Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb019260 Zea mays HOM05D004560 ORTHO05D005540 0.0e+00 4050.7 2270 100.0
MBI02_g02993_MAGBIO Magnolia biondii HOM05D004560 ORTHO05D005540 0.0e+00 1109.7 2520 39.7
Nn1g04868 Nelumbo nucifera HOM05D004560 ORTHO05D005540 3.1e-311 1073.2 2554 40.1
TAR376G0591 Trochodendron aralioides HOM05D004560 ORTHO05D005540 6.5e-300 1035.4 2550 38.5
Cfa004012 Carpinus fangiana HOM05D004560 ORTHO05D005540 1.9e-291 1007.3 2523 38.8
QL06p041719 Quercus lobata HOM05D004560 ORTHO05D005540 3.8e-284 983.0 2543 37.8
CiPaw.02G008700 Carya illinoinensis HOM05D004560 ORTHO05D005540 3.0e-281 973.4 2537 38.5
Ciclev10024681m.g Citrus clementina HOM05D004560 ORTHO05D005540 1.1e-280 971.5 2515 37.9
Os03g0395600 Oryza sativa ssp. japonica HOM05D004560 ORTHO05D005540 1.1e-280 971.5 773 71.3
Thecc.01G055000 Theobroma cacao HOM05D004560 ORTHO05D005540 3.3e-280 969.9 2529 38.0
CANSAT01G1534 Cannabis sativa HOM05D004560 ORTHO05D005540 4.4e-280 969.5 2498 37.6
Nn5g30326 Nelumbo nucifera HOM05D004560 ORTHO05D005540 8.2e-279 965.3 2302 39.3
CSS0026663 Camellia sinensis var. sinensis HOM05D004560 ORTHO05D005540 4.1e-278 963.0 2541 38.7
Prupe.7G134200 Prunus persica HOM05D004560 ORTHO05D005540 2.6e-272 943.7 2552 37.6
Aqoxy5G01239 Aquilegia oxysepala HOM05D004560 ORTHO05D005540 3.3e-272 943.3 2521 36.9
VMungo0251G0843 Vigna mungo HOM05D004560 ORTHO05D005540 2.8e-271 940.3 2432 38.7
Manes.12G101400 Manihot esculenta HOM05D004560 ORTHO05D005540 4.8e-271 939.5 2508 37.9
MD15G1283100 Malus domestica HOM05D004560 ORTHO05D005540 4.5e-269 932.9 2557 36.9
Duzib187G0053 Durio zibethinus HOM05D004560 ORTHO05D005540 1.0e-268 931.8 2528 38.2
Phvul.003G244225 Phaseolus vulgaris HOM05D004560 ORTHO05D005540 1.0e-268 931.8 2426 37.8
arahy.Tifrunner.gnm1.ann1.TDMJ0N Arachis hypogaea HOM05D004560 ORTHO05D005540 2.2e-268 930.6 2496 38.0
Actinidia03789 Actinidia chinensis HOM05D004560 ORTHO05D005540 1.9e-267 927.5 2546 37.9
Lj4g0000036 Lotus japonicus HOM05D004560 ORTHO05D005540 3.6e-266 923.3 2484 36.6
MD02G1171200 Malus domestica HOM05D004560 ORTHO05D005540 6.1e-266 922.5 2560 36.4
FvH4_5g28170 Fragaria vesca HOM05D004560 ORTHO05D005540 1.4e-265 921.4 2569 36.6
Potri.005G137700 Populus trichocarpa HOM05D004560 ORTHO05D005540 5.2e-265 919.5 2511 38.5
FAN04G2449 Fragaria x ananassa HOM05D004560 ORTHO05D005540 2.0e-264 917.5 2578 36.3
arahy.Tifrunner.gnm1.ann1.IC24VR Arachis hypogaea HOM05D004560 ORTHO05D005540 3.3e-264 916.8 2493 37.9
Manes.12G101200 Manihot esculenta HOM05D004560 ORTHO05D005540 2.8e-263 913.7 2524 37.4
Duzib147G0064 Durio zibethinus HOM05D004560 ORTHO05D005540 8.2e-263 912.1 2514 37.6
