Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb018120 Zea mays HOM05D006579 ORTHO05D007783 3.5e-144 515.0 270 100.0
Os03g0374100 Oryza sativa ssp. japonica HOM05D006579 ORTHO05D007783 1.8e-95 353.2 279 71.3
HPP92_026046 Vanilla planifolia HOM05D006579 ORTHO05D007783 4.6e-80 302.0 269 64.3
Gohir.D11G111000 Gossypium hirsutum HOM05D006579 ORTHO05D007783 4.8e-77 292.0 275 61.5
Gorai.007G118800 Gossypium raimondii HOM05D006579 ORTHO05D007783 8.2e-77 291.2 275 61.5
MBI15_g35678_MAGBIO Magnolia biondii HOM05D006579 ORTHO05D007783 1.1e-76 290.8 276 61.2
THA.LOC104825921 Tarenaya hassleriana HOM05D006579 ORTHO05D007783 1.8e-76 290.0 279 60.6
Potri.014G110200 Populus trichocarpa HOM05D006579 ORTHO05D007783 3.1e-76 289.3 273 61.9
Nn8g39570 Nelumbo nucifera HOM05D006579 ORTHO05D007783 1.2e-75 287.3 271 60.9
Duzib138G1509 Durio zibethinus HOM05D006579 ORTHO05D007783 1.5e-75 287.0 277 61.0
COL.COLO4_23096 Corchorus olitorius HOM05D006579 ORTHO05D007783 2.0e-75 286.6 275 61.5
Thecc.01G328000 Theobroma cacao HOM05D006579 ORTHO05D007783 2.0e-75 286.6 275 61.1
Gohir.A11G106100 Gossypium hirsutum HOM05D006579 ORTHO05D007783 2.6e-75 286.2 275 61.1
Carub.0001s0137 Capsella rubella HOM05D006579 ORTHO05D007783 3.4e-75 285.8 278 59.4
Nitab4.5_0001628g0050 Nicotiana tabacum HOM05D006579 ORTHO05D007783 7.7e-75 284.6 290 59.3
CARHR001640 Cardamine hirsuta HOM05D006579 ORTHO05D007783 1.7e-74 283.5 279 59.5
Hund07814 Selenicereus undatus HOM05D006579 ORTHO05D007783 1.1e-73 280.8 276 60.1
PGR042G1939 Punica granatum HOM05D006579 ORTHO05D007783 1.4e-73 280.4 285 59.3
Nitab4.5_0002103g0080 Nicotiana tabacum HOM05D006579 ORTHO05D007783 1.9e-73 280.0 293 56.7
ATR0796G267 Amborella trichopoda HOM05D006579 ORTHO05D007783 3.2e-73 279.3 273 60.1
Cfa004929 Carpinus fangiana HOM05D006579 ORTHO05D007783 9.4e-73 277.7 297 56.6
TWI23G0058 Tripterygium wilfordii HOM05D006579 ORTHO05D007783 1.2e-72 277.3 277 58.8
Ciclev10021552m.g Citrus clementina HOM05D006579 ORTHO05D007783 1.6e-72 276.9 250 64.0
BraA10t42384Z Brassica rapa HOM05D006579 ORTHO05D007783 4.7e-72 275.4 278 59.4
Cc06_g22680 Coffea canephora HOM05D006579 ORTHO05D007783 7.9e-72 274.6 282 57.4
DCAR_018237 Daucus carota HOM05D006579 ORTHO05D007783 7.9e-72 274.6 283 58.0
AL1G11660 Arabidopsis lyrata HOM05D006579 ORTHO05D007783 1.0e-71 274.2 279 58.4
Glyma.02G006400 Glycine max HOM05D006579 ORTHO05D007783 1.0e-71 274.2 282 58.5
HanXRQChr01g0017841 Helianthus annuus HOM05D006579 ORTHO05D007783 1.0e-71 274.2 287 57.1
