Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb020130 Zea mays HOM05D004092 ORTHO05D005448 0.0e+00 1579.3 854 100.0
Os06g0498500 Oryza sativa ssp. japonica HOM05D004092 ORTHO05D005448 0.0e+00 1172.5 798 76.8
Cfa005512 Carpinus fangiana HOM05D004092 ORTHO05D005448 6.1e-235 818.1 846 55.3
QL04p079824 Quercus lobata HOM05D004092 ORTHO05D005448 1.8e-234 816.6 850 54.9
TAR362G1264 Trochodendron aralioides HOM05D004092 ORTHO05D005448 3.0e-234 815.8 856 54.4
QL04p080030 Quercus lobata HOM05D004092 ORTHO05D005448 2.6e-233 812.8 851 55.0
HPP92_004307 Vanilla planifolia HOM05D004092 ORTHO05D005448 6.3e-232 808.1 849 54.1
Prupe.4G136600 Prunus persica HOM05D004092 ORTHO05D005448 3.5e-230 802.4 862 55.6
MBI18_g01899_MAGBIO Magnolia biondii HOM05D004092 ORTHO05D005448 4.5e-230 802.0 842 55.2
CiPaw.11G063100 Carya illinoinensis HOM05D004092 ORTHO05D005448 7.2e-228 794.7 855 54.5
MELO3C012616.2 Cucumis melo HOM05D004092 ORTHO05D005448 9.4e-228 794.3 837 53.2
Duzib213G0752 Durio zibethinus HOM05D004092 ORTHO05D005448 1.2e-227 793.9 869 52.7
Thecc.07G169400 Theobroma cacao HOM05D004092 ORTHO05D005448 1.4e-226 790.4 861 54.6
GSVIVG01036806001 Vitis vinifera HOM05D004092 ORTHO05D005448 2.0e-225 786.6 855 53.7
CsaV3_7G022820 Cucumis sativus L. HOM05D004092 ORTHO05D005448 9.8e-225 784.3 837 53.4
arahy.Tifrunner.gnm1.ann1.R5WWIH Arachis hypogaea HOM05D004092 ORTHO05D005448 1.3e-224 783.9 844 52.5
ClCG09G022650 Citrullus lanatus HOM05D004092 ORTHO05D005448 3.7e-224 782.3 840 53.2
arahy.Tifrunner.gnm1.ann1.7JS6EV Arachis hypogaea HOM05D004092 ORTHO05D005448 4.8e-224 781.9 845 52.2
Gohir.A13G122400 Gossypium hirsutum HOM05D004092 ORTHO05D005448 9.1e-223 777.7 854 52.1
Lalb_Chr03g0031641 Lupinus albus HOM05D004092 ORTHO05D005448 2.7e-222 776.2 840 52.4
TWI38G0748 Tripterygium wilfordii HOM05D004092 ORTHO05D005448 2.7e-222 776.2 862 52.8
Lalb_Chr01g0007101 Lupinus albus HOM05D004092 ORTHO05D005448 3.5e-222 775.8 845 52.4
Manes.14G011200 Manihot esculenta HOM05D004092 ORTHO05D005448 4.5e-222 775.4 840 53.5
RcHm_v2.0_Chr5g0025821 Rosa chinensis HOM05D004092 ORTHO05D005448 4.5e-222 775.4 862 53.9
Sabra05G0079500 Salix brachista HOM05D004092 ORTHO05D005448 7.7e-222 774.6 850 52.0
MD10G1205100 Malus domestica HOM05D004092 ORTHO05D005448 5.0e-221 771.9 850 52.9
Lj1g0019540 Lotus japonicus HOM05D004092 ORTHO05D005448 1.1e-220 770.8 837 52.8
Oeu051991.1 Olea europaea HOM05D004092 ORTHO05D005448 1.1e-220 770.8 843 51.8
FvH4_3g15370 Fragaria vesca HOM05D004092 ORTHO05D005448 4.2e-220 768.8 853 53.2
CANSAT80G2562 Cannabis sativa HOM05D004092 ORTHO05D005448 7.2e-220 768.1 843 53.0
