Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb017020 Zea mays HOM05D003167 ORTHO05D023710 4.1e-90 334.7 172 100.0
Zm00001eb345920 Zea mays HOM05D003167 ORTHO05D023710 4.0e-45 185.3 144 71.5
Zm00001eb061170 Zea mays HOM05D003167 ORTHO05D003929 3.4e-44 182.2 97 94.8
Cpa.g.sc5.120 Carica papaya HOM05D003167 ORTHO05D003929 1.1e-37 160.6 97 80.4
MELO3C009413.2 Cucumis melo HOM05D003167 ORTHO05D003929 5.3e-37 158.3 96 81.2
QL07p041296 Quercus lobata HOM05D003167 ORTHO05D003929 6.9e-37 157.9 97 80.4
Atru.chr8.1695 Acer truncatum HOM05D003167 ORTHO05D003929 9.0e-37 157.5 97 80.4
CsaV3_3G036590 Cucumis sativus L. HOM05D003167 ORTHO05D003929 9.0e-37 157.5 97 79.4
Thecc.08G192100 Theobroma cacao HOM05D003167 ORTHO05D003929 1.5e-36 156.8 98 77.6
CiPaw.10G002600 Carya illinoinensis HOM05D003167 ORTHO05D003929 2.0e-36 156.4 97 79.4
Haze_19497 Corylus avellana HOM05D003167 ORTHO05D003929 2.6e-36 156.0 97 79.4
Manes.08G017200 Manihot esculenta HOM05D003167 ORTHO05D003929 2.6e-36 156.0 97 79.4
ClCG10G019590 Citrullus lanatus HOM05D003167 ORTHO05D003929 3.4e-36 155.6 97 79.4
Duzib093G1992 Durio zibethinus HOM05D003167 ORTHO05D003929 3.4e-36 155.6 97 78.4
Sabra06G0093300 Salix brachista HOM05D003167 ORTHO05D003929 4.5e-36 155.2 97 78.4
Lsat_1_v5_gn_2_23140 Lactuca sativa HOM05D003167 ORTHO05D003929 5.8e-36 154.8 97 78.4
DCAR_020795 Daucus carota HOM05D003167 ORTHO05D003929 7.6e-36 154.5 97 78.4
Gohir.D04G106400 Gossypium hirsutum HOM05D003167 ORTHO05D003929 7.6e-36 154.5 97 77.3
Gorai.009G410400 Gossypium raimondii HOM05D003167 ORTHO05D003929 7.6e-36 154.5 97 77.3
Potri.006G118700 Populus trichocarpa HOM05D003167 ORTHO05D003929 7.6e-36 154.5 97 78.4
GSVIVG01033725001 Vitis vinifera HOM05D003167 ORTHO05D003929 7.6e-36 154.5 97 78.4
COL.COLO4_22264 Corchorus olitorius HOM05D003167 ORTHO05D003929 1.0e-35 154.1 97 76.3
THA.LOC104816364 Tarenaya hassleriana HOM05D003167 ORTHO05D003929 1.0e-35 154.1 97 76.3
ATR0724G050 Amborella trichopoda HOM05D003167 ORTHO05D003929 1.7e-35 153.3 97 79.4
Sed0027110 Sechium edule HOM05D003167 ORTHO05D003929 1.7e-35 153.3 97 77.3
CDE04G1328 Ceratophyllum demersum HOM05D003167 ORTHO05D003929 2.2e-35 152.9 97 80.4
MSTRG.21603 Avicennia marina HOM05D003167 ORTHO05D003929 3.8e-35 152.1 137 62.8
CSS0014862 Camellia sinensis var. sinensis HOM05D003167 ORTHO05D003929 3.8e-35 152.1 97 77.3
CSS0043785 Camellia sinensis var. sinensis HOM05D003167 ORTHO05D003929 3.8e-35 152.1 97 77.3
Cfa016494 Carpinus fangiana HOM05D003167 ORTHO05D003929 3.8e-35 152.1 97 77.3
Ciclev10011207m.g Citrus clementina HOM05D003167 ORTHO05D003929 3.8e-35 152.1 97 77.3
Thecc.05G076300 Theobroma cacao HOM05D003167 ORTHO05D003929 3.8e-35 152.1 97 76.3
