Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb021170 Zea mays HOM05D005945 ORTHO05D006749 0.0e+00 1663.7 848 100.0
Zm00001eb404680 Zea mays HOM05D005945 ORTHO05D006749 0.0e+00 1325.1 853 82.5
Zm00001eb442610 Zea mays HOM05D005945 ORTHO05D006749 4.6e-259 898.3 605 79.0
Zm00001eb051100 Zea mays HOM05D005945 ORTHO05D006749 1.2e-235 820.5 569 77.3
Zm00001eb343560 Zea mays HOM05D005945 ORTHO05D006749 3.4e-230 802.4 678 67.3
Os03g0594700 Oryza sativa ssp. japonica HOM05D005945 ORTHO05D006749 2.4e-183 646.7 894 47.2
GSVIVG01009690001 Vitis vinifera HOM05D005945 ORTHO05D006749 9.6e-39 166.4 262 40.5
TAR376G0838 Trochodendron aralioides HOM05D005945 ORTHO05D006749 8.1e-38 163.3 281 40.9
TAR628G0886 Trochodendron aralioides HOM05D005945 ORTHO05D006749 9.0e-37 159.8 300 38.7
CSS0001698 Camellia sinensis var. sinensis HOM05D005945 ORTHO05D006749 7.6e-36 156.8 255 40.0
PSO675G9049 Papaver somniferum HOM05D005945 ORTHO05D006749 1.7e-35 155.6 259 39.4
CSS0038834 Camellia sinensis var. sinensis HOM05D005945 ORTHO05D006749 3.8e-35 154.5 255 39.6
PSO541G4169 Papaver somniferum HOM05D005945 ORTHO05D006749 6.4e-35 153.7 260 38.8
Thecc.08G024700 Theobroma cacao HOM05D005945 ORTHO05D006749 1.1e-34 152.9 268 41.0
Dinv39407 Davidia involucrata HOM05D005945 ORTHO05D006749 1.4e-34 152.5 391 33.0
MBI16_g17464_MAGBIO Magnolia biondii HOM05D005945 ORTHO05D006749 2.7e-33 148.3 256 37.9
Oeu056183.1 Olea europaea HOM05D005945 ORTHO05D006749 2.7e-33 148.3 257 38.9
Actinidia15315 Actinidia chinensis HOM05D005945 ORTHO05D006749 6.0e-33 147.1 257 36.6
COL.COLO4_26338 Corchorus olitorius HOM05D005945 ORTHO05D006749 7.8e-33 146.7 296 36.8
Nitab4.5_0000110g0520 Nicotiana tabacum HOM05D005945 ORTHO05D006749 3.0e-32 144.8 530 28.9
Nn5g29549 Nelumbo nucifera HOM05D005945 ORTHO05D006749 5.1e-32 144.1 305 35.7
Cc10_g03040 Coffea canephora HOM05D005945 ORTHO05D006749 6.6e-32 143.7 269 39.4
Cpa.g.sc64.76 Carica papaya HOM05D005945 ORTHO05D006749 1.1e-31 142.9 257 36.6
MSTRG.25161 Avicennia marina HOM05D005945 ORTHO05D006749 1.5e-31 142.5 258 37.2
Gohir.D06G008100 Gossypium hirsutum HOM05D005945 ORTHO05D006749 1.9e-31 142.1 298 37.2
Gorai.010G010800 Gossypium raimondii HOM05D005945 ORTHO05D006749 1.9e-31 142.1 298 37.2
Duzib093G2051 Durio zibethinus HOM05D005945 ORTHO05D006749 4.3e-31 141.0 301 37.2
Sopen04g033790 Solanum pennellii HOM05D005945 ORTHO05D006749 4.3e-31 141.0 422 32.2
Solyc04g080200.4 Solanum lycopersicum HOM05D005945 ORTHO05D006749 7.3e-31 140.2 409 31.1
Dinv36067 Davidia involucrata HOM05D005945 ORTHO05D006749 3.6e-30 137.9 220 40.9
TPR.G32532 Trifolium pratense HOM05D005945 ORTHO05D006749 3.6e-30 137.9 258 33.3
Migut.C00710 Erythranthe guttata HOM05D005945 ORTHO05D006749 4.8e-30 137.5 427 28.3
PGSC0003DMG400005162 Solanum tuberosum HOM05D005945 ORTHO05D006749 6.2e-30 137.1 406 31.5