Gohir.D13G126400 Gossypium hirsutum HOM05D004092 ORTHO05D005448 7.2e-220 768.1 846 52.2
Potri.005G096900 Populus trichocarpa HOM05D004092 ORTHO05D005448 1.2e-219 767.3 845 52.7
Hma1.2p1_0334F.1_g128570 Hydrangea macrophylla HOM05D004092 ORTHO05D005448 1.6e-219 766.9 846 54.3
Gorai.013G141600 Gossypium raimondii HOM05D004092 ORTHO05D005448 3.6e-219 765.8 847 52.3
MD05G1223600 Malus domestica HOM05D004092 ORTHO05D005448 4.7e-219 765.4 846 52.6
THA.LOC104808127 Tarenaya hassleriana HOM05D004092 ORTHO05D005448 2.3e-218 763.1 853 50.2
Atru.chr1.122 Acer truncatum HOM05D004092 ORTHO05D005448 6.8e-218 761.5 843 52.3
MSTRG.7071 Avicennia marina HOM05D004092 ORTHO05D005448 6.8e-218 761.5 842 52.7
Actinidia35425 Actinidia chinensis HOM05D004092 ORTHO05D005448 1.5e-217 760.4 857 52.4
Dinv19600 Davidia involucrata HOM05D004092 ORTHO05D005448 2.0e-217 760.0 851 54.3
Ciclev10004308m.g Citrus clementina HOM05D004092 ORTHO05D005448 7.5e-217 758.1 849 51.7
Sed0009567 Sechium edule HOM05D004092 ORTHO05D005448 1.3e-216 757.3 843 52.0
Ca_07696_v3 Cicer arietinum L. HOM05D004092 ORTHO05D005448 8.3e-216 754.6 853 51.0
Aqoxy3G03661 Aquilegia oxysepala HOM05D004092 ORTHO05D005448 1.4e-215 753.8 841 52.1
CDE01G0334 Ceratophyllum demersum HOM05D004092 ORTHO05D005448 1.4e-215 753.8 843 52.1
DCAR_026669 Daucus carota HOM05D004092 ORTHO05D005448 3.1e-215 752.7 845 53.6
COL.COLO4_07946 Corchorus olitorius HOM05D004092 ORTHO05D005448 4.1e-215 752.3 861 52.6
Peaxi162Scf00041g01738 Petunia axillaris HOM05D004092 ORTHO05D005448 4.1e-215 752.3 837 54.0
CAN.G851.30 Capsicum annuum HOM05D004092 ORTHO05D005448 9.2e-215 751.1 853 49.9
VMungo1127G2087 Vigna mungo HOM05D004092 ORTHO05D005448 1.6e-214 750.4 833 51.6
Medtr7g070240 Medicago truncatula HOM05D004092 ORTHO05D005448 7.7e-214 748.0 849 52.4
Solyc04g074090.4 Solanum lycopersicum HOM05D004092 ORTHO05D005448 7.7e-214 748.0 837 50.8
HanXRQChr11g0335681 Helianthus annuus HOM05D004092 ORTHO05D005448 5.0e-213 745.3 843 51.6
Migut.M01537 Erythranthe guttata HOM05D004092 ORTHO05D005448 8.6e-213 744.6 839 50.7
Phvul.L001854 Phaseolus vulgaris HOM05D004092 ORTHO05D005448 4.3e-212 742.3 836 51.4
Glyma.12G070100 Glycine max HOM05D004092 ORTHO05D005448 5.6e-212 741.9 836 50.5
Phvul.011G076150 Phaseolus vulgaris HOM05D004092 ORTHO05D005448 1.2e-211 740.7 842 51.2
SalBow8G5525 Salvia bowleyana HOM05D004092 ORTHO05D005448 1.6e-211 740.3 833 49.1
ATR0763G063 Amborella trichopoda HOM05D004092 ORTHO05D005448 4.0e-210 735.7 851 51.4
Eucgr.E01785 Eucalyptus grandis HOM05D004092 ORTHO05D005448 4.4e-209 732.3 835 50.1
CSS0013287 Camellia sinensis var. sinensis HOM05D004092 ORTHO05D005448 7.5e-209 731.5 849 51.8
