Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb019600 Zea mays HOM05D003803 ORTHO05D004456 2.0e-88 329.3 199 100.0
Os03g0407400 Oryza sativa ssp. japonica HOM05D003803 ORTHO05D004456 8.2e-42 174.5 107 76.6
PSO421G0234 Papaver somniferum HOM05D003803 ORTHO05D004456 7.5e-19 98.2 141 42.6
HPP92_004363 Vanilla planifolia HOM05D003803 ORTHO05D004456 2.9e-18 96.3 87 51.7
PSO104G0196 Papaver somniferum HOM05D003803 ORTHO05D004456 6.4e-18 95.1 135 42.2
Solyc07g041980.3 Solanum lycopersicum HOM05D003803 ORTHO05D004456 4.1e-17 92.4 136 45.6
Zm00001eb100230 Zea mays HOM05D003803 ORTHO05D004456 5.4e-17 92.0 97 49.5
Nn8g38618 Nelumbo nucifera HOM05D003803 ORTHO05D004456 7.0e-17 91.7 124 45.2
Sp6g23850 Schrenkiella parvula HOM05D003803 ORTHO05D004456 1.2e-16 90.9 134 44.0
C03p11700 Brassica napus HOM05D003803 ORTHO05D004456 3.5e-16 89.4 131 43.5
BolC3t13641H Brassica oleracea HOM05D003803 ORTHO05D004456 3.5e-16 89.4 131 43.5
Phvul.003G130200 Phaseolus vulgaris HOM05D003803 ORTHO05D004456 1.0e-15 87.8 137 43.1
TWI34G0129 Tripterygium wilfordii HOM05D003803 ORTHO05D004456 1.0e-15 87.8 119 43.7
BcaB01g04775 Brassica carinata HOM05D003803 ORTHO05D004456 1.3e-15 87.4 80 53.8
Dinv42400 Davidia involucrata HOM05D003803 ORTHO05D004456 1.3e-15 87.4 123 43.9
MD02G1093600 Malus domestica HOM05D003803 ORTHO05D004456 1.7e-15 87.0 136 41.2
Oeu007415.1 Olea europaea HOM05D003803 ORTHO05D004456 1.7e-15 87.0 136 39.7
Manes.16G094800 Manihot esculenta HOM05D003803 ORTHO05D004456 3.0e-15 86.3 122 42.6
Zm00001eb314160 Zea mays HOM05D003803 ORTHO05D004456 3.0e-15 86.3 135 40.7
Hma1.2p1_0169F.1_g074460 Hydrangea macrophylla HOM05D003803 ORTHO05D004456 5.0e-15 85.5 118 45.8
MD15G1218900 Malus domestica HOM05D003803 ORTHO05D004456 5.0e-15 85.5 139 39.6
Os08g0456600 Oryza sativa ssp. japonica HOM05D003803 ORTHO05D004456 5.0e-15 85.5 143 39.2
CAN.G595.3 Capsicum annuum HOM05D003803 ORTHO05D004456 6.6e-15 85.1 122 47.5
Carub.0006s1897 Capsella rubella HOM05D003803 ORTHO05D004456 8.6e-15 84.7 98 45.9
Sabra06G0110200 Salix brachista HOM05D003803 ORTHO05D004456 8.6e-15 84.7 116 40.5
A03p10180 Brassica napus HOM05D003803 ORTHO05D004456 1.5e-14 84.0 131 40.5
BraA03t10328Z Brassica rapa HOM05D003803 ORTHO05D004456 1.5e-14 84.0 131 40.5
CDE05G2490 Ceratophyllum demersum HOM05D003803 ORTHO05D004456 2.5e-14 83.2 69 55.1
RcHm_v2.0_Chr2g0095321 Rosa chinensis HOM05D003803 ORTHO05D004456 2.5e-14 83.2 129 42.6
TAR624G1266 Trochodendron aralioides HOM05D003803 ORTHO05D004456 3.3e-14 82.8 145 38.6
HPP92_016238 Vanilla planifolia HOM05D003803 ORTHO05D004456 3.3e-14 82.8 73 54.8
AL6G32180 Arabidopsis lyrata HOM05D003803 ORTHO05D004456 4.3e-14 82.4 131 40.5
CARHR192170 Cardamine hirsuta HOM05D003803 ORTHO05D004456 4.3e-14 82.4 130 40.0
TWI63G1012 Tripterygium wilfordii HOM05D003803 ORTHO05D004456 4.3e-14 82.4 97 45.4