Oeu036192.1 Olea europaea HOM05D005945 ORTHO05D006749 8.1e-30 136.7 336 32.7
CsaV3_2G028570 Cucumis sativus L. HOM05D005945 ORTHO05D006749 1.4e-29 136.0 365 32.9
Nitab4.5_0003783g0040 Nicotiana tabacum HOM05D005945 ORTHO05D006749 1.4e-29 136.0 334 33.2
Psat7g242000 Pisum sativum HOM05D005945 ORTHO05D006749 1.4e-29 136.0 530 26.4
Prupe.1G381200 Prunus persica HOM05D005945 ORTHO05D006749 1.4e-29 136.0 432 29.4
Gohir.A06G010700 Gossypium hirsutum HOM05D005945 ORTHO05D006749 1.8e-29 135.6 311 35.4
Lsat_1_v5_gn_1_17620 Lactuca sativa HOM05D005945 ORTHO05D006749 5.3e-29 134.0 413 30.8
Ca_03064_v3 Cicer arietinum L. HOM05D005945 ORTHO05D006749 6.9e-29 133.7 393 30.0
FAN20G0334 Fragaria x ananassa HOM05D005945 ORTHO05D006749 9.0e-29 133.3 318 31.4
Potri.014G181200 Populus trichocarpa HOM05D005945 ORTHO05D006749 9.0e-29 133.3 292 35.3
TAR628G0416 Trochodendron aralioides HOM05D005945 ORTHO05D006749 1.5e-28 132.5 169 47.9
Aqoxy6G01057 Aquilegia oxysepala HOM05D005945 ORTHO05D006749 2.0e-28 132.1 236 38.1
MELO3C010931.2 Cucumis melo HOM05D005945 ORTHO05D006749 3.4e-28 131.3 365 32.1
arahy.Tifrunner.gnm1.ann1.Q0ZVI3 Arachis hypogaea HOM05D005945 ORTHO05D006749 4.5e-28 131.0 256 34.4
SGA_v2.0_scaffold326G48709 Striga asiatica HOM05D005945 ORTHO05D006749 7.6e-28 130.2 449 27.8
Peaxi162Scf00690g00118 Petunia axillaris HOM05D005945 ORTHO05D006749 1.3e-27 129.4 141 49.6
FAN15G0837 Fragaria x ananassa HOM05D005945 ORTHO05D006749 1.7e-27 129.0 318 30.8
Phvul.010G012000 Phaseolus vulgaris HOM05D005945 ORTHO05D006749 1.7e-27 129.0 276 35.5
HPP92_021270 Vanilla planifolia HOM05D005945 ORTHO05D006749 1.7e-27 129.0 234 37.6
DCAR_008766 Daucus carota HOM05D005945 ORTHO05D006749 2.2e-27 128.6 301 33.2
FvH4_2g39990 Fragaria vesca HOM05D005945 ORTHO05D006749 2.2e-27 128.6 377 29.4
Sc15g0006890 Simmondsia chinensis HOM05D005945 ORTHO05D006749 2.2e-27 128.6 260 36.2
RcHm_v2.0_Chr6g0300761 Rosa chinensis HOM05D005945 ORTHO05D006749 2.9e-27 128.3 261 34.1
TWI12G1232 Tripterygium wilfordii HOM05D005945 ORTHO05D006749 2.9e-27 128.3 249 35.3
ATR0618G067 Amborella trichopoda HOM05D005945 ORTHO05D006749 4.9e-27 127.5 239 34.3
Medtr4g019490 Medicago truncatula HOM05D005945 ORTHO05D006749 8.4e-27 126.7 265 34.3
FAN27G1966 Fragaria x ananassa HOM05D005945 ORTHO05D006749 1.1e-26 126.3 386 28.8
Lj4A42T73 Lonicera japonica HOM05D005945 ORTHO05D006749 1.1e-26 126.3 182 41.2
Hund26580 Selenicereus undatus HOM05D005945 ORTHO05D006749 1.4e-26 125.9 250 34.8
MD08G1033800 Malus domestica HOM05D005945 ORTHO05D006749 4.2e-26 124.4 421 28.5
THA.LOC104803244 Tarenaya hassleriana HOM05D005945 ORTHO05D006749 4.2e-26 124.4 342 31.3
Manes.18G028200 Manihot esculenta HOM05D005945 ORTHO05D006749 1.2e-25 122.9 296 30.4
VMungo0331G0095 Vigna mungo HOM05D005945 ORTHO05D006749 1.2e-25 122.9 253 34.8