SalBow3G0048 Salvia bowleyana HOM05D006579 ORTHO05D007783 1.8e-71 273.5 278 58.6
Sabra14G0081200 Salix brachista HOM05D006579 ORTHO05D007783 2.3e-71 273.1 304 54.9
Eucgr.A00989 Eucalyptus grandis HOM05D006579 ORTHO05D007783 3.0e-71 272.7 283 57.6
ECA248G0873 Erigeron canadensis HOM05D006579 ORTHO05D007783 3.9e-71 272.3 287 57.1
BcaC05g24612 Brassica carinata HOM05D006579 ORTHO05D007783 6.7e-71 271.6 279 58.8
C05p01100 Brassica napus HOM05D006579 ORTHO05D007783 6.7e-71 271.6 279 58.8
BolC5t28891H Brassica oleracea HOM05D006579 ORTHO05D007783 8.8e-71 271.2 279 58.8
TAR362G0572 Trochodendron aralioides HOM05D006579 ORTHO05D007783 1.1e-70 270.8 279 58.1
EL10Ac9g20927 Beta vulgaris HOM05D006579 ORTHO05D007783 1.5e-70 270.4 274 56.9
GSVIVG01028219001 Vitis vinifera HOM05D006579 ORTHO05D007783 1.5e-70 270.4 277 59.2
CANSAT25G2874 Cannabis sativa HOM05D006579 ORTHO05D007783 2.6e-70 269.6 290 56.2
Sp1g01410 Schrenkiella parvula HOM05D006579 ORTHO05D007783 2.6e-70 269.6 279 58.1
VMungo0720G0607 Vigna mungo HOM05D006579 ORTHO05D007783 2.6e-70 269.6 253 61.7
Manes.14G164500 Manihot esculenta HOM05D006579 ORTHO05D007783 9.7e-70 267.7 277 59.2
Dinv33186 Davidia involucrata HOM05D006579 ORTHO05D007783 1.3e-69 267.3 286 56.3
Thhalv10008452m.g Eutrema salsugineum HOM05D006579 ORTHO05D007783 1.3e-69 267.3 280 58.6
Lj5g0006855 Lotus japonicus HOM05D006579 ORTHO05D007783 1.3e-69 267.3 285 57.9
Oeu038082.1 Olea europaea HOM05D006579 ORTHO05D007783 1.3e-69 267.3 281 57.7
AT1G02330 Arabidopsis thaliana HOM05D006579 ORTHO05D007783 1.7e-69 266.9 280 57.1
CiPaw.07G127500 Carya illinoinensis HOM05D006579 ORTHO05D007783 2.2e-69 266.5 301 55.1
QL09p037462 Quercus lobata HOM05D006579 ORTHO05D007783 2.2e-69 266.5 273 58.6
Phvul.007G207700 Phaseolus vulgaris HOM05D006579 ORTHO05D007783 3.7e-69 265.8 253 61.3
Ca_10226_v3 Cicer arietinum L. HOM05D006579 ORTHO05D007783 6.3e-69 265.0 280 56.8
Aa31LG1G10170 Aethionema arabicum HOM05D006579 ORTHO05D007783 1.1e-68 264.2 277 58.5
Psat6g157680 Pisum sativum HOM05D006579 ORTHO05D007783 1.1e-68 264.2 284 57.0
arahy.Tifrunner.gnm1.ann1.3317JQ Arachis hypogaea HOM05D006579 ORTHO05D007783 5.3e-68 261.9 252 59.9
arahy.Tifrunner.gnm1.ann1.E1WP71 Arachis hypogaea HOM05D006579 ORTHO05D007783 5.3e-68 261.9 252 59.9
FvH4_1g26040 Fragaria vesca HOM05D006579 ORTHO05D007783 5.3e-68 261.9 279 56.6
FAN19G0998 Fragaria x ananassa HOM05D006579 ORTHO05D007783 5.3e-68 261.9 279 56.6
Glyma.10G140000 Glycine max HOM05D006579 ORTHO05D007783 5.3e-68 261.9 253 60.5
PSO761G0510 Papaver somniferum HOM05D006579 ORTHO05D007783 5.3e-68 261.9 249 61.8
