Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb022720 Zea mays HOM05D006682 ORTHO05D008627 2.0e-136 489.2 260 100.0
Zm00001eb394030 Zea mays HOM05D006682 ORTHO05D008627 1.9e-123 446.0 260 92.3
Os10g0545800 Oryza sativa ssp. japonica HOM05D006682 ORTHO05D008627 6.4e-87 324.7 270 69.6
Gohir.A01G228400 Gossypium hirsutum HOM05D006682 ORTHO05D008627 2.5e-67 259.6 241 59.8
RcHm_v2.0_Chr5g0077121 Rosa chinensis HOM05D006682 ORTHO05D008627 5.7e-67 258.5 249 58.6
Sc16g0009700 Simmondsia chinensis HOM05D006682 ORTHO05D008627 5.7e-67 258.5 203 66.0
Prupe.6G023600 Prunus persica HOM05D006682 ORTHO05D008627 7.4e-67 258.1 239 61.5
FAN25G2895 Fragaria x ananassa HOM05D006682 ORTHO05D008627 9.7e-67 257.7 268 57.5
Gohir.D01G218300 Gossypium hirsutum HOM05D006682 ORTHO05D008627 1.3e-66 257.3 241 59.3
Gorai.002G265000 Gossypium raimondii HOM05D006682 ORTHO05D008627 1.3e-66 257.3 241 59.3
MD03G1024200 Malus domestica HOM05D006682 ORTHO05D008627 1.7e-66 256.9 249 58.6
FAN21G3201 Fragaria x ananassa HOM05D006682 ORTHO05D008627 2.2e-66 256.5 268 57.1
Manes.06G166600 Manihot esculenta HOM05D006682 ORTHO05D008627 6.3e-66 255.0 234 59.0
CANSAT80G0450 Cannabis sativa HOM05D006682 ORTHO05D008627 1.4e-65 253.8 206 64.1
MBI13_g31544_MAGBIO Magnolia biondii HOM05D006682 ORTHO05D008627 1.4e-65 253.8 255 56.5
PGR102G2323 Punica granatum HOM05D006682 ORTHO05D008627 1.8e-65 253.4 261 57.5
Glyma.11G132200 Glycine max HOM05D006682 ORTHO05D008627 2.4e-65 253.1 230 61.7
MD11G1029300 Malus domestica HOM05D006682 ORTHO05D008627 3.1e-65 252.7 262 57.6
Rhsim13G0223700 Rhododendron simsii HOM05D006682 ORTHO05D008627 3.1e-65 252.7 203 65.0
FAN11G1823 Fragaria x ananassa HOM05D006682 ORTHO05D008627 4.1e-65 252.3 270 55.9
HPP92_017841 Vanilla planifolia HOM05D006682 ORTHO05D008627 4.1e-65 252.3 244 57.8
FvH4_3g43060 Fragaria vesca HOM05D006682 ORTHO05D008627 5.3e-65 251.9 259 57.1
CDE04G1557 Ceratophyllum demersum HOM05D006682 ORTHO05D008627 6.9e-65 251.5 184 65.2
Glyma.12G056800 Glycine max HOM05D006682 ORTHO05D008627 6.9e-65 251.5 246 57.7
QL01p005270 Quercus lobata HOM05D006682 ORTHO05D008627 9.1e-65 251.1 230 58.7
FAN16G2773 Fragaria x ananassa HOM05D006682 ORTHO05D008627 1.2e-64 250.8 270 55.9
Dinv36276 Davidia involucrata HOM05D006682 ORTHO05D008627 1.5e-64 250.4 230 60.4
Nn3g18894 Nelumbo nucifera HOM05D006682 ORTHO05D008627 2.0e-64 250.0 185 66.5
Haze_23101 Corylus avellana HOM05D006682 ORTHO05D008627 2.6e-64 249.6 231 59.3
AT3G51790 Arabidopsis thaliana HOM05D006682 ORTHO05D008627 4.5e-64 248.8 211 62.6
