Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb020500 Zea mays HOM05D006149 ORTHO05D007341 3.0e-59 232.3 123 100.0
Zm00001eb393310 Zea mays HOM05D006149 ORTHO05D007341 2.6e-55 219.2 123 95.1
Os09g0104300 Oryza sativa ssp. japonica HOM05D006149 ORTHO05D007341 3.7e-49 198.7 122 87.7
Sabra09G0073900 Salix brachista HOM05D006149 ORTHO05D007341 7.6e-31 137.9 81 87.7
Potri.001G300300 Populus trichocarpa HOM05D006149 ORTHO05D007341 1.0e-30 137.5 78 89.7
HPP92_004777 Vanilla planifolia HOM05D006149 ORTHO05D007341 2.2e-30 136.3 127 62.2
Glyma.10G262200 Glycine max HOM05D006149 ORTHO05D007341 6.5e-30 134.8 80 85.0
Cpa.g.sc76.22 Carica papaya HOM05D006149 ORTHO05D007341 8.5e-30 134.4 81 85.2
Duzib052G0317 Durio zibethinus HOM05D006149 ORTHO05D007341 1.1e-29 134.0 77 88.3
Glyma.20G128800 Glycine max HOM05D006149 ORTHO05D007341 1.1e-29 134.0 80 85.0
Manes.10G076500 Manihot esculenta HOM05D006149 ORTHO05D007341 1.4e-29 133.7 77 87.0
Gohir.A03G186300 Gossypium hirsutum HOM05D006149 ORTHO05D007341 2.5e-29 132.9 77 87.0
Gohir.D02G207100 Gossypium hirsutum HOM05D006149 ORTHO05D007341 2.5e-29 132.9 77 87.0
Gorai.005G235000 Gossypium raimondii HOM05D006149 ORTHO05D007341 2.5e-29 132.9 77 87.0
TWI32G0763 Tripterygium wilfordii HOM05D006149 ORTHO05D007341 2.5e-29 132.9 123 60.2
CSS0036049 Camellia sinensis var. sinensis HOM05D006149 ORTHO05D007341 3.2e-29 132.5 127 61.4
Cfa004575 Carpinus fangiana HOM05D006149 ORTHO05D007341 4.2e-29 132.1 77 85.7
Ciclev10029393m.g Citrus clementina HOM05D006149 ORTHO05D007341 4.2e-29 132.1 77 85.7
arahy.Tifrunner.gnm1.ann1.0F7AFP Arachis hypogaea HOM05D006149 ORTHO05D007341 5.5e-29 131.7 80 82.5
VMungo0720G1566 Vigna mungo HOM05D006149 ORTHO05D007341 5.5e-29 131.7 80 83.8
CDE02G2507 Ceratophyllum demersum HOM05D006149 ORTHO05D007341 7.2e-29 131.3 77 85.7
CDE02G4185 Ceratophyllum demersum HOM05D006149 ORTHO05D007341 7.2e-29 131.3 77 85.7
Sc08g0001390 Simmondsia chinensis HOM05D006149 ORTHO05D007341 7.2e-29 131.3 110 65.5
ClCG05G010280 Citrullus lanatus HOM05D006149 ORTHO05D007341 9.3e-29 131.0 78 83.3
MELO3C019546.2 Cucumis melo HOM05D006149 ORTHO05D007341 9.3e-29 131.0 78 83.3
CsaV3_3G018210 Cucumis sativus L. HOM05D006149 ORTHO05D007341 9.3e-29 131.0 78 83.3
THA.LOC104807242 Tarenaya hassleriana HOM05D006149 ORTHO05D007341 9.3e-29 131.0 77 84.4
Thecc.02G107700 Theobroma cacao HOM05D006149 ORTHO05D007341 9.3e-29 131.0 77 87.0
TWI34G0529 Tripterygium wilfordii HOM05D006149 ORTHO05D007341 9.3e-29 131.0 123 61.8
CDE04G1609 Ceratophyllum demersum HOM05D006149 ORTHO05D007341 1.2e-28 130.6 117 63.2
COL.COLO4_32597 Corchorus olitorius HOM05D006149 ORTHO05D007341 1.2e-28 130.6 117 63.2
Nn1g04703 Nelumbo nucifera HOM05D006149 ORTHO05D007341 1.2e-28 130.6 76 86.8