FAN18G2522 Fragaria x ananassa HOM05D004560 ORTHO05D005540 2.4e-262 910.6 2572 36.4
Potri.007G043300 Populus trichocarpa HOM05D004560 ORTHO05D005540 3.1e-262 910.2 2520 37.5
Gorai.008G075400 Gossypium raimondii HOM05D004560 ORTHO05D005540 5.3e-262 909.4 2526 36.4
Glyma.17G175000 Glycine max HOM05D004560 ORTHO05D005540 4.5e-261 906.4 2449 37.8
Oeu039071.1 Olea europaea HOM05D004560 ORTHO05D005540 5.9e-261 906.0 2525 36.7
FAN08G1993 Fragaria x ananassa HOM05D004560 ORTHO05D005540 2.2e-260 904.0 2579 35.9
Gohir.A12G072000 Gossypium hirsutum HOM05D004560 ORTHO05D005540 3.0e-257 893.6 2527 36.6
RcHm_v2.0_Chr2g0105371 Rosa chinensis HOM05D004560 ORTHO05D005540 8.8e-257 892.1 2407 36.9
Ca_19501_v3 Cicer arietinum L. HOM05D004560 ORTHO05D005540 1.2e-256 891.7 2489 37.2
Gohir.D12G068900 Gossypium hirsutum HOM05D004560 ORTHO05D005540 1.2e-256 891.7 2533 36.2
Dinv39857 Davidia involucrata HOM05D004560 ORTHO05D005540 2.0e-256 891.0 2044 39.7
TWI09G1111 Tripterygium wilfordii HOM05D004560 ORTHO05D005540 4.4e-256 889.8 2484 37.4
Nitab4.5_0001034g0140 Nicotiana tabacum HOM05D004560 ORTHO05D005540 1.7e-255 887.9 2532 36.1
TAR381G0340 Trochodendron aralioides HOM05D004560 ORTHO05D005540 1.1e-254 885.2 2505 36.2
Nitab4.5_0002016g0010 Nicotiana tabacum HOM05D004560 ORTHO05D005540 3.1e-254 883.6 2546 35.6
Duzib264G0542 Durio zibethinus HOM05D004560 ORTHO05D005540 3.3e-251 873.6 2520 37.0
TWI73G0239 Tripterygium wilfordii HOM05D004560 ORTHO05D005540 5.5e-251 872.8 2502 36.7
vmacro17949 Vaccinium macrocarpon HOM05D004560 ORTHO05D005540 2.8e-250 870.5 2452 38.1
Lj7A70T81 Lonicera japonica HOM05D004560 ORTHO05D005540 3.6e-250 870.2 2529 37.6
Sabra05G0109900 Salix brachista HOM05D004560 ORTHO05D005540 4.4e-248 863.2 2483 36.1
CAN.G836.79 Capsicum annuum HOM05D004560 ORTHO05D005540 9.8e-248 862.1 2513 35.6
TPR.G10251 Trifolium pratense HOM05D004560 ORTHO05D005540 1.3e-247 861.7 2503 36.6
Psat4g089080 Pisum sativum HOM05D004560 ORTHO05D005540 2.7e-245 854.0 2513 34.3
GSVIVG01022139001 Vitis vinifera HOM05D004560 ORTHO05D005540 3.5e-245 853.6 2356 37.9
Gorai.008G075200 Gossypium raimondii HOM05D004560 ORTHO05D005540 7.8e-245 852.4 2533 36.0
ClCG01G016790 Citrullus lanatus HOM05D004560 ORTHO05D005540 1.0e-244 852.0 2512 36.9
Peaxi162Scf00450g00514 Petunia axillaris HOM05D004560 ORTHO05D005540 1.0e-244 852.0 2644 35.1
Gohir.A12G070800 Gossypium hirsutum HOM05D004560 ORTHO05D005540 1.1e-243 848.6 2531 35.4
PSO384G0851 Papaver somniferum HOM05D004560 ORTHO05D005540 2.5e-243 847.4 2557 33.7
Eucgr.I00932 Eucalyptus grandis HOM05D004560 ORTHO05D005540 2.8e-242 844.0 2502 37.5