CiPaw.03G205300 Carya illinoinensis HOM05D003803 ORTHO05D004456 5.6e-14 82.0 112 42.0
Thecc.09G075700 Theobroma cacao HOM05D003803 ORTHO05D004456 5.6e-14 82.0 97 46.4
Duzib150G1133 Durio zibethinus HOM05D003803 ORTHO05D004456 7.3e-14 81.6 97 44.3
Glyma.17G048600 Glycine max HOM05D003803 ORTHO05D004456 7.3e-14 81.6 112 43.8
AT5G20635 Arabidopsis thaliana HOM05D003803 ORTHO05D004456 9.5e-14 81.3 131 40.5
Thhalv10014548m.g Eutrema salsugineum HOM05D003803 ORTHO05D004456 9.5e-14 81.3 64 62.5
BolC2t07055H Brassica oleracea HOM05D003803 ORTHO05D004456 1.6e-13 80.5 130 37.7
Eucgr.C03259 Eucalyptus grandis HOM05D003803 ORTHO05D004456 1.6e-13 80.5 136 42.6
Potri.006G141100 Populus trichocarpa HOM05D003803 ORTHO05D004456 1.6e-13 80.5 122 41.0
A10p19380 Brassica napus HOM05D003803 ORTHO05D004456 2.1e-13 80.1 139 38.1
Manes.03G041000 Manihot esculenta HOM05D003803 ORTHO05D004456 2.1e-13 80.1 97 43.3
QL11p000998 Quercus lobata HOM05D003803 ORTHO05D004456 2.8e-13 79.7 96 44.8
CANSAT56G4286 Cannabis sativa HOM05D003803 ORTHO05D004456 3.6e-13 79.3 103 43.7
Duzib168G2099 Durio zibethinus HOM05D003803 ORTHO05D004456 3.6e-13 79.3 97 45.4
Duzib187G1358 Durio zibethinus HOM05D003803 ORTHO05D004456 3.6e-13 79.3 97 46.4
FvH4_1g08850 Fragaria vesca HOM05D003803 ORTHO05D004456 3.6e-13 79.3 140 37.9
Sopen07g021560 Solanum pennellii HOM05D003803 ORTHO05D004456 3.6e-13 79.3 79 54.4
Actinidia30227 Actinidia chinensis HOM05D003803 ORTHO05D004456 6.2e-13 78.6 98 43.9
Lalb_Chr13g0299401 Lupinus albus HOM05D003803 ORTHO05D004456 6.2e-13 78.6 122 41.0
Prupe.7G197000 Prunus persica HOM05D003803 ORTHO05D004456 6.2e-13 78.6 136 38.2
Lj4g0012858 Lotus japonicus HOM05D003803 ORTHO05D004456 1.1e-12 77.8 95 44.2
PGR044G0570 Punica granatum HOM05D003803 ORTHO05D004456 1.1e-12 77.8 121 43.0
A02p06390 Brassica napus HOM05D003803 ORTHO05D004456 1.4e-12 77.4 130 36.9
BraA02t05584Z Brassica rapa HOM05D003803 ORTHO05D004456 1.4e-12 77.4 130 36.9
CiPaw.04G142500 Carya illinoinensis HOM05D003803 ORTHO05D004456 1.8e-12 77.0 137 40.1
Actinidia39653 Actinidia chinensis HOM05D003803 ORTHO05D004456 2.3e-12 76.6 64 56.2
Migut.L01571 Erythranthe guttata HOM05D003803 ORTHO05D004456 2.3e-12 76.6 150 36.0
Os09g0441900 Oryza sativa ssp. japonica HOM05D003803 ORTHO05D004456 2.3e-12 76.6 73 52.1
THA.LOC104810996 Tarenaya hassleriana HOM05D003803 ORTHO05D004456 2.3e-12 76.6 69 52.2
Ciclev10010564m.g Citrus clementina HOM05D003803 ORTHO05D004456 3.1e-12 76.3 98 41.8
SEGI_34897 Sequoiadendron giganteum HOM05D003803 ORTHO05D004456 3.1e-12 76.3 92 40.2
Gorai.013G223800 Gossypium raimondii HOM05D003803 ORTHO05D004456 4.0e-12 75.9 97 43.3
Manes.11G018700 Manihot esculenta HOM05D003803 ORTHO05D004456 4.0e-12 75.9 134 37.3
Psat1g134600 Pisum sativum HOM05D003803 ORTHO05D004456 4.0e-12 75.9 145 35.2
Aqoxy7G01029 Aquilegia oxysepala HOM05D003803 ORTHO05D004456 5.2e-12 75.5 64 57.8