arahy.Tifrunner.gnm1.ann1.1N3H6Z Arachis hypogaea HOM05D006682 ORTHO05D008627 5.9e-64 248.4 269 55.4
Lj1A355T5 Lonicera japonica HOM05D006682 ORTHO05D008627 5.9e-64 248.4 234 59.0
COL.COLO4_14494 Corchorus olitorius HOM05D006682 ORTHO05D008627 7.7e-64 248.1 240 58.3
Cfa009742 Carpinus fangiana HOM05D006682 ORTHO05D008627 1.0e-63 247.7 235 58.3
Ah.13g066750 Amaranthus hybridus HOM05D006682 ORTHO05D008627 1.3e-63 247.3 233 59.2
Duzib128G1702 Durio zibethinus HOM05D006682 ORTHO05D008627 1.3e-63 247.3 251 56.6
THA.LOC104807019 Tarenaya hassleriana HOM05D006682 ORTHO05D008627 1.3e-63 247.3 201 64.7
Aa31sc655G20 Aethionema arabicum HOM05D006682 ORTHO05D008627 1.7e-63 246.9 202 63.4
Aqoxy2G00055 Aquilegia oxysepala HOM05D006682 ORTHO05D008627 2.2e-63 246.5 243 58.0
CARHR161420 Cardamine hirsuta HOM05D006682 ORTHO05D008627 2.2e-63 246.5 245 58.0
BcaB01g00416 Brassica carinata HOM05D006682 ORTHO05D008627 2.9e-63 246.1 194 64.4
Phvul.011G058400 Phaseolus vulgaris HOM05D006682 ORTHO05D008627 3.8e-63 245.7 209 60.8
EL10Ac3g05849 Beta vulgaris HOM05D006682 ORTHO05D008627 5.0e-63 245.4 239 57.3
Lalb_Chr08g0245621 Lupinus albus HOM05D006682 ORTHO05D008627 5.0e-63 245.4 242 57.9
AL5G32250 Arabidopsis lyrata HOM05D006682 ORTHO05D008627 6.5e-63 245.0 245 57.6
Potri.003G205200 Populus trichocarpa HOM05D006682 ORTHO05D008627 6.5e-63 245.0 192 65.6
CDE03G0115 Ceratophyllum demersum HOM05D006682 ORTHO05D008627 8.5e-63 244.6 196 61.7
Sabra03G0151700 Salix brachista HOM05D006682 ORTHO05D008627 8.5e-63 244.6 248 57.7
Thecc.05G010600 Theobroma cacao HOM05D006682 ORTHO05D008627 8.5e-63 244.6 224 58.9
Cpa.g.sc21.74 Carica papaya HOM05D006682 ORTHO05D008627 1.1e-62 244.2 228 58.3
CiPaw.13G163300 Carya illinoinensis HOM05D006682 ORTHO05D008627 1.1e-62 244.2 238 55.9
arahy.Tifrunner.gnm1.ann1.11YZMF Arachis hypogaea HOM05D006682 ORTHO05D008627 1.4e-62 243.8 269 54.6
Cpa.g.sc12.111 Carica papaya HOM05D006682 ORTHO05D008627 1.4e-62 243.8 205 62.4
MELO3C015204.2 Cucumis melo HOM05D006682 ORTHO05D008627 1.9e-62 243.4 230 58.7
ECA233G5908 Erigeron canadensis HOM05D006682 ORTHO05D008627 5.5e-62 241.9 235 57.4
TWI38G0692 Tripterygium wilfordii HOM05D006682 ORTHO05D008627 5.5e-62 241.9 205 62.9
Ciclev10012386m.g Citrus clementina HOM05D006682 ORTHO05D008627 7.2e-62 241.5 259 53.3
Hma1.2p1_0401F.1_g144700 Hydrangea macrophylla HOM05D006682 ORTHO05D008627 7.2e-62 241.5 194 64.9
Sp5g10480 Schrenkiella parvula HOM05D006682 ORTHO05D008627 7.2e-62 241.5 232 58.6
BcaB01g00476 Brassica carinata HOM05D006682 ORTHO05D008627 9.4e-62 241.1 203 62.1
