Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb017690 Zea mays HOM05D007069 ORTHO05D043501 3.1e-50 201.4 98 100.0
Os03g0363200 Oryza sativa ssp. japonica HOM05D007069 ORTHO05D008964 9.7e-28 126.7 98 66.3
CiPaw.13G035300 Carya illinoinensis HOM05D007069 ORTHO05D008964 1.6e-14 82.8 50 74.0
arahy.Tifrunner.gnm1.ann1.E8SXRQ Arachis hypogaea HOM05D007069 ORTHO05D008964 2.7e-14 82.0 57 66.7
Duzib128G2015 Durio zibethinus HOM05D007069 ORTHO05D008964 2.7e-14 82.0 69 56.5
A03p01720 Brassica napus HOM05D007069 ORTHO05D008964 3.6e-14 81.6 55 70.9
CSS0048393 Camellia sinensis var. sinensis HOM05D007069 ORTHO05D008964 3.6e-14 81.6 56 66.1
GSVIVG01034678001 Vitis vinifera HOM05D007069 ORTHO05D008964 3.6e-14 81.6 57 66.7
CANSAT56G3057 Cannabis sativa HOM05D007069 ORTHO05D008964 4.7e-14 81.3 56 66.1
CARHR208750 Cardamine hirsuta HOM05D007069 ORTHO05D008964 4.7e-14 81.3 72 63.9
AT5G04520 Arabidopsis thaliana HOM05D007069 ORTHO05D008964 6.1e-14 80.9 54 72.2
BcaB01g05911 Brassica carinata HOM05D007069 ORTHO05D008964 6.1e-14 80.9 54 70.4
C03p02120 Brassica napus HOM05D007069 ORTHO05D008964 6.1e-14 80.9 54 70.4
BolC3t12764H Brassica oleracea HOM05D007069 ORTHO05D008964 6.1e-14 80.9 54 70.4
Carub.0006s0346 Capsella rubella HOM05D007069 ORTHO05D008964 6.1e-14 80.9 51 76.5
DCAR_019046 Daucus carota HOM05D007069 ORTHO05D008964 6.1e-14 80.9 71 59.2
Prupe.2G205100 Prunus persica HOM05D007069 ORTHO05D008964 6.1e-14 80.9 49 73.5
BcaNung05855 Brassica carinata HOM05D007069 ORTHO05D008964 8.0e-14 80.5 46 78.3
BraA03t09547Z Brassica rapa HOM05D007069 ORTHO05D008964 8.0e-14 80.5 46 78.3
RcHm_v2.0_Chr1g0362011 Rosa chinensis HOM05D007069 ORTHO05D008964 8.0e-14 80.5 47 76.6
Atru.chr12.946 Acer truncatum HOM05D007069 ORTHO05D008964 1.0e-13 80.1 63 60.3
CSS0039280 Camellia sinensis var. sinensis HOM05D007069 ORTHO05D008964 1.0e-13 80.1 56 64.3
Haze_02639 Corylus avellana HOM05D007069 ORTHO05D008964 1.0e-13 80.1 46 78.3
TWI38G0334 Tripterygium wilfordii HOM05D007069 ORTHO05D008964 1.0e-13 80.1 47 76.6
Actinidia18564 Actinidia chinensis HOM05D007069 ORTHO05D008964 1.4e-13 79.7 49 75.5
FvH4_7g18310 Fragaria vesca HOM05D007069 ORTHO05D008964 1.4e-13 79.7 53 69.8
FAN06G0840 Fragaria x ananassa HOM05D007069 ORTHO05D008964 1.4e-13 79.7 53 69.8
FAN06G2644 Fragaria x ananassa HOM05D007069 ORTHO05D008964 1.4e-13 79.7 53 69.8
Aqoxy116s003 Aquilegia oxysepala HOM05D007069 ORTHO05D008964 1.8e-13 79.3 73 53.4
Aqoxy1G00988 Aquilegia oxysepala HOM05D007069 ORTHO05D008964 1.8e-13 79.3 73 53.4
Thhalv10014252m.g Eutrema salsugineum HOM05D007069 ORTHO05D008964 1.8e-13 79.3 54 70.4
QL04p040528 Quercus lobata HOM05D007069 ORTHO05D008964 1.8e-13 79.3 50 74.0
Sp6g38230 Schrenkiella parvula HOM05D007069 ORTHO05D008964 1.8e-13 79.3 46 76.1
Aa31LG11G5390 Aethionema arabicum HOM05D007069 ORTHO05D008964 3.0e-13 78.6 46 76.1
AL6G14160 Arabidopsis lyrata HOM05D007069 ORTHO05D008964 3.0e-13 78.6 52 73.1