Sopen02g035390 Solanum pennellii HOM05D004560 ORTHO05D005540 4.7e-242 843.2 2506 36.9
Gohir.D12G068700 Gossypium hirsutum HOM05D004560 ORTHO05D005540 8.0e-242 842.4 2530 35.7
Sc03g0001520 Simmondsia chinensis HOM05D004560 ORTHO05D005540 3.0e-241 840.5 2539 36.7
COL.COLO4_11405 Corchorus olitorius HOM05D004560 ORTHO05D005540 5.8e-240 836.3 2484 36.6
Glyma.05G096000 Glycine max HOM05D004560 ORTHO05D005540 1.9e-238 831.2 2453 38.1
PSO135G0768 Papaver somniferum HOM05D004560 ORTHO05D005540 1.9e-238 831.2 2543 34.2
AUR62003874 Chenopodium quinoa HOM05D004560 ORTHO05D005540 2.4e-238 830.9 2382 35.8
CsaV3_6G043220 Cucumis sativus L. HOM05D004560 ORTHO05D005540 2.0e-237 827.8 2509 36.5
Sabra07G0038200 Salix brachista HOM05D004560 ORTHO05D005540 3.5e-237 827.0 2506 35.8
TWI53G0832 Tripterygium wilfordii HOM05D004560 ORTHO05D005540 3.5e-237 827.0 2513 36.1
AUR62001937 Chenopodium quinoa HOM05D004560 ORTHO05D005540 5.4e-230 803.1 2315 35.6
Rhsim08G0100900 Rhododendron simsii HOM05D004560 ORTHO05D005540 1.2e-229 802.0 2503 36.6
Solyc02g090760.4 Solanum lycopersicum HOM05D004560 ORTHO05D005540 4.3e-227 793.5 2356 36.2
ECA238G3505 Erigeron canadensis HOM05D004560 ORTHO05D005540 2.1e-226 791.2 2457 35.2
Hund13557 Selenicereus undatus HOM05D004560 ORTHO05D005540 6.2e-226 789.6 2518 35.7
CSS0033893 Camellia sinensis var. sinensis HOM05D004560 ORTHO05D005540 1.4e-225 788.5 2109 38.6
Lalb_Chr09g0323121 Lupinus albus HOM05D004560 ORTHO05D005540 3.1e-225 787.3 2438 34.9
PSO017G5866 Papaver somniferum HOM05D004560 ORTHO05D005540 1.4e-222 778.5 2462 34.0
PGR031G0319 Punica granatum HOM05D004560 ORTHO05D005540 3.2e-222 777.3 2494 36.1
Lalb_Chr16g0378501 Lupinus albus HOM05D004560 ORTHO05D005540 4.6e-221 773.5 2431 34.7
Sed0014897 Sechium edule HOM05D004560 ORTHO05D005540 6.0e-221 773.1 2495 35.8
ATR0753G002 Amborella trichopoda HOM05D004560 ORTHO05D005540 2.3e-220 771.2 2567 34.8
Cc07_g19160 Coffea canephora HOM05D004560 ORTHO05D005540 4.0e-217 760.4 2438 36.4
MSTRG.23750 Avicennia marina HOM05D004560 ORTHO05D005540 8.4e-215 752.7 2505 35.3
DCAR_014074 Daucus carota HOM05D004560 ORTHO05D005540 2.1e-213 748.0 2479 34.7
Sed0025145 Sechium edule HOM05D004560 ORTHO05D005540 5.1e-212 743.4 2513 35.6
EL10Ac4g07947 Beta vulgaris HOM05D004560 ORTHO05D005540 7.3e-211 739.6 2437 35.2
PSO170G6095 Papaver somniferum HOM05D004560 ORTHO05D005540 4.0e-209 733.8 2499 33.3
Lalb_Chr09g0323141 Lupinus albus HOM05D004560 ORTHO05D005540 6.6e-204 716.5 2459 35.5
TAR628G0564 Trochodendron aralioides HOM05D004560 ORTHO05D005540 6.7e-196 689.9 1241 41.3
Lsat_1_v5_gn_2_84180 Lactuca sativa HOM05D004560 ORTHO05D005540 8.7e-196 689.5 2444 33.7