FAN05G3544 Fragaria x ananassa HOM05D003167 ORTHO05D003929 4.9e-35 151.8 97 75.3
FAN05G3981 Fragaria x ananassa HOM05D003167 ORTHO05D003929 4.9e-35 151.8 97 75.3
FAN05G5009 Fragaria x ananassa HOM05D003167 ORTHO05D003929 4.9e-35 151.8 97 75.3
Gohir.A04G067800 Gossypium hirsutum HOM05D003167 ORTHO05D003929 4.9e-35 151.8 97 76.3
FvH4_6g17312 Fragaria vesca HOM05D003167 ORTHO05D003929 6.5e-35 151.4 97 75.3
Lj3C1008T14 Lonicera japonica HOM05D003167 ORTHO05D003929 6.5e-35 151.4 97 77.3
TPR.G31678 Trifolium pratense HOM05D003167 ORTHO05D003929 6.5e-35 151.4 97 74.2
ECA238G2918 Erigeron canadensis HOM05D003167 ORTHO05D003929 8.4e-35 151.0 97 74.2
arahy.Tifrunner.gnm1.ann1.P92TZX Arachis hypogaea HOM05D003167 ORTHO05D003929 1.1e-34 150.6 97 74.2
arahy.Tifrunner.gnm1.ann1.WY8M22 Arachis hypogaea HOM05D003167 ORTHO05D003929 1.1e-34 150.6 97 74.2
PSO339G0841 Papaver somniferum HOM05D003167 ORTHO05D003929 1.1e-34 150.6 97 77.3
SalBow8G1467 Salvia bowleyana HOM05D003167 ORTHO05D003929 1.1e-34 150.6 97 78.4
SalBow8G3947 Salvia bowleyana HOM05D003167 ORTHO05D003929 1.1e-34 150.6 97 78.4
Migut.G00710 Erythranthe guttata HOM05D003167 ORTHO05D003929 1.4e-34 150.2 97 77.3
FAN02G2003 Fragaria x ananassa HOM05D003167 ORTHO05D003929 1.4e-34 150.2 97 74.2
FAN14G2907 Fragaria x ananassa HOM05D003167 ORTHO05D003929 1.4e-34 150.2 97 74.2
Rhsim03G0085500 Rhododendron simsii HOM05D003167 ORTHO05D003929 1.4e-34 150.2 97 73.2
Actinidia26630 Actinidia chinensis HOM05D003167 ORTHO05D003929 1.9e-34 149.8 97 74.2
Aqoxy1G01021 Aquilegia oxysepala HOM05D003167 ORTHO05D003929 1.9e-34 149.8 97 76.3
Dinv35839 Davidia involucrata HOM05D003167 ORTHO05D003929 2.5e-34 149.4 97 75.3
Peaxi162Scf00732g00028 Petunia axillaris HOM05D003167 ORTHO05D003929 2.5e-34 149.4 97 77.3
RcHm_v2.0_Chr3g0471451 Rosa chinensis HOM05D003167 ORTHO05D003929 2.5e-34 149.4 97 73.2
Os03g0800100 Oryza sativa ssp. japonica HOM05D003167 ORTHO05D003929 3.2e-34 149.1 83 88.0
Hma1.2p1_0564F.1_g179130 Hydrangea macrophylla HOM05D003167 ORTHO05D003929 4.2e-34 148.7 97 75.3
PGR142G4079 Punica granatum HOM05D003167 ORTHO05D003929 4.2e-34 148.7 98 71.4
Mapoly0001s0156 Marchantia polymorpha HOM05D003167 ORTHO05D003929 5.5e-34 148.3 97 71.1
Hund04098 Selenicereus undatus HOM05D003167 ORTHO05D003929 5.5e-34 148.3 97 74.2
TAR623G0013 Trochodendron aralioides HOM05D003167 ORTHO05D003929 5.5e-34 148.3 97 78.4
vmacro07353 Vaccinium macrocarpon HOM05D003167 ORTHO05D003929 5.5e-34 148.3 97 72.2
Medtr7g102700 Medicago truncatula HOM05D003167 ORTHO05D003929 7.1e-34 147.9 97 73.2
HPP92_017793 Vanilla planifolia HOM05D003167 ORTHO05D003929 7.1e-34 147.9 97 76.3
Aqoxy1G01022 Aquilegia oxysepala HOM05D003167 ORTHO05D003929 9.3e-34 147.5 97 74.2
