Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb018110 Zea mays HOM05D004539 ORTHO05D005482 7.2e-249 863.6 486 100.0
Zm00001eb394100 Zea mays HOM05D004539 ORTHO05D005482 9.5e-217 756.9 492 90.0
Zm00001eb394110 Zea mays HOM05D004539 ORTHO05D005482 9.5e-217 756.9 492 90.0
Os03g0372700 Oryza sativa ssp. japonica HOM05D004539 ORTHO05D005482 4.3e-177 625.2 501 75.0
TAR629G0090 Trochodendron aralioides HOM05D004539 ORTHO05D005482 3.5e-86 323.2 552 43.7
COL.COLO4_38586 Corchorus olitorius HOM05D004539 ORTHO05D005482 5.1e-85 319.3 529 42.0
Dinv39486 Davidia involucrata HOM05D004539 ORTHO05D005482 1.1e-82 311.6 528 43.2
Glyma.05G023000 Glycine max HOM05D004539 ORTHO05D005482 1.8e-82 310.8 531 42.7
Prupe.1G370700 Prunus persica HOM05D004539 ORTHO05D005482 2.6e-81 307.0 531 41.8
VMungo1215G0403 Vigna mungo HOM05D004539 ORTHO05D005482 9.9e-81 305.1 532 45.1
Glyma.17G076700 Glycine max HOM05D004539 ORTHO05D005482 1.7e-80 304.3 533 45.6
Thecc.04G277100 Theobroma cacao HOM05D004539 ORTHO05D005482 6.4e-80 302.4 532 44.5
CiPaw.08G062700 Carya illinoinensis HOM05D004539 ORTHO05D005482 1.1e-79 301.6 542 44.3
COL.COLO4_16338 Corchorus olitorius HOM05D004539 ORTHO05D005482 1.9e-79 300.8 527 40.2
GSVIVG01009825001 Vitis vinifera HOM05D004539 ORTHO05D005482 1.9e-79 300.8 504 46.0
Phvul.003G186400 Phaseolus vulgaris HOM05D004539 ORTHO05D005482 2.4e-79 300.4 525 44.2
Haze_22584 Corylus avellana HOM05D004539 ORTHO05D005482 9.2e-79 298.5 504 45.4
Manes.05G152500 Manihot esculenta HOM05D004539 ORTHO05D005482 7.8e-78 295.4 542 42.4
Potri.005G234800 Populus trichocarpa HOM05D004539 ORTHO05D005482 7.8e-78 295.4 534 44.6
Cfa013903 Carpinus fangiana HOM05D004539 ORTHO05D005482 1.0e-77 295.0 523 46.3
Hma1.2p1_0773F.1_g216150 Hydrangea macrophylla HOM05D004539 ORTHO05D005482 1.7e-77 294.3 549 41.7
Duzib192G0399 Durio zibethinus HOM05D004539 ORTHO05D005482 2.3e-77 293.9 528 39.0
vmacro21700 Vaccinium macrocarpon HOM05D004539 ORTHO05D005482 3.9e-77 293.1 538 44.6
Rhsim06G0026400 Rhododendron simsii HOM05D004539 ORTHO05D005482 5.1e-77 292.7 535 43.9
Cpa.g.sc147.12 Carica papaya HOM05D004539 ORTHO05D005482 6.6e-77 292.4 543 38.9
Sabra05G0181000 Salix brachista HOM05D004539 ORTHO05D005482 1.1e-76 291.6 544 43.9
TWI60G0405 Tripterygium wilfordii HOM05D004539 ORTHO05D005482 1.1e-76 291.6 544 41.5
Lj1g0010849 Lotus japonicus HOM05D004539 ORTHO05D005482 3.3e-76 290.0 516 42.1
MD15G1017400 Malus domestica HOM05D004539 ORTHO05D005482 3.3e-76 290.0 537 42.3