HanXRQChr14g0448241 Helianthus annuus HOM05D004560 ORTHO05D005540 4.3e-195 687.2 2247 34.3
HanXRQChr14g0442851 Helianthus annuus HOM05D004560 ORTHO05D005540 2.9e-183 647.9 2236 33.4
THA.LOC104819234 Tarenaya hassleriana HOM05D004560 ORTHO05D005540 7.1e-182 643.3 2442 33.3
Aa31LG4G18600 Aethionema arabicum HOM05D004560 ORTHO05D005540 2.5e-171 608.2 2434 33.9
AT3G50370 Arabidopsis thaliana HOM05D004560 ORTHO05D005540 1.5e-168 599.0 2198 33.7
AL5G30500 Arabidopsis lyrata HOM05D004560 ORTHO05D005540 1.0e-167 596.3 2245 33.1
HPP92_004113 Vanilla planifolia HOM05D004560 ORTHO05D005540 3.6e-165 587.8 2445 31.0
Sp5g11810 Schrenkiella parvula HOM05D004560 ORTHO05D005540 6.1e-165 587.0 2427 33.1
Carub.0005s1668 Capsella rubella HOM05D004560 ORTHO05D005540 3.8e-159 567.8 2366 32.6
Haze_15408 Corylus avellana HOM05D004560 ORTHO05D005540 2.9e-151 541.6 1883 34.7
SEGI_38337 Sequoiadendron giganteum HOM05D004560 ORTHO05D005540 2.3e-148 531.9 2696 32.0
Migut.N01430 Erythranthe guttata HOM05D004560 ORTHO05D005540 5.2e-148 530.8 2441 32.6
Cpa.g.sc55.157 Carica papaya HOM05D004560 ORTHO05D005540 1.7e-146 525.8 997 41.1
Thhalv10010051m.g Eutrema salsugineum HOM05D004560 ORTHO05D005540 1.0e-140 506.5 2350 30.8
CARHR159850 Cardamine hirsuta HOM05D004560 ORTHO05D005540 4.5e-136 491.1 2297 30.9
Actinidia16495 Actinidia chinensis HOM05D004560 ORTHO05D005540 4.5e-128 464.5 698 47.3
Oeu003960.1 Olea europaea HOM05D004560 ORTHO05D005540 6.1e-125 454.1 1740 32.5
CDE04G1181 Ceratophyllum demersum HOM05D004560 ORTHO05D005540 4.7e-117 427.9 1886 32.0
CDE08G0981 Ceratophyllum demersum HOM05D004560 ORTHO05D005540 6.8e-116 424.1 1773 28.9
BcaB01g00621 Brassica carinata HOM05D004560 ORTHO05D005540 5.8e-115 421.0 2283 30.4
A09p43370 Brassica napus HOM05D004560 ORTHO05D005540 4.1e-113 414.8 2168 30.7
BcaC07g39495 Brassica carinata HOM05D004560 ORTHO05D005540 3.5e-112 411.8 2274 30.0
C08p25410 Brassica napus HOM05D004560 ORTHO05D005540 3.5e-112 411.8 2274 30.0
BraA09t39806Z Brassica rapa HOM05D004560 ORTHO05D005540 8.6e-111 407.1 2176 30.7
BolC8t50162H Brassica oleracea HOM05D004560 ORTHO05D005540 2.8e-109 402.1 2308 29.6
MELO3C007558.2 Cucumis melo HOM05D004560 ORTHO05D005540 1.9e-102 379.4 1684 34.2
Haze_15410 Corylus avellana HOM05D004560 ORTHO05D005540 2.1e-101 375.9 581 46.3
Atru.chr10.1634 Acer truncatum HOM05D004560 ORTHO05D005540 6.0e-88 331.3 1061 36.8
HPP92_004075 Vanilla planifolia HOM05D004560 ORTHO05D005540 2.5e-86 325.9 1199 31.8
PGSC0003DMG400004537 Solanum tuberosum HOM05D004560 ORTHO05D005540 2.1e-85 322.8 461 45.6
