9e-07 58.2 111 61.3
CANSAT25G0789 Cannabis sativa HOM05D002665 ORTHO05D002991 6.4e-07 57.8 108 61.1
Lj7A750G48 Lonicera japonica HOM05D002665 ORTHO05D002991 6.4e-07 57.8 107 62.6
Solyc05g010750.3 Solanum lycopersicum HOM05D002665 ORTHO05D002991 6.4e-07 57.8 54 50.0
TAR383G0485 Trochodendron aralioides HOM05D002665 ORTHO05D002991 8.3e-07 57.4 109 34.9
unitig_747.g21906 Utricularia gibba HOM05D002665 ORTHO05D002991 1.1e-06 57.0 109 60.6
Lj1g0017245 Lotus japonicus HOM05D002665 ORTHO05D002991 1.4e-06 56.6 108 63.9
MD15G1100300 Malus domestica HOM05D002665 ORTHO05D002991 1.9e-06 56.2 111 33.3
PGSC0003DMG400014854 Solanum tuberosum HOM05D002665 ORTHO05D002991 1.9e-06 56.2 111 61.3
Ah.11g044010 Amaranthus hybridus HOM05D002665 ORTHO05D002991 2.4e-06 55.8 108 60.2
BraA03t15106Z Brassica rapa HOM05D002665 ORTHO05D002991 3.2e-06 55.5 107 58.9
HanXRQChr13g0411771 Helianthus annuus HOM05D002665 ORTHO05D002991 3.2e-06 55.5 111 60.4
CsaV3_3G047330 Cucumis sativus L. HOM05D002665 ORTHO05D002991 4.1e-06 55.1 112 57.1
AT4G31340 Arabidopsis thaliana HOM05D002665 ORTHO05D002991 5.4e-06 54.7 107 60.7
ECA246G1443 Erigeron canadensis HOM05D002665 ORTHO05D002991 5.4e-06 54.7 110 54.5
Lalb_Chr11g0064281 Lupinus albus HOM05D002665 ORTHO05D002991 5.4e-06 54.7 108 63.9
Carub.0007s0922 Capsella rubella HOM05D002665 ORTHO05D002991 9.2e-06 53.9 107 58.9


User provided reference genes

Program Settings