Cfa011205 Carpinus fangiana HOM05D007069 ORTHO05D008964 3.0e-13 78.6 46 76.1
ClCG08G008010 Citrullus lanatus HOM05D007069 ORTHO05D008964 3.0e-13 78.6 71 53.5
FAN10G1338 Fragaria x ananassa HOM05D007069 ORTHO05D008964 3.0e-13 78.6 53 67.9
FAN10G1527 Fragaria x ananassa HOM05D007069 ORTHO05D008964 3.0e-13 78.6 53 67.9
Haze_02638 Corylus avellana HOM05D007069 ORTHO05D008964 4.0e-13 78.2 46 76.1
FAN01G0014 Fragaria x ananassa HOM05D007069 ORTHO05D008964 4.0e-13 78.2 47 74.5
FAN03G0256 Fragaria x ananassa HOM05D007069 ORTHO05D008964 4.0e-13 78.2 53 67.9
PGR142G3703 Punica granatum HOM05D007069 ORTHO05D008964 4.0e-13 78.2 46 76.1
Hund24557 Selenicereus undatus HOM05D007069 ORTHO05D008964 4.0e-13 78.2 47 74.5
MELO3C019873.2 Cucumis melo HOM05D007069 ORTHO05D008964 5.2e-13 77.8 52 67.3
Lj2A26T31 Lonicera japonica HOM05D007069 ORTHO05D008964 6.8e-13 77.4 50 66.0
Potri.010G233000 Populus trichocarpa HOM05D007069 ORTHO05D008964 6.8e-13 77.4 75 58.7
Sabra10G0180700 Salix brachista HOM05D007069 ORTHO05D008964 6.8e-13 77.4 45 77.8
arahy.Tifrunner.gnm1.ann1.CMRY8U Arachis hypogaea HOM05D007069 ORTHO05D008964 8.8e-13 77.0 64 56.2
EL10Ac4g08626 Beta vulgaris HOM05D007069 ORTHO05D008964 8.8e-13 77.0 46 76.1
Ciclev10032023m.g Citrus clementina HOM05D007069 ORTHO05D008964 8.8e-13 77.0 52 71.2
COL.COLO4_08134 Corchorus olitorius HOM05D007069 ORTHO05D008964 8.8e-13 77.0 68 57.4
Lalb_Chr08g0240401 Lupinus albus HOM05D007069 ORTHO05D008964 8.8e-13 77.0 69 53.6
Manes.07G092500 Manihot esculenta HOM05D007069 ORTHO05D008964 8.8e-13 77.0 62 59.7
Nn6g35096 Nelumbo nucifera HOM05D007069 ORTHO05D008964 8.8e-13 77.0 47 72.3
HanXRQChr14g0456251 Helianthus annuus HOM05D007069 ORTHO05D008964 1.2e-12 76.6 49 67.3
Oeu026554.1 Olea europaea HOM05D007069 ORTHO05D008964 1.2e-12 76.6 59 57.6
Cpa.g.sc128.58 Carica papaya HOM05D007069 ORTHO05D008964 1.5e-12 76.3 50 68.0
Dinv20852 Davidia involucrata HOM05D007069 ORTHO05D008964 1.5e-12 76.3 47 76.6
Lsat_1_v5_gn_2_102980 Lactuca sativa HOM05D007069 ORTHO05D008964 1.5e-12 76.3 43 76.7
PSO063G0917 Papaver somniferum HOM05D007069 ORTHO05D008964 1.5e-12 76.3 45 73.3
Phvul.009G055000 Phaseolus vulgaris HOM05D007069 ORTHO05D008964 1.5e-12 76.3 54 68.5
HanXRQChr17g0558031 Helianthus annuus HOM05D007069 ORTHO05D008964 2.0e-12 75.9 56 60.7
Eucgr.G02722 Eucalyptus grandis HOM05D007069 ORTHO05D008964 2.6e-12 75.5 44 72.7
Gohir.A10G199500 Gossypium hirsutum HOM05D007069 ORTHO05D008964 2.6e-12 75.5 64 57.8
Lj1g0010075 Lotus japonicus HOM05D007069 ORTHO05D008964 2.6e-12 75.5 47 74.5
Sed0009885 Sechium edule HOM05D007069 ORTHO05D008964 2.6e-12 75.5 48 70.8
vmacro07213 Vaccinium macrocarpon HOM05D007069 ORTHO05D008964 2.6e-12 75.5 52 69.2
arahy.Tifrunner.gnm1.ann1.HMBD7E Arachis hypogaea HOM05D000072 ORTHO05D000026 3.4e-12 75.1 57 59.6
CAN.G135.54 Capsicum annuum HOM05D007069 ORTHO05D008964 3.4e-12 75.1 43 76.7