SalBow6G0067 Salvia bowleyana HOM05D004092 ORTHO05D005448 1.3e-208 730.7 843 48.9
Glyma.10G245700 Glycine max HOM05D004092 ORTHO05D005448 2.2e-208 729.9 835 50.1
Lsat_1_v5_gn_7_110180 Lactuca sativa HOM05D004092 ORTHO05D005448 3.7e-208 729.2 846 51.4
TPR.G6646 Trifolium pratense HOM05D004092 ORTHO05D005448 6.4e-208 728.4 866 48.8
FAN11G0738 Fragaria x ananassa HOM05D004092 ORTHO05D005448 8.3e-208 728.0 850 51.3
Cc05_g16260 Coffea canephora HOM05D004092 ORTHO05D005448 5.4e-207 725.3 830 49.9
SGA_v2.0_scaffold186G40203 Striga asiatica HOM05D004092 ORTHO05D005448 5.4e-207 725.3 872 48.6
FAN16G3313 Fragaria x ananassa HOM05D004092 ORTHO05D005448 9.2e-207 724.5 854 51.6
ECA236G4689 Erigeron canadensis HOM05D004092 ORTHO05D005448 1.2e-206 724.2 842 50.2
SalBow6G4089 Salvia bowleyana HOM05D004092 ORTHO05D005448 4.6e-206 722.2 843 48.5
Psat3g124440 Pisum sativum HOM05D004092 ORTHO05D005448 1.3e-205 720.7 828 49.8
Sc08g0008610 Simmondsia chinensis HOM05D004092 ORTHO05D005448 9.5e-204 714.5 798 51.3
PGR044G0523 Punica granatum HOM05D004092 ORTHO05D005448 2.1e-203 713.4 838 51.2
Aa31LG4G1850 Aethionema arabicum HOM05D004092 ORTHO05D005448 2.8e-203 713.0 851 48.4
FAN25G1415 Fragaria x ananassa HOM05D004092 ORTHO05D005448 3.6e-203 712.6 853 53.6
PSO782G4649 Papaver somniferum HOM05D004092 ORTHO05D005448 1.0e-202 711.1 880 48.6
PSO063G0010 Papaver somniferum HOM05D004092 ORTHO05D005448 1.5e-201 707.2 889 47.8
AT1G79150 Arabidopsis thaliana HOM05D004092 ORTHO05D005448 2.5e-196 689.9 855 47.5
Carub.0002s2602 Capsella rubella HOM05D004092 ORTHO05D005448 6.2e-195 685.3 825 48.2
BcaC08g47477 Brassica carinata HOM05D004092 ORTHO05D005448 8.1e-195 684.9 845 49.1
C06p53020 Brassica napus HOM05D004092 ORTHO05D005448 8.1e-195 684.9 845 49.1
BolC6t40319H Brassica oleracea HOM05D004092 ORTHO05D005448 3.1e-194 682.9 842 48.7
AL2G39620 Arabidopsis lyrata HOM05D004092 ORTHO05D005448 3.4e-193 679.5 853 47.1
CARHR072800 Cardamine hirsuta HOM05D004092 ORTHO05D005448 3.4e-193 679.5 844 49.2
A07p44270 Brassica napus HOM05D004092 ORTHO05D005448 9.8e-193 677.9 846 48.7
BraA07t31936Z Brassica rapa HOM05D004092 ORTHO05D005448 9.8e-193 677.9 846 48.7
EL10Ac2g03277 Beta vulgaris HOM05D004092 ORTHO05D005448 3.0e-189 666.4 881 46.5
BcaB02g08669 Brassica carinata HOM05D004092 ORTHO05D005448 6.2e-187 658.7 856 47.0
Nitab4.5_0005777g0060 Nicotiana tabacum HOM05D004092 ORTHO05D005448 9.9e-185 651.4 841 46.8
vmacro09775 Vaccinium macrocarpon HOM05D004092 ORTHO05D005448 2.2e-184 650.2 925 45.0
AUR62026892 Chenopodium quinoa HOM05D004092 ORTHO05D005448 1.2e-182 644.4 842 45.7
Nn5g27645 Nelumbo nucifera HOM05D004092 ORTHO05D005448 6.0e-182 642.1 853 47.2