PGR031G2058 Punica granatum HOM05D004539 ORTHO05D005482 7.3e-76 288.9 541 43.3
Gohir.D07G219000 Gossypium hirsutum HOM05D004539 ORTHO05D005482 1.6e-75 287.7 529 39.1
HPP92_016110 Vanilla planifolia HOM05D004539 ORTHO05D005482 2.1e-75 287.3 555 40.0
Dinv31810 Davidia involucrata HOM05D004539 ORTHO05D005482 2.8e-75 287.0 540 39.1
Nn6g32243 Nelumbo nucifera HOM05D004539 ORTHO05D005482 2.8e-75 287.0 549 40.1
Gorai.001G253500 Gossypium raimondii HOM05D004539 ORTHO05D005482 4.7e-75 286.2 529 38.8
MD08G1018100 Malus domestica HOM05D004539 ORTHO05D005482 4.7e-75 286.2 537 42.3
Gohir.A07G212900 Gossypium hirsutum HOM05D004539 ORTHO05D005482 1.1e-74 285.0 529 39.1
Ca_11952_v3 Cicer arietinum L. HOM05D004539 ORTHO05D005482 1.4e-74 284.6 520 45.0
Cc10_g02110 Coffea canephora HOM05D004539 ORTHO05D005482 1.4e-74 284.6 516 42.2
TAR628G0025 Trochodendron aralioides HOM05D004539 ORTHO05D005482 1.8e-74 284.3 559 40.8
AUR62042221 Chenopodium quinoa HOM05D004539 ORTHO05D005482 2.4e-74 283.9 508 46.3
AUR62034567 Chenopodium quinoa HOM05D004539 ORTHO05D005482 3.1e-74 283.5 508 46.1
Sc02g0002900 Simmondsia chinensis HOM05D004539 ORTHO05D005482 3.1e-74 283.5 509 45.2
Atru.chr13.359 Acer truncatum HOM05D004539 ORTHO05D005482 4.0e-74 283.1 518 43.4
CANSAT54G2989 Cannabis sativa HOM05D004539 ORTHO05D005482 4.0e-74 283.1 536 39.7
Thhalv10010315m.g Eutrema salsugineum HOM05D004539 ORTHO05D005482 4.0e-74 283.1 498 41.8
Ca_22519_v3 Cicer arietinum L. HOM05D004539 ORTHO05D005482 6.9e-74 282.3 525 44.4
ECA232G1826 Erigeron canadensis HOM05D004539 ORTHO05D005482 9.0e-74 282.0 503 42.9
Hund17219 Selenicereus undatus HOM05D004539 ORTHO05D005482 9.0e-74 282.0 528 41.7
ATR0691G247 Amborella trichopoda HOM05D004539 ORTHO05D005482 2.9e-72 276.9 551 37.4
Sabra02G0022100 Salix brachista HOM05D004539 ORTHO05D005482 2.9e-72 276.9 533 42.8
Lalb_Chr03g0033831 Lupinus albus HOM05D004539 ORTHO05D005482 3.8e-72 276.6 506 42.5
THA.LOC104813189 Tarenaya hassleriana HOM05D004539 ORTHO05D005482 4.9e-72 276.2 510 41.8
Nitab4.5_0012730g0010 Nicotiana tabacum HOM05D004539 ORTHO05D005482 6.4e-72 275.8 515 43.7
Lj2g0012026 Lotus japonicus HOM05D004539 ORTHO05D005482 8.4e-72 275.4 520 41.9
Sed0008828 Sechium edule HOM05D004539 ORTHO05D005482 1.1e-71 275.0 537 42.8
Ciclev10004791m.g Citrus clementina HOM05D004539 ORTHO05D005482 1.9e-71 274.2 528 43.4
Psat7g263720 Pisum sativum HOM05D004539 ORTHO05D005482 1.9e-71 274.2 521 45.7
Hund26867 Selenicereus undatus HOM05D004539 ORTHO05D005482 2.4e-71 273.9 508 40.0