PSO210G5405 Papaver somniferum HOM05D006579 ORTHO05D007783 7.0e-68 261.5 249 61.8
FAN28G1483 Fragaria x ananassa HOM05D006579 ORTHO05D007783 1.2e-67 260.8 275 56.7
Lalb_Chr06g0167181 Lupinus albus HOM05D006579 ORTHO05D007783 1.2e-67 260.8 282 56.0
MD17G1285900 Malus domestica HOM05D006579 ORTHO05D007783 1.2e-67 260.8 316 51.3
Aqoxy2G02395 Aquilegia oxysepala HOM05D006579 ORTHO05D007783 3.5e-67 259.2 286 55.6
CAN.G179.22 Capsicum annuum HOM05D006579 ORTHO05D007783 4.5e-67 258.8 286 55.2
AUR62037602 Chenopodium quinoa HOM05D006579 ORTHO05D007783 4.5e-67 258.8 274 55.1
TPR.G3075 Trifolium pratense HOM05D006579 ORTHO05D007783 4.5e-67 258.8 286 55.9
ClCG01G007260 Citrullus lanatus HOM05D006579 ORTHO05D007783 5.9e-67 258.5 305 52.5
MELO3C005183.2 Cucumis melo HOM05D006579 ORTHO05D007783 5.9e-67 258.5 304 52.3
Medtr1g085470 Medicago truncatula HOM05D006579 ORTHO05D007783 1.7e-66 256.9 253 59.7
Cpa.g.sc57.48 Carica papaya HOM05D006579 ORTHO05D007783 2.9e-66 256.1 277 58.1
Lalb_Chr21g0309921 Lupinus albus HOM05D006579 ORTHO05D007783 2.9e-66 256.1 286 55.2
FAN23G1885 Fragaria x ananassa HOM05D006579 ORTHO05D007783 8.5e-66 254.6 279 55.6
FAN23G2819 Fragaria x ananassa HOM05D006579 ORTHO05D007783 8.5e-66 254.6 279 55.6
Prupe.3G000500 Prunus persica HOM05D006579 ORTHO05D007783 8.5e-66 254.6 307 52.1
Sc12g0008270 Simmondsia chinensis HOM05D006579 ORTHO05D007783 8.5e-66 254.6 274 56.2
Solyc01g068580.4 Solanum lycopersicum HOM05D006579 ORTHO05D007783 8.5e-66 254.6 292 54.1
Sed0009510 Sechium edule HOM05D006579 ORTHO05D007783 1.5e-65 253.8 296 52.4
Sopen01g030530 Solanum pennellii HOM05D006579 ORTHO05D007783 1.9e-65 253.4 289 54.0
Atru.chr5.832 Acer truncatum HOM05D006579 ORTHO05D007783 3.2e-65 252.7 249 60.2
CsaV3_5G018690 Cucumis sativus L. HOM05D006579 ORTHO05D007783 1.6e-64 250.4 304 50.7
Migut.D00005 Erythranthe guttata HOM05D006579 ORTHO05D007783 2.7e-64 249.6 279 54.5
Lsat_1_v5_gn_1_78561 Lactuca sativa HOM05D006579 ORTHO05D007783 4.7e-64 248.8 242 60.7
FAN26G1368 Fragaria x ananassa HOM05D006579 ORTHO05D007783 1.8e-63 246.9 304 51.3
RcHm_v2.0_Chr3g0485501 Rosa chinensis HOM05D006579 ORTHO05D007783 5.2e-63 245.4 302 50.7
Mapoly0012s0210 Marchantia polymorpha HOM05D006579 ORTHO05D007783 1.1e-62 244.2 275 53.1
Peaxi162Scf00309g00059 Petunia axillaris HOM05D006579 ORTHO05D007783 1.5e-62 243.8 204 65.7
Pp3c6_17910 Physcomitrium patens HOM05D006579 ORTHO05D007783 2.6e-62 243.0 269 53.2
CSS0004948 Camellia sinensis var. sinensis HOM05D006579 ORTHO05D007783 5.7e-62 241.9 207 64.7