Nn6g35693 Nelumbo nucifera HOM05D003803 ORTHO05D004456 5.2e-12 75.5 135 39.3
THA.LOC104799616 Tarenaya hassleriana HOM05D003803 ORTHO05D004456 5.2e-12 75.5 142 37.3
Cc06_g12240 Coffea canephora HOM05D003803 ORTHO05D004456 6.8e-12 75.1 135 38.5
CsaV3_2G001120 Cucumis sativus L. HOM05D003803 ORTHO05D004456 6.8e-12 75.1 133 37.6
ATR0598G175 Amborella trichopoda HOM05D003803 ORTHO05D004456 8.9e-12 74.7 69 49.3
BraA10t44015Z Brassica rapa HOM05D003803 ORTHO05D004456 8.9e-12 74.7 152 36.2
FAN28G2731 Fragaria x ananassa HOM05D003803 ORTHO05D004456 8.9e-12 74.7 70 48.6
Gohir.A06G077000 Gossypium hirsutum HOM05D003803 ORTHO05D004456 1.2e-11 74.3 118 39.8
Gohir.A13G190300 Gossypium hirsutum HOM05D003803 ORTHO05D004456 1.2e-11 74.3 97 43.3
Gohir.D13G196350 Gossypium hirsutum HOM05D003803 ORTHO05D004456 1.2e-11 74.3 97 43.3
Glyma.09G070100 Glycine max HOM05D003803 ORTHO05D004456 2.0e-11 73.6 104 42.3
SEGI_33452 Sequoiadendron giganteum HOM05D003803 ORTHO05D004456 2.0e-11 73.6 102 38.2
Nitab4.5_0000343g0290 Nicotiana tabacum HOM05D003803 ORTHO05D004456 2.6e-11 73.2 73 53.4
GSVIVG01015067001 Vitis vinifera HOM05D003803 ORTHO05D004456 2.6e-11 73.2 70 54.3
Gorai.010G088900 Gossypium raimondii HOM05D003803 ORTHO05D004456 3.4e-11 72.8 98 40.8
Potri.018G062400 Populus trichocarpa HOM05D003803 ORTHO05D004456 3.4e-11 72.8 120 38.3
VMungo1215G1786 Vigna mungo HOM05D003803 ORTHO05D004456 3.4e-11 72.8 98 41.8
BcaB08g36515 Brassica carinata HOM05D003803 ORTHO05D004456 4.4e-11 72.4 69 53.6
Dinv25550 Davidia involucrata HOM05D003803 ORTHO05D004456 4.4e-11 72.4 64 56.2
SalBow5G3024 Salvia bowleyana HOM05D003803 ORTHO05D004456 4.4e-11 72.4 136 36.8
SalBow5G4531 Salvia bowleyana HOM05D003803 ORTHO05D004456 4.4e-11 72.4 136 36.8
MSTRG.26474 Avicennia marina HOM05D003803 ORTHO05D004456 7.5e-11 71.6 96 41.7
Gorai.001G015700 Gossypium raimondii HOM05D003803 ORTHO05D004456 7.5e-11 71.6 98 40.8
Cpa.g.sc28.25 Carica papaya HOM05D003803 ORTHO05D004456 9.8e-11 71.2 64 51.6
Lj6g0024210 Lotus japonicus HOM05D003803 ORTHO05D004456 9.8e-11 71.2 120 38.3
FAN26G0190 Fragaria x ananassa HOM05D003803 ORTHO05D004456 1.3e-10 70.9 70 47.1
Sed0004681 Sechium edule HOM05D003803 ORTHO05D004456 1.3e-10 70.9 143 36.4
Sc15g0000470 Simmondsia chinensis HOM05D003803 ORTHO05D004456 1.3e-10 70.9 102 43.1
Lalb_Chr07g0181211 Lupinus albus HOM05D003803 ORTHO05D004456 1.7e-10 70.5 139 34.5
Glyma.15G178100 Glycine max HOM05D003803 ORTHO05D004456 2.2e-10 70.1 104 40.4
Gohir.D06G076000 Gossypium hirsutum HOM05D003803 ORTHO05D004456 2.2e-10 70.1 119 39.5
Peaxi162Scf00348g00817 Petunia axillaris HOM05D003803 ORTHO05D004456 2.9e-10 69.7 64 53.1
Glyma.13G110900 Glycine max HOM05D003803 ORTHO05D004456 3.7e-10 69.3 94 44.7
MELO3C015527.2 Cucumis melo HOM05D003803 ORTHO05D004456 4.9e-10 68.9 122 36.1
Medtr2g042200 Medicago truncatula HOM05D003803 ORTHO05D004456 6.4e-10 68.6 64 51.6