Sed0017053 Sechium edule HOM05D004539 ORTHO05D005482 3.2e-71 273.5 535 43.4
EL10Ac1g00555 Beta vulgaris HOM05D004539 ORTHO05D005482 5.4e-71 272.7 496 46.2
AUR62014430 Chenopodium quinoa HOM05D004539 ORTHO05D005482 7.1e-71 272.3 507 45.0
Sp5g12110 Schrenkiella parvula HOM05D004539 ORTHO05D005482 2.7e-70 270.4 504 43.1
DCAR_013849 Daucus carota HOM05D004539 ORTHO05D005482 3.5e-70 270.0 532 39.7
Aa31LG4G18400 Aethionema arabicum HOM05D004539 ORTHO05D005482 6.0e-70 269.2 503 45.1
Ciclev10011488m.g Citrus clementina HOM05D004539 ORTHO05D005482 7.8e-70 268.9 508 44.5
arahy.Tifrunner.gnm1.ann1.D3BLAG Arachis hypogaea HOM05D004539 ORTHO05D005482 2.3e-69 267.3 549 40.4
MSTRG.25219 Avicennia marina HOM05D004539 ORTHO05D005482 2.3e-69 267.3 523 39.4
BraA03t13876Z Brassica rapa HOM05D004539 ORTHO05D005482 3.0e-69 266.9 495 44.6
A03p47640 Brassica napus HOM05D004539 ORTHO05D005482 5.1e-69 266.2 492 43.7
Lj4A486G10 Lonicera japonica HOM05D004539 ORTHO05D005482 5.1e-69 266.2 587 37.8
BcaC06g33116 Brassica carinata HOM05D004539 ORTHO05D005482 6.6e-69 265.8 504 43.8
unitig_578.g16661 Utricularia gibba HOM05D004539 ORTHO05D005482 6.6e-69 265.8 508 39.0
CAN.G851.13 Capsicum annuum HOM05D004539 ORTHO05D005482 8.7e-69 265.4 525 45.0
BcaC06g33276 Brassica carinata HOM05D004539 ORTHO05D005482 1.5e-68 264.6 506 43.7
C07p45610 Brassica napus HOM05D004539 ORTHO05D005482 1.5e-68 264.6 506 43.7
BolC7t45082H Brassica oleracea HOM05D004539 ORTHO05D005482 1.5e-68 264.6 498 44.4
Cpa.g.sc140.19 Carica papaya HOM05D004539 ORTHO05D005482 2.5e-68 263.8 545 40.4
Aqoxy7G01402 Aquilegia oxysepala HOM05D004539 ORTHO05D005482 4.3e-68 263.1 479 41.5
SalBow6G1219 Salvia bowleyana HOM05D004539 ORTHO05D005482 4.3e-68 263.1 517 40.6
CsaV3_3G001200 Cucumis sativus L. HOM05D004539 ORTHO05D005482 1.6e-67 261.2 539 42.5
SGA_v2.0_scaffold4G01895 Striga asiatica HOM05D004539 ORTHO05D005482 1.6e-67 261.2 525 39.0
SGA_v2.0_scaffold92G28288 Striga asiatica HOM05D004539 ORTHO05D005482 8.1e-67 258.8 525 38.9
Lsat_1_v5_gn_4_116341 Lactuca sativa HOM05D004539 ORTHO05D005482 1.8e-66 257.7 535 38.7
Carub.0005s1635 Capsella rubella HOM05D004539 ORTHO05D005482 2.4e-66 257.3 494 41.9
Lj4C484T3 Lonicera japonica HOM05D004539 ORTHO05D005482 3.1e-66 256.9 489 38.2
PSO675G8916 Papaver somniferum HOM05D004539 ORTHO05D005482 3.1e-66 256.9 524 41.4
AT3G49990 Arabidopsis thaliana HOM05D004539 ORTHO05D005482 1.2e-65 255.0 495 40.4
Migut.C00791 Erythranthe guttata HOM05D004539 ORTHO05D005482 4.5e-65 253.1 498 38.4