SGA_v2.0_scaffold417G51243 Striga asiatica HOM05D006579 ORTHO05D007783 2.2e-61 240.0 305 49.5
MSTRG.18055 Avicennia marina HOM05D006579 ORTHO05D007783 3.1e-60 236.1 278 52.5
Pp3c5_5390 Physcomitrium patens HOM05D006579 ORTHO05D007783 7.7e-59 231.5 275 52.4
PGSC0003DMG400000840 Solanum tuberosum HOM05D006579 ORTHO05D007783 7.7e-59 231.5 328 47.6
AagrBONN_evm.TU.Sc2ySwM_117.1030 Anthoceros agrestis HOM05D006579 ORTHO05D007783 5.5e-57 225.3 279 50.5
Actinidia21333 Actinidia chinensis HOM05D006579 ORTHO05D007783 8.0e-56 221.5 263 52.1
Hma1.2p1_1372F.1_g278650 Hydrangea macrophylla HOM05D006579 ORTHO05D007783 1.3e-53 214.2 186 63.4
Ah.01g015750 Amaranthus hybridus HOM05D006579 ORTHO05D007783 3.1e-52 209.5 398 38.2
Rhsim01G0001200 Rhododendron simsii HOM05D006579 ORTHO05D007783 1.6e-51 207.2 179 64.8
unitig_747.g21528 Utricularia gibba HOM05D006579 ORTHO05D007783 2.9e-50 203.0 282 48.2
CSS0018503 Camellia sinensis var. sinensis HOM05D006579 ORTHO05D007783 7.2e-49 198.4 180 62.2
SHI19775 Sapria himalayana HOM05D006579 ORTHO05D007783 9.4e-49 198.0 275 47.6
CBR_g3462 Chara braunii HOM05D006579 ORTHO05D007783 2.3e-47 193.4 225 51.6
HPP92_013492 Vanilla planifolia HOM05D006579 ORTHO05D007783 1.7e-45 187.2 158 64.6
vmacro02350 Vaccinium macrocarpon HOM05D006579 ORTHO05D007783 5.2e-39 165.6 138 66.7
Lju2566A1G36 Lonicera japonica HOM05D006579 ORTHO05D007783 2.4e-36 156.8 159 57.9
SEGI_25815 Sequoiadendron giganteum HOM05D006579 ORTHO05D007783 5.9e-35 152.1 130 65.4
SMO367G0899 Selaginella moellendorffii HOM05D006579 ORTHO05D007783 2.8e-32 143.3 136 58.8
AUR62039016 Chenopodium quinoa HOM05D006579 ORTHO05D007783 4.6e-27 125.9 138 52.2
Haze_05169 Corylus avellana HOM05D006579 ORTHO05D007783 1.1e-25 121.3 162 48.8
HanXRQChr09g0263751 Helianthus annuus HOM05D006579 ORTHO05D007783 1.1e-25 121.3 183 47.0
Cc00_g21250 Coffea canephora HOM05D006579 ORTHO05D007783 5.6e-25 119.0 77 77.9
SEGI_10424 Sequoiadendron giganteum HOM05D006579 ORTHO05D007783 4.9e-21 105.9 140 50.7
COL.COLO4_00282 Corchorus olitorius HOM05D006579 ORTHO05D007783 7.3e-17 92.0 98 58.2
MCO04G420 Micromonas commoda HOM05D006579 ORTHO05D007783 8.9e-15 85.1 188 35.1
Rhsim01G0001100 Rhododendron simsii HOM05D006579 ORTHO05D007783 8.4e-13 78.6 110 50.0
vmacro02349 Vaccinium macrocarpon HOM05D006579 ORTHO05D007783 1.1e-12 78.2 105 48.6
Lju2566A1T42 Lonicera japonica HOM05D006579 ORTHO05D007783 1.2e-06 58.2 103 38.8


User provided reference genes

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