Phvul.007G040000 Phaseolus vulgaris HOM05D006149 ORTHO05D007341 1.2e-28 130.6 80 82.5
Psat6g219120 Pisum sativum HOM05D006149 ORTHO05D007341 1.2e-28 130.6 77 83.1
arahy.Tifrunner.gnm1.ann1.GUMB1Z Arachis hypogaea HOM05D006149 ORTHO05D007341 1.6e-28 130.2 80 81.2
Carub.0003s2910 Capsella rubella HOM05D006149 ORTHO05D007341 1.6e-28 130.2 76 88.2
FvH4_2g05220 Fragaria vesca HOM05D006149 ORTHO05D007341 1.6e-28 130.2 77 84.4
FAN15G1894 Fragaria x ananassa HOM05D006149 ORTHO05D007341 1.6e-28 130.2 77 84.4
FAN24G0478 Fragaria x ananassa HOM05D000289 ORTHO05D007341 1.6e-28 130.2 77 84.4
FAN27G1351 Fragaria x ananassa HOM05D000289 ORTHO05D007341 1.6e-28 130.2 77 84.4
PGR142G0815 Punica granatum HOM05D006149 ORTHO05D007341 1.6e-28 130.2 110 66.4
RcHm_v2.0_Chr6g0255351 Rosa chinensis HOM05D006149 ORTHO05D007341 1.6e-28 130.2 77 84.4
Hund06318 Selenicereus undatus HOM05D006149 ORTHO05D007341 1.6e-28 130.2 77 84.4
BcaB03g16271 Brassica carinata HOM05D006149 ORTHO05D007341 2.1e-28 129.8 76 86.8
BcaC06g36046 Brassica carinata HOM05D006149 ORTHO05D007341 2.1e-28 129.8 76 88.2
A07p05350 Brassica napus HOM05D006149 ORTHO05D007341 2.1e-28 129.8 76 86.8
BraA07t28328Z Brassica rapa HOM05D006149 ORTHO05D007341 2.1e-28 129.8 76 86.8
AT2G15270 Arabidopsis thaliana HOM05D006149 ORTHO05D007341 2.7e-28 129.4 76 88.2
BcaC04g22139 Brassica carinata HOM05D006149 ORTHO05D007341 2.7e-28 129.4 76 86.8
C07p08530 Brassica napus HOM05D006149 ORTHO05D007341 2.7e-28 129.4 76 86.8
BolC7t41265H Brassica oleracea HOM05D006149 ORTHO05D007341 2.7e-28 129.4 76 86.8
CARHR105640 Cardamine hirsuta HOM05D006149 ORTHO05D007341 2.7e-28 129.4 76 88.2
THA.LOC104819555 Tarenaya hassleriana HOM05D006149 ORTHO05D007341 2.7e-28 129.4 73 90.4
Ca_11076_v3 Cicer arietinum L. HOM05D006149 ORTHO05D007341 3.6e-28 129.0 77 81.8
Lj5g0003815 Lotus japonicus HOM05D006149 ORTHO05D007341 3.6e-28 129.0 77 81.8
Nitab4.5_0002815g0010 Nicotiana tabacum HOM05D006149 ORTHO05D007341 3.6e-28 129.0 75 88.0
Nitab4.5_0005392g0090 Nicotiana tabacum HOM05D006149 ORTHO05D007341 3.6e-28 129.0 75 88.0
AL3G46990 Arabidopsis lyrata HOM05D006149 ORTHO05D007341 4.6e-28 128.6 76 86.8
Medtr1g107435 Medicago truncatula HOM05D006149 ORTHO05D007341 4.6e-28 128.6 77 81.8
Aa31LG8G13110 Aethionema arabicum HOM05D006149 ORTHO05D007341 6.1e-28 128.3 75 86.7
Thhalv10022867m.g Eutrema salsugineum HOM05D006149 ORTHO05D007341 6.1e-28 128.3 76 85.5
Nn4g25119 Nelumbo nucifera HOM05D006149 ORTHO05D007341 6.1e-28 128.3 76 84.2
Sp3g28510 Schrenkiella parvula HOM05D006149 ORTHO05D007341 6.1e-28 128.3 76 85.5
Sed0008540 Sechium edule HOM05D006149 ORTHO05D007341 6.1e-28 128.3 124 58.9
ATR0618G054 Amborella trichopoda HOM05D006149 ORTHO05D007341 7.9e-28 127.9 78 82.1
Dinv42191 Davidia involucrata HOM05D006149 ORTHO05D007341 7.9e-28 127.9 75 85.3