Eucgr.K02416 Eucalyptus grandis HOM05D003167 ORTHO05D003929 9.3e-34 147.5 98 71.4
SEGI_34935 Sequoiadendron giganteum HOM05D003167 ORTHO05D003929 9.3e-34 147.5 94 76.6
CARHR003250 Cardamine hirsuta HOM05D003167 ORTHO05D003929 1.2e-33 147.1 97 74.2
Carub.0001s0306 Capsella rubella HOM05D003167 ORTHO05D003929 1.6e-33 146.7 97 74.2
Ca_08942_v3 Cicer arietinum L. HOM05D003167 ORTHO05D003929 1.6e-33 146.7 97 73.2
Psat3g037760 Pisum sativum HOM05D003167 ORTHO05D003929 1.6e-33 146.7 97 73.2
AUR62040188 Chenopodium quinoa HOM05D003167 ORTHO05D003929 2.1e-33 146.4 97 71.1
HanXRQChr11g0325191 Helianthus annuus HOM05D003167 ORTHO05D003929 2.1e-33 146.4 97 70.1
MD14G1096200 Malus domestica HOM05D003167 ORTHO05D003929 2.1e-33 146.4 97 70.1
Peaxi162Scf01089g10011 Petunia axillaris HOM05D003167 ORTHO05D003929 2.1e-33 146.4 97 75.3
AL1G13510 Arabidopsis lyrata HOM05D003167 ORTHO05D003929 2.7e-33 146.0 97 73.2
AT1G03910 Arabidopsis thaliana HOM05D003167 ORTHO05D003929 2.7e-33 146.0 97 73.2
A10p02430 Brassica napus HOM05D003167 ORTHO05D003929 2.7e-33 146.0 139 58.3
C05p02250 Brassica napus HOM05D003167 ORTHO05D003929 2.7e-33 146.0 139 58.3
C08p52570 Brassica napus HOM05D003167 ORTHO05D003929 2.7e-33 146.0 139 58.3
BolC5t29003H Brassica oleracea HOM05D003167 ORTHO05D003929 2.7e-33 146.0 139 58.3
Cc00_g14960 Coffea canephora HOM05D003167 ORTHO05D003929 2.7e-33 146.0 97 73.2
Cc10_g12700 Coffea canephora HOM05D003167 ORTHO05D003929 2.7e-33 146.0 97 73.2
Thhalv10006994m.g Eutrema salsugineum HOM05D003167 ORTHO05D003929 2.7e-33 146.0 139 58.3
Sp1g02770 Schrenkiella parvula HOM05D003167 ORTHO05D003929 2.7e-33 146.0 139 58.3
A09p68130 Brassica napus HOM05D003167 ORTHO05D003929 3.5e-33 145.6 139 58.3
BolC8t52784H Brassica oleracea HOM05D003167 ORTHO05D003929 3.5e-33 145.6 139 58.3
BraA09t42148Z Brassica rapa HOM05D003167 ORTHO05D003929 3.5e-33 145.6 97 73.2
CANSAT80G1311 Cannabis sativa HOM05D003167 ORTHO05D003929 3.5e-33 145.6 97 73.2
Nitab4.5_0002027g0020 Nicotiana tabacum HOM05D003167 ORTHO05D003929 3.5e-33 145.6 97 75.3
EL10Ac7g16722 Beta vulgaris HOM05D003167 ORTHO05D003929 6.0e-33 144.8 97 71.1
PSO210G0575 Papaver somniferum HOM05D003167 ORTHO05D003929 6.0e-33 144.8 96 74.0
VMungo1383G0302 Vigna mungo HOM05D003167 ORTHO05D003929 6.0e-33 144.8 97 73.2
Glyma.19G188800 Glycine max HOM05D003167 ORTHO05D003929 7.9e-33 144.4 97 72.2
VMungo0720G2588 Vigna mungo HOM05D003167 ORTHO05D003929 7.9e-33 144.4 97 72.2
Lj1g0005916 Lotus japonicus HOM05D003167 ORTHO05D003929 1.0e-32 144.1 97 74.2
PGSC0003DMG400040194 Solanum tuberosum HOM05D003167 ORTHO05D003929 1.0e-32 144.1 97 74.2