Nitab4.5_0000232g0210 Nicotiana tabacum HOM05D004092 ORTHO05D005448 7.6e-177 625.2 836 46.3
BcaNung04898 Brassica carinata HOM05D004092 ORTHO05D005448 1.9e-175 620.5 685 50.7
SEGI_30171 Sequoiadendron giganteum HOM05D004092 ORTHO05D005448 7.1e-175 618.6 870 43.9
Thhalv10018125m.g Eutrema salsugineum HOM05D004092 ORTHO05D005448 5.1e-173 612.5 698 50.4
Sp5g34210 Schrenkiella parvula HOM05D004092 ORTHO05D005448 2.6e-169 600.1 630 53.0
AUR62016815 Chenopodium quinoa HOM05D004092 ORTHO05D005448 1.1e-162 578.2 851 43.2
Lju337C5G4 Lonicera japonica HOM05D004092 ORTHO05D005448 6.9e-162 575.5 862 44.1
Phvul.L001940 Phaseolus vulgaris HOM05D004092 ORTHO05D005448 1.1e-154 551.6 556 55.8
AagrBONN_evm.TU.Sc2ySwM_117.3368 Anthoceros agrestis HOM05D004092 ORTHO05D005448 2.7e-150 537.0 874 39.8
unitig_32.g11083 Utricularia gibba HOM05D004092 ORTHO05D005448 1.1e-143 515.0 603 50.9
SMO169G0313 Selaginella moellendorffii HOM05D004092 ORTHO05D005448 6.7e-133 479.2 857 40.4
Rhsim04G0123500 Rhododendron simsii HOM05D004092 ORTHO05D005448 1.7e-128 464.5 604 46.2
Mapoly0001s0281 Marchantia polymorpha HOM05D004092 ORTHO05D005448 1.9e-127 461.1 837 39.7
Pp3c3_9760 Physcomitrium patens HOM05D004092 ORTHO05D005448 4.2e-127 459.9 885 37.7
CAN.G101.16 Capsicum annuum HOM05D004092 ORTHO05D005448 1.1e-122 445.3 452 54.6
Cpa.g.sc4.30 Carica papaya HOM05D004092 ORTHO05D005448 2.9e-104 384.0 385 55.8
CBR_g30814 Chara braunii HOM05D004092 ORTHO05D005448 2.6e-100 370.9 624 36.7
Rhsim04G0004800 Rhododendron simsii HOM05D004092 ORTHO05D005448 8.0e-94 349.4 304 59.2
Eucgr.G02299 Eucalyptus grandis HOM05D004092 ORTHO05D005448 2.3e-93 347.8 427 46.6
RhsimUnG0180500 Rhododendron simsii HOM05D004092 ORTHO05D005448 6.4e-91 339.7 482 43.6
FAN21G2977 Fragaria x ananassa HOM05D004092 ORTHO05D005448 3.5e-89 334.0 393 49.4
Sopen00g013080 Solanum pennellii HOM05D004092 ORTHO05D005448 4.6e-81 307.0 290 57.2
Hma1.2p1_0334F.1_g128560 Hydrangea macrophylla HOM05D004092 ORTHO05D005448 5.6e-79 300.1 459 44.9
SHI21021 Sapria himalayana HOM05D004092 ORTHO05D005448 1.3e-75 288.9 448 40.6
Eucgr.F00934 Eucalyptus grandis HOM05D004092 ORTHO05D005448 1.4e-69 268.9 330 46.1
Haze_01705 Corylus avellana HOM05D004092 ORTHO05D005448 6.8e-69 266.5 228 62.3
Haze_01706 Corylus avellana HOM05D004092 ORTHO05D005448 6.6e-64 250.0 240 58.8
Sopen00g010230 Solanum pennellii HOM05D004092 ORTHO05D005448 6.6e-64 250.0 200 61.0
Haze_01709 Corylus avellana HOM05D004092 ORTHO05D005448 2.8e-62 244.6 241 56.8
MCO10G157 Micromonas commoda HOM05D004092 ORTHO05D005448 1.4e-61 242.3 693 29.7
CAN.G101.17 Capsicum annuum HOM05D004092 ORTHO05D005448 1.7e-56 225.3 344 42.4