Peaxi162Scf00016g02334 Petunia axillaris HOM05D006149 ORTHO05D007341 7.9e-28 127.9 75 86.7
Sed0001717 Sechium edule HOM05D006149 ORTHO05D007341 7.9e-28 127.9 117 59.0
Dinv15763 Davidia involucrata HOM05D006149 ORTHO05D007341 1.0e-27 127.5 75 85.3
FAN20G0990 Fragaria x ananassa HOM05D006149 ORTHO05D007341 1.0e-27 127.5 75 85.3
CANSAT25G3711 Cannabis sativa HOM05D006149 ORTHO05D007341 1.3e-27 127.1 77 81.8
MD05G1089500 Malus domestica HOM05D006149 ORTHO05D007341 1.8e-27 126.7 76 81.6
CAN.G1231.7 Capsicum annuum HOM05D006149 ORTHO05D007341 2.3e-27 126.3 75 85.3
AUR62039082 Chenopodium quinoa HOM05D006149 ORTHO05D007341 2.3e-27 126.3 77 79.2
Solyc01g107610.4 Solanum lycopersicum HOM05D006149 ORTHO05D007341 3.0e-27 125.9 75 85.3
Sopen01g049800 Solanum pennellii HOM05D006149 ORTHO05D007341 3.0e-27 125.9 75 85.3
PGSC0003DMG400025768 Solanum tuberosum HOM05D006149 ORTHO05D007341 3.0e-27 125.9 75 85.3
TAR628G0594 Trochodendron aralioides HOM05D006149 ORTHO05D007341 3.0e-27 125.9 76 82.9
Rhsim05G0088300 Rhododendron simsii HOM05D006149 ORTHO05D007341 3.9e-27 125.6 75 82.7
SHI05287 Sapria himalayana HOM05D006149 ORTHO05D007341 5.1e-27 125.2 77 81.8
SEGI_00829 Sequoiadendron giganteum HOM05D006149 ORTHO05D007341 5.1e-27 125.2 117 63.2
Lalb_Chr21g0308351 Lupinus albus HOM05D006149 ORTHO05D007341 6.7e-27 124.8 114 63.2
vmacro19450 Vaccinium macrocarpon HOM05D006149 ORTHO05D007341 1.5e-26 123.6 75 81.3
Actinidia27971 Actinidia chinensis HOM05D006149 ORTHO05D007341 2.5e-26 122.9 75 82.7
Lsat_1_v5_gn_9_111221 Lactuca sativa HOM05D006149 ORTHO05D007341 2.5e-26 122.9 78 78.2
Lj9A321G81 Lonicera japonica HOM05D006149 ORTHO05D007341 2.5e-26 122.9 75 81.3
SalBow6G4084 Salvia bowleyana HOM05D006149 ORTHO05D007341 3.3e-26 122.5 75 84.0
Eucgr.E02957 Eucalyptus grandis HOM05D006149 ORTHO05D007341 4.3e-26 122.1 74 83.8
ECA240G2462 Erigeron canadensis HOM05D006149 ORTHO05D007341 5.7e-26 121.7 76 81.6
SGA_v2.0_scaffold225G43080 Striga asiatica HOM05D006149 ORTHO05D007341 5.7e-26 121.7 75 82.7
unitig_22.g5723 Utricularia gibba HOM05D006149 ORTHO05D007341 5.7e-26 121.7 75 82.7
MSTRG.16714 Avicennia marina HOM05D006149 ORTHO05D007341 7.4e-26 121.3 75 82.7
HanXRQChr03g0070291 Helianthus annuus HOM05D006149 ORTHO05D007341 7.4e-26 121.3 76 80.3
BcaB08g34585 Brassica carinata HOM05D006149 ORTHO05D007341 9.7e-26 120.9 78 78.2
AagrBONN_evm.TU.Sc2ySwM_228.2976 Anthoceros agrestis HOM05D006149 ORTHO05D007341 2.2e-25 119.8 77 79.2
Aqoxy3G02908 Aquilegia oxysepala HOM05D006149 ORTHO05D007341 2.2e-25 119.8 76 78.9
CiPaw.05G011400 Carya illinoinensis HOM05D006149 ORTHO05D007341 3.7e-25 119.0 70 82.9
PSO675G5876 Papaver somniferum HOM05D006149 ORTHO05D007341 3.7e-25 119.0 77 75.3