Cc02_g10350 Coffea canephora HOM05D007069 ORTHO05D008964 3.4e-12 75.1 57 61.4
HanXRQChr17g0558021 Helianthus annuus HOM05D007069 ORTHO05D008964 3.4e-12 75.1 56 60.7
Medtr3g091130 Medicago truncatula HOM05D007069 ORTHO05D008964 3.4e-12 75.1 55 63.6
Solyc11g007710.2 Solanum lycopersicum HOM05D007069 ORTHO05D008964 3.4e-12 75.1 43 76.7
Sopen11g003570 Solanum pennellii HOM05D007069 ORTHO05D008964 3.4e-12 75.1 43 76.7
PGSC0003DMG400027322 Solanum tuberosum HOM05D007069 ORTHO05D008964 3.4e-12 75.1 43 76.7
MSTRG.27516 Avicennia marina HOM05D007069 ORTHO05D008964 4.4e-12 74.7 56 58.9
CsaV3_2G032880 Cucumis sativus L. HOM05D007069 ORTHO05D008964 4.4e-12 74.7 51 66.7
TPR.G17302 Trifolium pratense HOM05D007069 ORTHO05D008964 4.4e-12 74.7 57 61.4
AUR62043787 Chenopodium quinoa HOM05D007069 ORTHO05D008964 5.7e-12 74.3 46 69.6
Nitab4.5_0003408g0040 Nicotiana tabacum HOM05D007069 ORTHO05D008964 5.7e-12 74.3 65 55.4
Peaxi162Scf00398g00714 Petunia axillaris HOM05D007069 ORTHO05D008964 5.7e-12 74.3 52 67.3
Ca_16690_v3 Cicer arietinum L. HOM05D007069 ORTHO05D008964 7.5e-12 73.9 55 61.8
Psat7g247440 Pisum sativum HOM05D007069 ORTHO05D008964 7.5e-12 73.9 45 75.6
Ah.06g187240 Amaranthus hybridus HOM05D007069 ORTHO05D008964 9.8e-12 73.6 43 76.7
SGA_v2.0_scaffold62G21354 Striga asiatica HOM05D007069 ORTHO05D008964 9.8e-12 73.6 71 50.7
THA.LOC104826966 Tarenaya hassleriana HOM05D007069 ORTHO05D008964 9.8e-12 73.6 45 68.9
CDE06G2018 Ceratophyllum demersum HOM05D007069 ORTHO05D008964 1.7e-11 72.8 46 63.0
Glyma.06G126900 Glycine max HOM05D007069 ORTHO05D008964 1.7e-11 72.8 46 71.7
Migut.F00922 Erythranthe guttata HOM05D007069 ORTHO05D008964 2.2e-11 72.4 48 68.8
Nitab4.5_0000593g0060 Nicotiana tabacum HOM05D007069 ORTHO05D008964 2.8e-11 72.0 47 68.1
Rhsim03G0110200 Rhododendron simsii HOM05D007069 ORTHO05D008964 4.8e-11 71.2 52 61.5
SalBow4G0969 Salvia bowleyana HOM05D007069 ORTHO05D008964 4.8e-11 71.2 43 72.1
ECA238G0989 Erigeron canadensis HOM05D007069 ORTHO05D008964 6.3e-11 70.9 43 72.1
unitig_37.g12329 Utricularia gibba HOM05D007069 ORTHO05D008964 3.1e-10 68.6 55 60.0
HPP92_019367 Vanilla planifolia HOM05D007069 ORTHO05D008964 9.1e-10 67.0 46 60.9
MD01G1099600 Malus domestica HOM05D007069 ORTHO05D008964 1.6e-09 66.2 63 52.4
CARHR034630 Cardamine hirsuta HOM05D007069 ORTHO05D043501 2.7e-09 65.5 44 68.2
Pp3c18_11030 Physcomitrium patens HOM05D007069 ORTHO05D008964 2.7e-09 65.5 44 65.9
SMO137G0195 Selaginella moellendorffii HOM05D007069 ORTHO05D008964 1.3e-08 63.2 40 65.0
ATR0820G197 Amborella trichopoda HOM05D007069 ORTHO05D008964 5.0e-08 61.2 42 61.9
MCO16G085 Micromonas commoda HOM05D007069 ORTHO05D008964 7.2e-07 57.4 47 57.4
Cre03.g212753 Chlamydomonas reinhardtii HOM05D007069 ORTHO05D008964 6.1e-06 54.3 36 66.7


User provided reference genes

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