C08p27040 Brassica napus HOM05D006682 ORTHO05D008627 9.4e-62 241.1 203 62.1
BolC8t50319H Brassica oleracea HOM05D006682 ORTHO05D008627 9.4e-62 241.1 203 62.1
TAR623G0396 Trochodendron aralioides HOM05D006682 ORTHO05D008627 9.4e-62 241.1 200 61.5
TAR623G0191 Trochodendron aralioides HOM05D006682 ORTHO05D008627 1.2e-61 240.7 194 63.4
Actinidia16314 Actinidia chinensis HOM05D006682 ORTHO05D008627 2.1e-61 240.0 240 56.7
ClCG03G013350 Citrullus lanatus HOM05D006682 ORTHO05D008627 2.7e-61 239.6 240 55.4
Eucgr.B03679 Eucalyptus grandis HOM05D006682 ORTHO05D008627 2.7e-61 239.6 259 53.3
VMungo1127G1130 Vigna mungo HOM05D006682 ORTHO05D008627 2.7e-61 239.6 248 56.9
CsaV3_1G042700 Cucumis sativus L. HOM05D006682 ORTHO05D008627 4.6e-61 238.8 230 57.8
Lj3g0017048 Lotus japonicus HOM05D006682 ORTHO05D008627 4.6e-61 238.8 194 63.9
Psat7g213040 Pisum sativum HOM05D006682 ORTHO05D008627 4.6e-61 238.8 254 55.9
Thhalv10010653m.g Eutrema salsugineum HOM05D006682 ORTHO05D008627 7.9e-61 238.0 248 55.2
Sed0028089 Sechium edule HOM05D006682 ORTHO05D008627 7.9e-61 238.0 191 63.9
MSTRG.18416 Avicennia marina HOM05D006682 ORTHO05D008627 1.4e-60 237.3 224 59.4
Lsat_1_v5_gn_8_74980 Lactuca sativa HOM05D006682 ORTHO05D008627 1.8e-60 236.9 250 54.4
Medtr4g065610 Medicago truncatula HOM05D006682 ORTHO05D008627 1.8e-60 236.9 248 54.4
A09p44960 Brassica napus HOM05D006682 ORTHO05D008627 2.3e-60 236.5 255 54.9
BraA09t39955Z Brassica rapa HOM05D006682 ORTHO05D008627 2.3e-60 236.5 255 54.9
CSS0008647 Camellia sinensis var. sinensis HOM05D006682 ORTHO05D008627 3.0e-60 236.1 217 59.9
Ca_20573_v3 Cicer arietinum L. HOM05D006682 ORTHO05D008627 6.7e-60 235.0 239 56.9
Ca_30508_v3 Cicer arietinum L. HOM05D006682 ORTHO05D008627 6.7e-60 235.0 239 56.9
Cc00_g20370 Coffea canephora HOM05D006682 ORTHO05D008627 1.5e-59 233.8 214 59.8
ATR0605G320 Amborella trichopoda HOM05D006682 ORTHO05D008627 2.6e-59 233.0 254 56.7
PSO339G5979 Papaver somniferum HOM05D006682 ORTHO05D008627 2.6e-59 233.0 210 59.5
SHI11277 Sapria himalayana HOM05D006682 ORTHO05D008627 3.3e-59 232.6 207 60.4
Migut.O00578 Erythranthe guttata HOM05D006682 ORTHO05D008627 4.4e-59 232.3 203 61.1
PSO384G2735 Papaver somniferum HOM05D006682 ORTHO05D008627 5.7e-59 231.9 235 55.7
SalBow8G0417 Salvia bowleyana HOM05D006682 ORTHO05D008627 1.3e-58 230.7 247 55.1
CAN.G350.11 Capsicum annuum HOM05D006682 ORTHO05D008627 1.7e-58 230.3 253 53.0
Nitab4.5_0002026g0020 Nicotiana tabacum HOM05D006682 ORTHO05D008627 2.8e-58 229.6 222 56.8
SalBow5G1085 Salvia bowleyana HOM05D006682 ORTHO05D008627 8.2e-58 228.0 263 52.5