TPR.G16739 Trifolium pratense HOM05D003803 ORTHO05D004456 6.4e-10 68.6 87 42.5
Gohir.A07G015200 Gossypium hirsutum HOM05D003803 ORTHO05D004456 8.3e-10 68.2 98 39.8
Psat4g018440 Pisum sativum HOM05D003803 ORTHO05D004456 8.3e-10 68.2 91 42.9
MELO3C004657.2 Cucumis melo HOM05D003803 ORTHO05D004456 1.1e-09 67.8 62 51.6
ClCG03G015020 Citrullus lanatus HOM05D003803 ORTHO05D004456 1.9e-09 67.0 97 40.2
Actinidia29937 Actinidia chinensis HOM05D003803 ORTHO05D004456 2.4e-09 66.6 146 32.9
Sed0026577 Sechium edule HOM05D003803 ORTHO05D004456 3.2e-09 66.2 72 47.2
TPR.G12599 Trifolium pratense HOM05D003803 ORTHO05D004456 3.2e-09 66.2 144 34.0
Medtr8g021170 Medicago truncatula HOM05D003803 ORTHO05D004456 4.1e-09 65.9 133 37.6
TPR.G8075 Trifolium pratense HOM05D003803 ORTHO05D004456 7.0e-09 65.1 64 48.4
Atru.chr1.4007 Acer truncatum HOM05D003803 ORTHO05D004456 1.2e-08 64.3 63 47.6
Glyma.07G040200 Glycine max HOM05D003803 ORTHO05D004456 1.2e-08 64.3 94 40.4
Psat4g168440 Pisum sativum HOM05D003803 ORTHO05D004456 1.2e-08 64.3 62 50.0
QL05p003994 Quercus lobata HOM05D003803 ORTHO05D004456 1.2e-08 64.3 69 46.4
COL.COLO4_30738 Corchorus olitorius HOM05D003803 ORTHO05D004456 1.6e-08 63.9 62 48.4
Hma1.2p1_0179F.1_g079480 Hydrangea macrophylla HOM05D003803 ORTHO05D004456 1.6e-08 63.9 54 55.6
C09p55600 Brassica napus HOM05D003803 ORTHO05D004456 2.0e-08 63.5 125 34.4
HanXRQChr10g0319741 Helianthus annuus HOM05D003803 ORTHO05D004456 2.0e-08 63.5 101 37.6
FAN23G2205 Fragaria x ananassa HOM05D003803 ORTHO05D004456 4.6e-08 62.4 55 52.7
BolC9t58422H Brassica oleracea HOM05D003803 ORTHO05D004456 7.8e-08 61.6 141 33.3
Sc18g0002620 Simmondsia chinensis HOM05D003803 ORTHO05D004456 1.0e-07 61.2 136 33.8
FAN19G2912 Fragaria x ananassa HOM05D003803 ORTHO05D004456 1.3e-07 60.8 53 54.7
AagrBONN_evm.TU.Sc2ySwM_362.2112 Anthoceros agrestis HOM05D002369 ORTHO05D002435 1.7e-07 60.5 92 34.8
Lalb_Chr11g0074261 Lupinus albus HOM05D003803 ORTHO05D004456 1.7e-07 60.5 110 34.5
Atru.chr7.1717 Acer truncatum HOM05D003803 ORTHO05D004456 3.0e-07 59.7 51 56.9
arahy.Tifrunner.gnm1.ann1.1Y26QK Arachis hypogaea HOM05D003803 ORTHO05D004456 3.9e-07 59.3 88 38.6
arahy.Tifrunner.gnm1.ann1.KPGD7J Arachis hypogaea HOM05D003803 ORTHO05D004456 3.9e-07 59.3 88 38.6
Oeu000278.1 Olea europaea HOM05D003803 ORTHO05D004456 3.9e-07 59.3 136 36.0
Lalb_Chr04g0263591 Lupinus albus HOM05D003803 ORTHO05D004456 1.9e-06 57.0 140 34.3
CsaV3_1G041120 Cucumis sativus L. HOM05D003803 ORTHO05D004456 5.6e-06 55.5 57 47.4
ECA232G3825 Erigeron canadensis HOM05D003803 ORTHO05D004456 5.6e-06 55.5 156 28.2
Lsat_1_v5_gn_4_94241 Lactuca sativa HOM05D003803 ORTHO05D004456 5.6e-06 55.5 74 41.9
SGA_v2.0_scaffold21G09503 Striga asiatica HOM05D003803 ORTHO05D004456 5.6e-06 55.5 77 45.5


User provided reference genes

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