Aa31LG1G9100 Aethionema arabicum HOM05D003167 ORTHO05D003929 1.3e-32 143.7 137 57.7
BcaC05g24486 Brassica carinata HOM05D003167 ORTHO05D003929 1.3e-32 143.7 97 72.2
Glyma.03G188600 Glycine max HOM05D003167 ORTHO05D003929 1.3e-32 143.7 97 72.2
Phvul.001G184000 Phaseolus vulgaris HOM05D003167 ORTHO05D003929 1.3e-32 143.7 97 73.2
CAN.G738.3 Capsicum annuum HOM05D003167 ORTHO05D003929 1.8e-32 143.3 97 75.3
Prupe.7G122300 Prunus persica HOM05D003167 ORTHO05D003929 1.8e-32 143.3 97 72.2
BcaC07g42222 Brassica carinata HOM05D003167 ORTHO05D003929 2.3e-32 142.9 139 57.6
Lalb_Chr25g0288761 Lupinus albus HOM05D003167 ORTHO05D003929 2.3e-32 142.9 97 73.2
AUR62042696 Chenopodium quinoa HOM05D003167 ORTHO05D003929 3.0e-32 142.5 97 70.1
COL.COLO4_17620 Corchorus olitorius HOM05D003167 ORTHO05D003929 3.0e-32 142.5 97 71.1
Solyc10g085410.3 Solanum lycopersicum HOM05D003167 ORTHO05D003929 3.0e-32 142.5 97 74.2
Sopen10g034860 Solanum pennellii HOM05D003167 ORTHO05D003929 3.0e-32 142.5 97 74.2
SGA_v2.0_scaffold312G48279 Striga asiatica HOM05D003167 ORTHO05D003929 3.0e-32 142.5 97 72.2
MD12G1102100 Malus domestica HOM05D003167 ORTHO05D003929 5.1e-32 141.7 97 69.1
Glyma.13G148300 Glycine max HOM05D003167 ORTHO05D003929 8.7e-32 141.0 97 70.1
Lj8P306T56 Lonicera japonica HOM05D003167 ORTHO05D003929 8.7e-32 141.0 98 72.4
Ah.15g091340 Amaranthus hybridus HOM05D003167 ORTHO05D003929 1.9e-31 139.8 96 69.8
Thecc.06G013600 Theobroma cacao HOM05D003167 ORTHO05D003929 1.9e-31 139.8 97 71.1
AagrBONN_evm.TU.Sc2ySwM_344.2239 Anthoceros agrestis HOM05D003167 ORTHO05D003929 7.4e-31 137.9 97 66.0
Lalb_Chr21g0315291 Lupinus albus HOM05D003167 ORTHO05D003929 7.4e-31 137.9 97 70.1
Sc01g0003900 Simmondsia chinensis HOM05D003167 ORTHO05D003929 9.7e-31 137.5 97 69.1
Psat6g078080 Pisum sativum HOM05D003167 ORTHO05D003929 2.8e-30 136.0 97 68.0
CBR_g4119 Chara braunii HOM05D003167 ORTHO05D003929 3.7e-30 135.6 96 66.7
TPR.G27088 Trifolium pratense HOM05D003167 ORTHO05D003929 3.7e-30 135.6 97 68.0
TAR636G1269 Trochodendron aralioides HOM05D003167 ORTHO05D003929 4.8e-30 135.2 97 72.2
Medtr1g061860 Medicago truncatula HOM05D003167 ORTHO05D003929 1.4e-29 133.7 97 67.0
Eucgr.D02277 Eucalyptus grandis HOM05D003167 ORTHO05D003929 3.4e-28 129.0 98 63.3
SHI27742 Sapria himalayana HOM05D003167 ORTHO05D003929 1.3e-27 127.1 97 64.9
Hma1.2p1_0033F.1_g020940 Hydrangea macrophylla HOM05D003167 ORTHO05D023710 6.5e-27 124.8 97 63.9
Pp3c27_420 Physcomitrium patens HOM05D003167 ORTHO05D003929 3.2e-26 122.5 97 59.8
PGR083G2067 Punica granatum HOM05D003167 ORTHO05D003929 7.9e-25 117.9 97 58.8
Nitab4.5_0000883g0030 Nicotiana tabacum HOM05D003167 ORTHO05D023710 1.0e-24 117.5 93 67.7
Carub.0004s1866 Capsella rubella HOM05D003167 ORTHO05D003929 3.9e-24 115.5 97 61.9