Mapoly0121s0051 Marchantia polymorpha HOM05D004560 ORTHO05D005540 3.4e-75 288.9 1378 31.4
TAR628G1123 Trochodendron aralioides HOM05D004560 ORTHO05D005540 1.2e-72 280.4 971 35.8
FAN04G2556 Fragaria x ananassa HOM05D004560 ORTHO05D005540 1.1e-68 267.3 447 42.3
HPP92_004077 Vanilla planifolia HOM05D004560 ORTHO05D005540 1.7e-66 260.0 930 34.8
unitig_736.g22380 Utricularia gibba HOM05D004560 ORTHO05D005540 6.1e-64 251.5 954 31.7
Cpa.g.sc55.158 Carica papaya HOM05D004560 ORTHO05D005540 2.0e-59 236.5 1028 35.1
Pp3c7_3230 Physcomitrium patens HOM05D004560 ORTHO05D005540 1.2e-56 227.3 2790 27.7
Psat2g096520 Pisum sativum HOM05D004560 ORTHO05D005540 6.7e-55 221.5 266 47.4
Actinidia16497 Actinidia chinensis HOM05D004560 ORTHO05D005540 9.7e-54 217.6 944 36.0
unitig_736.g22379 Utricularia gibba HOM05D004560 ORTHO05D005540 1.0e-39 171.0 1343 30.5
unitig_899.g14936 Utricularia gibba HOM05D004560 ORTHO05D005540 1.0e-34 154.5 959 26.9
SHI34246 Sapria himalayana HOM05D004560 ORTHO05D005540 2.5e-33 149.8 1698 27.5
Pp3c11_18520 Physcomitrium patens HOM05D004560 ORTHO05D005540 2.7e-32 146.4 2783 26.0
SHI34241 Sapria himalayana HOM05D000030 ORTHO05D000009 4.7e-32 145.6 340 36.8
Pp3c11_18522 Physcomitrium patens HOM05D004560 ORTHO05D005540 4.0e-31 142.5 2756 25.9
Dinv39858 Davidia involucrata HOM05D004560 ORTHO05D005540 9.8e-30 137.9 511 32.3
SMO340G0113 Selaginella moellendorffii HOM05D004560 ORTHO05D005540 1.1e-25 124.4 2283 24.6
CDE08G0295 Ceratophyllum demersum HOM05D006253 ORTHO05D007666 4.7e-24 119.0 511 29.0
Cpa.g.sc55.156 Carica papaya HOM05D004560 ORTHO05D005540 5.7e-22 112.1 234 38.0
unitig_899.g14938 Utricularia gibba HOM05D004560 ORTHO05D005540 1.1e-20 107.8 317 32.8
RcHm_v2.0_Chr2g0145051 Rosa chinensis HOM05D004560 ORTHO05D005540 2.7e-19 103.2 221 40.7
Rhsim08G0115000 Rhododendron simsii HOM05D000030 ORTHO05D000009 7.7e-19 101.7 83 59.0
RcHm_v2.0_Chr4g0416641 Rosa chinensis HOM05D004560 ORTHO05D005540 1.0e-18 101.3 213 40.8
CDE04G1185 Ceratophyllum demersum HOM05D004560 ORTHO05D005540 2.7e-11 76.6 203 38.4
Psat3g009840 Pisum sativum HOM05D004560 ORTHO05D005540 3.9e-10 72.8 153 37.3
Psat3g009720 Pisum sativum HOM05D003492 ORTHO05D005540 6.6e-10 72.0 139 38.8
Sed0026550 Sechium edule HOM05D004560 ORTHO05D005540 2.3e-07 63.5 436 27.8
unitig_899.g14937 Utricularia gibba HOM05D004560 ORTHO05D005540 8.9e-07 61.6 279 26.2
Psat5g208000 Pisum sativum HOM05D004560 ORTHO05D005540 1.5e-06 60.8 66 45.5
Psat1g018440 Pisum sativum HOM05D004560 ORTHO05D005540 2.0e-06 60.5 71 43.7
AagrBONN_evm.TU.Sc2ySwM_228.1624 Anthoceros agrestis HOM05D004560 ORTHO05D005540 7.5e-06 58.5 2221 25.2


User provided reference genes

Program Settings