CDE12G0120 Ceratophyllum demersum HOM05D004539 ORTHO05D005482 9.9e-65 251.9 568 35.0
MELO3C013810.2 Cucumis melo HOM05D004539 ORTHO05D005482 3.8e-64 250.0 547 39.9
Oeu036929.3 Olea europaea HOM05D004539 ORTHO05D005482 3.8e-64 250.0 543 37.8
PSO541G3108 Papaver somniferum HOM05D004539 ORTHO05D005482 8.4e-64 248.8 523 42.1
ClCG05G018590 Citrullus lanatus HOM05D004539 ORTHO05D005482 1.1e-63 248.4 623 37.7
SEGI_17236 Sequoiadendron giganteum HOM05D004539 ORTHO05D005482 1.4e-63 248.1 577 34.7
CARHR159060 Cardamine hirsuta HOM05D004539 ORTHO05D005482 3.2e-63 246.9 495 40.0
RcHm_v2.0_Chr6g0302141 Rosa chinensis HOM05D004539 ORTHO05D005482 7.1e-63 245.7 515 42.3
AL5G30050 Arabidopsis lyrata HOM05D004539 ORTHO05D005482 1.2e-62 245.0 504 36.5
Medtr4g022890 Medicago truncatula HOM05D004539 ORTHO05D005482 1.2e-62 245.0 526 43.3
TPR.G5561 Trifolium pratense HOM05D004539 ORTHO05D005482 1.6e-62 244.6 527 41.6
MBI05_g04844_MAGBIO Magnolia biondii HOM05D004539 ORTHO05D005482 2.1e-62 244.2 635 33.5
Peaxi162Scf00287g00122 Petunia axillaris HOM05D004539 ORTHO05D005482 2.1e-62 244.2 517 43.3
Solyc04g081030.3 Solanum lycopersicum HOM05D004539 ORTHO05D005482 7.9e-62 242.3 466 38.8
FvH4_2g39030 Fragaria vesca HOM05D004539 ORTHO05D005482 1.3e-61 241.5 518 42.5
arahy.Tifrunner.gnm1.ann1.ME0SR7 Arachis hypogaea HOM05D004539 ORTHO05D005482 1.8e-61 241.1 542 37.5
Sopen04g034650 Solanum pennellii HOM05D004539 ORTHO05D005482 3.0e-61 240.4 467 39.8
Actinidia29798 Actinidia chinensis HOM05D004539 ORTHO05D005482 9.6e-60 235.3 532 38.9
Ah.02g124950 Amaranthus hybridus HOM05D004539 ORTHO05D005482 9.6e-60 235.3 505 42.0
FAN15G3183 Fragaria x ananassa HOM05D004539 ORTHO05D005482 2.1e-59 234.2 523 41.7
FAN20G1687 Fragaria x ananassa HOM05D004539 ORTHO05D005482 1.1e-58 231.9 523 40.7
FAN27G2077 Fragaria x ananassa HOM05D004539 ORTHO05D005482 4.0e-58 229.9 522 42.1
Oeu030391.1 Olea europaea HOM05D004539 ORTHO05D005482 1.2e-57 228.4 464 41.8
PGSC0003DMG400003712 Solanum tuberosum HOM05D004539 ORTHO05D005482 4.9e-56 223.0 506 37.2
HanXRQChr09g0269371 Helianthus annuus HOM05D004539 ORTHO05D005482 4.2e-55 219.9 409 41.1
Zm00001eb328540 Zea mays HOM05D004539 ORTHO05D005482 1.2e-54 218.4 423 40.2
Pp3c26_3100 Physcomitrium patens HOM05D004539 ORTHO05D005482 2.1e-46 191.0 453 35.8
CAN.G851.15 Capsicum annuum HOM05D004539 ORTHO05D005482 2.7e-46 190.7 359 40.9
Os07g0634300 Oryza sativa ssp. japonica HOM05D004539 ORTHO05D005482 1.4e-42 178.3 217 52.5