Sopen09g001750 Solanum pennellii HOM05D006682 ORTHO05D008627 8.2e-58 228.0 229 54.6
Manes.14G001136 Manihot esculenta HOM05D006682 ORTHO05D008627 2.4e-57 226.5 173 65.9
Solyc09g005870.1 Solanum lycopersicum HOM05D006682 ORTHO05D008627 2.4e-57 226.5 229 54.1
PGSC0003DMG400023913 Solanum tuberosum HOM05D006682 ORTHO05D008627 2.4e-57 226.5 247 52.6
DCAR_014742 Daucus carota HOM05D006682 ORTHO05D008627 5.3e-57 225.3 179 63.7
Solyc03g033990.1 Solanum lycopersicum HOM05D006682 ORTHO05D008627 2.6e-56 223.0 252 52.0
Sopen03g006750 Solanum pennellii HOM05D006682 ORTHO05D008627 2.6e-56 223.0 252 52.0
SGA_v2.0_scaffold42G16114 Striga asiatica HOM05D006682 ORTHO05D008627 3.4e-56 222.6 222 55.9
PGSC0003DMG400009816 Solanum tuberosum HOM05D006682 ORTHO05D008627 1.7e-55 220.3 249 51.4
SEGI_12993 Sequoiadendron giganteum HOM05D006682 ORTHO05D008627 8.5e-55 218.0 175 62.9
TPR.G35025 Trifolium pratense HOM05D006682 ORTHO05D008627 2.1e-53 213.4 245 53.1
SGA_v2.0_scaffold4G02325 Striga asiatica HOM05D006682 ORTHO05D008627 2.7e-53 213.0 210 57.1
AUR62015492 Chenopodium quinoa HOM05D006682 ORTHO05D008627 2.0e-51 206.8 218 55.5
Lj3P268T21 Lonicera japonica HOM05D006682 ORTHO05D008627 3.3e-51 206.1 165 63.0
Pp3c14_20080 Physcomitrium patens HOM05D006682 ORTHO05D008627 1.7e-50 203.8 187 56.1
Psat7g244600 Pisum sativum HOM05D006682 ORTHO05D008627 2.6e-48 196.4 198 56.6
Mapoly0003s0021 Marchantia polymorpha HOM05D006682 ORTHO05D008627 3.5e-48 196.1 201 51.2
AUR62002207 Chenopodium quinoa HOM05D006072 ORTHO05D007363 5.5e-46 188.7 146 63.7
unitig_26.g10134 Utricularia gibba HOM05D006682 ORTHO05D008627 3.7e-42 176.0 263 43.0
HanXRQChr17g0534121 Helianthus annuus HOM05D006682 ORTHO05D008627 1.0e-36 157.9 160 55.0
Nitab4.5_0000492g0110 Nicotiana tabacum HOM05D006682 ORTHO05D008627 2.0e-24 117.1 116 53.4
GSVIVG01025303001 Vitis vinifera HOM05D006682 ORTHO05D008627 2.3e-23 113.6 94 62.8
Carub.0005s1814 Capsella rubella HOM05D006682 ORTHO05D008627 6.0e-16 89.0 109 50.5
EL10Ac6g14324 Beta vulgaris HOM05D006682 ORTHO05D007363 2.3e-15 87.0 71 59.2
CBR_g49935 Chara braunii HOM05D000019 ORTHO05D000048 2.3e-15 87.0 105 47.6
CBR_g49937 Chara braunii HOM05D000019 ORTHO05D000002 1.2e-13 81.3 110 45.5
MBI13_g31542_MAGBIO Magnolia biondii HOM05D006682 ORTHO05D008627 2.1e-13 80.5 72 55.6
Aqoxy4G00577 Aquilegia oxysepala HOM05D006682 ORTHO05D008627 3.0e-07 60.1 48 60.4
Peaxi162Scf00029g00296 Petunia axillaris HOM05D006682 ORTHO05D008627 4.3e-06 56.2 59 54.2


User provided reference genes

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