SHI21022 Sapria himalayana HOM05D004092 ORTHO05D005448 1.9e-47 195.3 184 59.2
Haze_01704 Corylus avellana HOM05D004092 ORTHO05D005448 7.4e-47 193.4 291 44.3
Lsat_1_v5_gn_2_21921 Lactuca sativa HOM05D004092 ORTHO05D005448 1.4e-45 189.1 147 65.3
unitig_32.g11084 Utricularia gibba HOM05D004092 ORTHO05D005448 8.4e-43 179.9 219 46.6
PGR138G0002 Punica granatum HOM05D004092 ORTHO05D005448 5.6e-39 167.2 274 43.8
SalBow7G2721 Salvia bowleyana HOM05D004092 ORTHO05D005448 5.8e-36 157.1 152 51.3
Phvul.011G073301 Phaseolus vulgaris HOM05D004092 ORTHO05D005448 3.0e-32 144.8 185 47.6
Cfa022337 Carpinus fangiana HOM05D004092 ORTHO05D005448 4.3e-31 141.0 597 26.5
SalBow1G6550 Salvia bowleyana HOM05D004092 ORTHO05D005448 4.1e-29 134.4 176 43.2
PRCOL_00003431 Prasinoderma coloniale HOM05D004092 ORTHO05D005448 4.5e-28 131.0 564 25.9
Cre16.g659600 Chlamydomonas reinhardtii HOM05D004092 ORTHO05D005448 8.5e-27 126.7 485 25.4
Cpa.g.sc2160.2 Carica papaya HOM05D004092 ORTHO05D005448 1.2e-25 122.9 71 74.6
Rhsim04G0116800 Rhododendron simsii HOM05D005276 ORTHO05D006813 1.6e-25 122.5 210 40.5
Sopen00g012990 Solanum pennellii HOM05D004092 ORTHO05D005448 2.1e-25 122.1 160 45.6
BolC6t38166H Brassica oleracea HOM05D004092 ORTHO05D005448 2.5e-23 115.2 110 59.1
Psat1g207400 Pisum sativum HOM05D004092 ORTHO05D005448 2.5e-23 115.2 152 47.4
C06p30050 Brassica napus HOM05D004092 ORTHO05D005448 4.1e-21 107.8 112 54.5
Glyma.11G148802 Glycine max HOM05D004092 ORTHO05D016651 3.4e-20 104.8 99 54.5
BcaC08g45374 Brassica carinata HOM05D004092 ORTHO05D005448 4.5e-20 104.4 119 51.3
BcaB02g07203 Brassica carinata HOM05D004092 ORTHO05D005448 5.0e-19 100.9 118 47.5
Rhsim04G0004600 Rhododendron simsii HOM05D004092 ORTHO05D005448 5.7e-15 87.4 121 41.3
Actinidia37125 Actinidia chinensis HOM05D004092 ORTHO05D005448 9.1e-13 80.1 107 43.0
Actinidia37124 Actinidia chinensis HOM05D004092 ORTHO05D005448 1.5e-12 79.3 76 52.6
Phvul.L001640 Phaseolus vulgaris HOM05D004092 ORTHO05D005448 1.7e-11 75.9 59 55.9
arahy.Tifrunner.gnm1.ann1.83PK1U Arachis hypogaea HOM05D004092 ORTHO05D016651 2.2e-11 75.5 81 50.6
QL04p079914 Quercus lobata HOM05D004092 ORTHO05D005448 8.5e-11 73.6 55 61.8
Zm00001eb107580 Zea mays HOM05D000367 ORTHO05D001227 1.1e-10 73.2 107 47.7
A07p27270 Brassica napus HOM05D004092 ORTHO05D005448 1.4e-10 72.8 90 50.0
BraA07t30370Z Brassica rapa HOM05D004092 ORTHO05D005448 1.6e-09 69.3 93 47.3
Actinidia37123 Actinidia chinensis HOM05D004092 ORTHO05D005448 6.7e-08 63.9 91 49.5
ECA232G3953 Erigeron canadensis HOM05D015936 ORTHO05D022524 3.7e-06 58.2 62 50.0


User provided reference genes

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