BcaC07g40112 Brassica carinata HOM05D005945 ORTHO05D006749 2.1e-25 122.1 367 30.8
ClCG08G015230 Citrullus lanatus HOM05D005945 ORTHO05D006749 2.7e-25 121.7 316 32.6
Manes.05G161400 Manihot esculenta HOM05D005945 ORTHO05D006749 3.5e-25 121.3 360 31.1
CANSAT25G3494 Cannabis sativa HOM05D005945 ORTHO05D006749 4.6e-25 120.9 250 34.4
Glyma.03G071500 Glycine max HOM05D005945 ORTHO05D006749 1.0e-24 119.8 252 33.7
Lj3g0003314 Lotus japonicus HOM05D005945 ORTHO05D006749 1.3e-24 119.4 258 31.8
Lalb_Chr03g0042671 Lupinus albus HOM05D005945 ORTHO05D006749 1.3e-24 119.4 292 31.5
SEGI_34412 Sequoiadendron giganteum HOM05D057448 ORTHO05D006749 1.3e-24 119.4 164 42.1
AT3G56870 Arabidopsis thaliana HOM05D005945 ORTHO05D006749 1.8e-24 119.0 352 27.8
PGR031G1506 Punica granatum HOM05D005945 ORTHO05D006749 5.1e-24 117.5 237 34.2
A09p49740 Brassica napus HOM05D005945 ORTHO05D006749 8.7e-24 116.7 360 28.1
BraA09t40427Z Brassica rapa HOM05D005945 ORTHO05D006749 8.7e-24 116.7 360 28.1
Glyma.01G104600 Glycine max HOM05D005945 ORTHO05D006749 8.7e-24 116.7 250 33.2
HanXRQChr04g0105591 Helianthus annuus HOM05D005945 ORTHO05D006749 8.7e-24 116.7 262 33.2
Sabra14G0141200 Salix brachista HOM05D005945 ORTHO05D006749 1.1e-23 116.3 435 29.7
Gohir.D02G094500 Gossypium hirsutum HOM05D005945 ORTHO05D006749 1.5e-23 115.9 231 32.5
arahy.Tifrunner.gnm1.ann1.01TKSZ Arachis hypogaea HOM05D005945 ORTHO05D006749 2.5e-23 115.2 289 32.2
Aqoxy4G01586 Aquilegia oxysepala HOM05D005945 ORTHO05D006749 4.3e-23 114.4 298 32.6
Eucgr.F01555 Eucalyptus grandis HOM05D005945 ORTHO05D006749 4.3e-23 114.4 249 32.9
Gorai.005G107400 Gossypium raimondii HOM05D005945 ORTHO05D006749 4.3e-23 114.4 233 32.2
Atru.chr13.502 Acer truncatum HOM05D005945 ORTHO05D006749 5.6e-23 114.0 162 42.0
Sp5g05720 Schrenkiella parvula HOM05D005945 ORTHO05D006749 7.4e-23 113.6 325 28.6
AL5G38260 Arabidopsis lyrata HOM05D005945 ORTHO05D006749 1.3e-22 112.8 315 27.9
QL02p007988 Quercus lobata HOM05D005945 ORTHO05D006749 1.6e-22 112.5 873 23.8
HanXRQChr04g0105581 Helianthus annuus HOM05D005945 ORTHO05D006749 2.1e-22 112.1 281 31.3
Sed0009733 Sechium edule HOM05D005945 ORTHO05D006749 2.1e-22 112.1 269 32.3
BcaC07g39998 Brassica carinata HOM05D005945 ORTHO05D006749 8.1e-22 110.2 339 26.8
C08p32110 Brassica napus HOM05D005945 ORTHO05D006749 8.1e-22 110.2 339 26.8
BolC8t50829H Brassica oleracea HOM05D005945 ORTHO05D006749 1.1e-21 109.8 339 26.8
Sed0010063 Sechium edule HOM05D005945 ORTHO05D006749 2.4e-21 108.6 294 28.9
Lalb_Chr19g0125071 Lupinus albus HOM05D005945 ORTHO05D006749 4.0e-21 107.8 156 38.5
Cfa018140 Carpinus fangiana HOM05D005945 ORTHO05D006749 5.3e-21 107.5 320 28.1
Carub.0005s2360 Capsella rubella HOM05D005945 ORTHO05D006749 6.9e-21 107.1 257 28.8
Thhalv10005811m.g Eutrema salsugineum HOM05D005945 ORTHO05D006749 1.2e-20 106.3 356 26.7
Haze_17984 Corylus avellana HOM05D005945 ORTHO05D006749 1.5e-20 105.9 275 31.3