Mapoly0079s0035 Marchantia polymorpha HOM05D004539 ORTHO05D005482 1.5e-41 174.9 590 31.5
FvH4_7g07450 Fragaria vesca HOM05D004539 ORTHO05D005482 2.5e-39 167.5 392 38.0
QL02p010726 Quercus lobata HOM05D004539 ORTHO05D005482 7.9e-38 162.5 288 42.4
Lj4C792T1 Lonicera japonica HOM05D004539 ORTHO05D005482 5.1e-37 159.8 517 32.9
SEGI_09517 Sequoiadendron giganteum HOM05D004539 ORTHO05D005482 8.8e-37 159.1 422 32.5
Eucgr.E04075 Eucalyptus grandis HOM05D004539 ORTHO05D005482 1.1e-36 158.7 316 40.8
FAN10G3704 Fragaria x ananassa HOM05D004539 ORTHO05D005482 1.3e-35 155.2 397 38.8
Cpa.g.sc1191.1 Carica papaya HOM05D004539 ORTHO05D005482 3.4e-33 147.1 286 41.3
AagrBONN_evm.TU.Sc2ySwM_344.1857 Anthoceros agrestis HOM05D004539 ORTHO05D005482 6.5e-32 142.9 434 32.5
CDE04G1317 Ceratophyllum demersum HOM05D004539 ORTHO05D009003 1.8e-29 134.8 478 32.0
CBR_g23809 Chara braunii HOM05D004539 ORTHO05D005482 7.4e-28 129.4 486 28.8
QL02p010735 Quercus lobata HOM05D004539 ORTHO05D005482 2.2e-27 127.9 259 44.8
TAR628G0156 Trochodendron aralioides HOM05D004539 ORTHO05D005482 1.4e-26 125.2 158 48.1
FAN01G2597 Fragaria x ananassa HOM05D004539 ORTHO05D005482 7.2e-23 112.8 210 44.8
Nitab4.5_0006718g0010 Nicotiana tabacum HOM05D004539 ORTHO05D005482 2.1e-22 111.3 177 44.1
FAN06G2453 Fragaria x ananassa HOM05D004539 ORTHO05D005482 6.1e-22 109.8 176 47.2
FAN22G0834 Fragaria x ananassa HOM05D004539 ORTHO05D005482 6.7e-21 106.3 268 34.7
SHI27908 Sapria himalayana HOM05D004539 ORTHO05D005482 1.7e-19 101.7 216 37.5
AagrBONN_evm.TU.Sc2ySwM_344.3799 Anthoceros agrestis HOM05D004539 ORTHO05D005482 4.5e-17 93.6 434 26.3
AagrBONN_evm.TU.Sc2ySwM_344.1880 Anthoceros agrestis HOM05D004539 ORTHO05D005482 9.4e-15 85.9 210 32.9
FAN05G0730 Fragaria x ananassa HOM05D000664 ORTHO05D000491 8.8e-13 79.3 102 49.0
SMO367G1003 Selaginella moellendorffii HOM05D004539 ORTHO05D005482 5.3e-10 70.1 205 29.8
Rhsim06G0017000 Rhododendron simsii HOM05D004539 ORTHO05D005482 1.7e-08 65.1 94 47.9
BcaB05g23177 Brassica carinata HOM05D004539 ORTHO05D005482 2.9e-08 64.3 89 46.1
MELO3C004859.2 Cucumis melo HOM05D004539 ORTHO05D005482 2.9e-08 64.3 92 44.6
PRCOL_00001157 Prasinoderma coloniale HOM05D004539 ORTHO05D005482 2.9e-08 64.3 355 27.6
MELO3C014949.2 Cucumis melo HOM05D004539 ORTHO05D005482 1.5e-07 62.0 122 36.9
Rhsim06G0016800 Rhododendron simsii HOM05D004539 ORTHO05D005482 1.9e-07 61.6 128 33.6
Potri.002G028100 Populus trichocarpa HOM05D004539 ORTHO05D005482 7.2e-07 59.7 123 40.7


User provided reference genes

Program Settings