CARHR131270 Cardamine hirsuta HOM05D003167 ORTHO05D003929 6.7e-24 114.8 98 59.2
SMO169G0108 Selaginella moellendorffii HOM05D003167 ORTHO05D003929 8.7e-24 114.4 97 54.6
FAN09G3561 Fragaria x ananassa HOM05D003167 ORTHO05D030899 1.5e-23 113.6 97 58.8
AL4G33010 Arabidopsis lyrata HOM05D003167 ORTHO05D003929 4.1e-21 105.5 97 57.7
Lj2g0005784 Lotus japonicus HOM05D003167 ORTHO05D003929 2.5e-18 96.3 100 51.0
FAN28G1035 Fragaria x ananassa HOM05D003167 ORTHO05D003929 3.2e-18 95.9 99 55.6
AUR62018820 Chenopodium quinoa HOM05D003167 ORTHO05D003929 4.2e-18 95.5 101 51.5
FAN26G0867 Fragaria x ananassa HOM05D003167 ORTHO05D003929 5.5e-18 95.1 99 54.5
FAN26G2184 Fragaria x ananassa HOM05D003167 ORTHO05D003929 5.5e-18 95.1 99 54.5
FvH4_1g06450 Fragaria vesca HOM05D003167 ORTHO05D003929 7.2e-18 94.7 99 54.5
FAN19G3088 Fragaria x ananassa HOM05D003167 ORTHO05D003929 7.2e-18 94.7 99 54.5
Aqoxy3G01485 Aquilegia oxysepala HOM05D003167 ORTHO05D003929 1.6e-17 93.6 97 51.5
FAN23G0551 Fragaria x ananassa HOM05D003167 ORTHO05D003929 2.7e-17 92.8 99 54.5
AUR62007182 Chenopodium quinoa HOM05D003167 ORTHO05D003929 3.3e-15 85.9 97 47.4
AUR62007183 Chenopodium quinoa HOM05D003167 ORTHO05D003929 3.3e-15 85.9 97 47.4
RcHm_v2.0_Chr2g0092191 Rosa chinensis HOM05D003167 ORTHO05D003929 3.3e-15 85.9 99 49.5
AT2G36815 Arabidopsis thaliana HOM05D003167 ORTHO05D023710 2.2e-14 83.2 91 53.8
SMO364G0524 Selaginella moellendorffii HOM05D003167 ORTHO05D003929 4.8e-14 82.0 97 44.3
EL10Ac3g06890 Beta vulgaris HOM05D003167 ORTHO05D003929 1.1e-13 80.9 98 45.9
AUR62022073 Chenopodium quinoa HOM05D003167 ORTHO05D003929 1.4e-13 80.5 100 47.0
AUR62022074 Chenopodium quinoa HOM05D003167 ORTHO05D003929 1.4e-13 80.5 100 47.0
Cc04_g07780 Coffea canephora HOM05D003167 ORTHO05D003929 1.5e-12 77.0 95 44.2
unitig_578.g16659 Utricularia gibba HOM05D003167 ORTHO05D003929 1.5e-12 77.0 96 47.9
AUR62009153 Chenopodium quinoa HOM05D003167 ORTHO05D003929 1.1e-10 70.9 100 43.0
RcHm_v2.0_Chr3g0471601 Rosa chinensis HOM05D003167 ORTHO05D030899 9.4e-10 67.8 66 50.0
Hma1.2p1_2996F.1_g331470 Hydrangea macrophylla HOM05D003167 ORTHO05D003929 3.9e-08 62.4 97 38.1
CARHR131200 Cardamine hirsuta HOM05D003167 ORTHO05D003929 1.1e-07 60.8 68 45.6
Atru.chr10.2405 Acer truncatum HOM05D003167 ORTHO05D003929 2.6e-07 59.7 78 48.7
Cre09.g398650 Chlamydomonas reinhardtii HOM05D003167 ORTHO05D003929 5.7e-07 58.5 131 32.8
SMO364G0478 Selaginella moellendorffii HOM05D003167 ORTHO05D379266 1.3e-06 57.4 97 39.2
Os04g0558200 Oryza sativa ssp. japonica HOM05D003167 ORTHO05D003929 1.7e-06 57.0 63 38.1


User provided reference genes

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