PSO541G1364 Papaver somniferum HOM05D006149 ORTHO05D007341 6.3e-25 118.2 77 75.3
Pp3c2_21780 Physcomitrium patens HOM05D006149 ORTHO05D007341 8.2e-25 117.9 124 58.1
SMO364G0740 Selaginella moellendorffii HOM05D006149 ORTHO05D007341 1.1e-24 117.5 107 60.7
Migut.B00388 Erythranthe guttata HOM05D006149 ORTHO05D007341 1.8e-24 116.7 120 58.3
Pp3c1_15220 Physcomitrium patens HOM05D006149 ORTHO05D007341 1.8e-24 116.7 128 57.8
Sabra16G0188500 Salix brachista HOM05D006149 ORTHO05D007341 2.4e-24 116.3 120 57.5
Prupe.8G134800 Prunus persica HOM05D006149 ORTHO05D007341 4.1e-24 115.5 67 85.1
CANSAT25G0333 Cannabis sativa HOM05D006149 ORTHO05D007341 6.9e-24 114.8 70 81.4
Oeu017469.1 Olea europaea HOM05D006149 ORTHO05D007341 1.2e-23 114.0 71 83.1
QL11p033743 Quercus lobata HOM05D006149 ORTHO05D007341 1.7e-22 110.2 111 56.8
Mapoly0056s0071 Marchantia polymorpha HOM05D006149 ORTHO05D007341 2.2e-22 109.8 88 69.3
AUR62010304 Chenopodium quinoa HOM05D006149 ORTHO05D007341 1.4e-21 107.1 63 81.0
CBR_g44544 Chara braunii HOM05D006149 ORTHO05D007341 4.2e-21 105.5 74 75.7
HanXRQChr02g0033021 Helianthus annuus HOM05D006149 ORTHO05D007341 7.2e-21 104.8 63 82.5
MD05G1088900 Malus domestica HOM05D006149 ORTHO05D007341 7.2e-21 104.8 122 50.8
vmacro02004 Vaccinium macrocarpon HOM05D006149 ORTHO05D007341 2.3e-19 99.8 125 50.4
Rhsim11G0160200 Rhododendron simsii HOM05D006149 ORTHO05D007341 3.0e-19 99.4 127 49.6
Duzib248G1531 Durio zibethinus HOM05D006149 ORTHO05D007341 8.8e-19 97.8 77 72.7
PGR042G0697 Punica granatum HOM05D006149 ORTHO05D007341 2.2e-17 93.2 71 71.8
DCAR_001643 Daucus carota HOM05D006149 ORTHO05D007341 2.8e-17 92.8 61 78.7
EL10Ac9g22279 Beta vulgaris HOM05D006149 ORTHO05D007341 1.9e-13 80.1 78 55.1
Ciclev10006213m.g Citrus clementina HOM05D006149 ORTHO05D007341 2.5e-13 79.7 67 59.7
Haze_10168 Corylus avellana HOM05D006149 ORTHO05D007341 1.2e-12 77.4 207 31.4
Cre03.g193150 Chlamydomonas reinhardtii HOM05D006149 ORTHO05D007341 3.6e-12 75.9 122 41.8
CSS0028016 Camellia sinensis var. sinensis HOM05D006149 ORTHO05D007341 5.2e-11 72.0 89 50.6
Actinidia05494 Actinidia chinensis HOM05D006149 ORTHO05D007341 2.6e-10 69.7 37 89.2
MBI12_g27878_MAGBIO Magnolia biondii HOM05D006149 ORTHO05D007341 5.7e-10 68.6 74 51.4
SMO197G0096 Selaginella moellendorffii HOM05D024641 ORTHO05D007341 1.7e-09 67.0 70 54.3
TAR376G0787 Trochodendron aralioides HOM05D006149 ORTHO05D007341 8.2e-09 64.7 39 82.1
MCO08G345 Micromonas commoda HOM05D006149 ORTHO05D007341 7.0e-08 61.6 73 46.6
Ah.01g018230 Amaranthus hybridus HOM05D006149 ORTHO05D007341 9.1e-08 61.2 45 68.9
QL11p033903 Quercus lobata HOM05D006149 ORTHO05D007341 4.5e-07 58.9 38 76.3
MBI03_g28533_MAGBIO Magnolia biondii HOM05D006149 ORTHO05D007341 6.5e-06 55.1 50 56.0


User provided reference genes

Program Settings