EL10Ac1g01817 Beta vulgaris HOM05D005945 ORTHO05D006749 5.8e-20 104.0 374 26.5
Ah.11g043130 Amaranthus hybridus HOM05D005945 ORTHO05D006749 6.4e-19 100.5 272 27.2
ECA247G0868 Erigeron canadensis HOM05D005945 ORTHO05D006749 6.4e-19 100.5 892 23.0
Aa31LG10G11720 Aethionema arabicum HOM05D005945 ORTHO05D006749 1.1e-18 99.8 336 27.4
Lj2g0002553 Lotus japonicus HOM05D005945 ORTHO05D006749 1.9e-18 99.0 313 28.1
AUR62043686 Chenopodium quinoa HOM05D005945 ORTHO05D006749 2.4e-18 98.6 285 27.4
CARHR167020 Cardamine hirsuta HOM05D005945 ORTHO05D006749 9.3e-18 96.7 256 30.9
Actinidia22556 Actinidia chinensis HOM05D005945 ORTHO05D006749 1.8e-16 92.4 106 43.4
AUR62038825 Chenopodium quinoa HOM05D005945 ORTHO05D006749 2.3e-16 92.0 228 28.1
Aqoxy4G01559 Aquilegia oxysepala HOM05D005945 ORTHO05D006749 8.7e-16 90.1 259 30.5
Rhsim06G0034700 Rhododendron simsii HOM05D005945 ORTHO05D006749 1.1e-15 89.7 608 25.2
CiPaw.15G076000 Carya illinoinensis HOM05D005945 ORTHO05D006749 1.5e-15 89.4 281 30.2
MD15G1030400 Malus domestica HOM05D005945 ORTHO05D006749 5.3e-13 80.9 200 31.5
AagrBONN_evm.TU.Sc2ySwM_344.3266 Anthoceros agrestis HOM05D005945 ORTHO05D006749 2.0e-12 79.0 158 31.0
vmacro21631 Vaccinium macrocarpon HOM05D005945 ORTHO05D006749 2.2e-11 75.5 86 40.7
Ah.05g167400 Amaranthus hybridus HOM05D005945 ORTHO05D006749 6.5e-11 73.9 230 29.1
HPP92_021280 Vanilla planifolia HOM05D050438 ORTHO05D006749 1.4e-10 72.8 307 27.4
CDE04G3738 Ceratophyllum demersum HOM05D060868 ORTHO05D006749 4.6e-09 67.8 124 33.1
Lalb_Chr13g0294671 Lupinus albus HOM05D007138 ORTHO05D009148 4.6e-09 67.8 210 27.1
Mapoly0005s0138 Marchantia polymorpha HOM05D036654 ORTHO05D006749 7.9e-09 67.0 185 29.2
SEGI_18222 Sequoiadendron giganteum HOM05D007138 ORTHO05D009148 7.9e-09 67.0 181 29.8
CDE02G0146 Ceratophyllum demersum HOM05D060868 ORTHO05D006749 1.8e-08 65.9 286 27.3
Ciclev10004866m.g Citrus clementina HOM05D007138 ORTHO05D009148 5.1e-08 64.3 245 26.1
TAR381G0602 Trochodendron aralioides HOM05D005945 ORTHO05D006749 8.7e-08 63.5 122 37.7
arahy.Tifrunner.gnm1.ann1.JT7ZMS Arachis hypogaea HOM05D007138 ORTHO05D009148 1.1e-07 63.2 152 30.9
arahy.Tifrunner.gnm1.ann1.KQUG48 Arachis hypogaea HOM05D007138 ORTHO05D009148 2.5e-07 62.0 128 34.4
MSTRG.9782 Avicennia marina HOM05D007138 ORTHO05D009148 2.5e-07 62.0 121 28.1
TWI53G1035 Tripterygium wilfordii HOM05D007138 ORTHO05D009148 2.5e-07 62.0 115 32.2
FAN12G4162 Fragaria x ananassa HOM05D007138 ORTHO05D009148 4.3e-07 61.2 159 26.4
TPR.G11960 Trifolium pratense HOM05D000150 ORTHO05D000108 5.7e-07 60.8 101 28.7
FvH4_4g12980 Fragaria vesca HOM05D007138 ORTHO05D009148 7.4e-07 60.5 159 26.4
RcHm_v2.0_Chr4g0412661 Rosa chinensis HOM05D007138 ORTHO05D009148 4.8e-06 57.8 264 25.4


User provided reference genes

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