Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb016470 Zea mays HOM05D006680 ORTHO05D008206 3.1e-61 238.4 131 100.0
Zm00001eb394930 Zea mays HOM05D006680 ORTHO05D008206 8.6e-48 193.7 112 92.9
Os03g0343800 Oryza sativa ssp. japonica HOM05D006680 ORTHO05D008206 1.1e-47 193.4 136 80.1
Zm00001eb124100 Zea mays HOM05D006680 ORTHO05D008206 1.2e-36 156.8 129 69.0
MBI19_g25353_MAGBIO Magnolia biondii HOM05D006680 ORTHO05D008206 1.3e-27 126.7 115 62.6
Cpa.g.sc16.184 Carica papaya HOM05D006680 ORTHO05D008206 2.4e-26 122.5 109 61.5
Atru.chr4.2870 Acer truncatum HOM05D006680 ORTHO05D008206 4.2e-26 121.7 120 58.3
VMungo1215G2846 Vigna mungo HOM05D006680 ORTHO05D008206 7.1e-26 120.9 123 56.9
Duzib151G0306 Durio zibethinus HOM05D006680 ORTHO05D008206 2.7e-25 119.0 113 58.4
Duzib212G0294 Durio zibethinus HOM05D006680 ORTHO05D008206 3.5e-25 118.6 115 54.8
Ciclev10006049m.g Citrus clementina HOM05D006680 ORTHO05D008206 4.6e-25 118.2 109 58.7
Thecc.04G286300 Theobroma cacao HOM05D006680 ORTHO05D008206 7.9e-25 117.5 115 55.7
A03p34950 Brassica napus HOM05D006680 ORTHO05D008206 1.0e-24 117.1 120 55.0
C03p42530 Brassica napus HOM05D006680 ORTHO05D008206 1.0e-24 117.1 120 55.0
BolC3t16523H Brassica oleracea HOM05D006680 ORTHO05D008206 1.0e-24 117.1 120 55.0
BraA03t12675Z Brassica rapa HOM05D006680 ORTHO05D008206 1.0e-24 117.1 120 55.0
Gohir.A10G164900 Gossypium hirsutum HOM05D006680 ORTHO05D008206 1.0e-24 117.1 115 55.7
Gohir.D10G171100 Gossypium hirsutum HOM05D006680 ORTHO05D008206 1.0e-24 117.1 115 55.7
Gorai.011G191100 Gossypium raimondii HOM05D006680 ORTHO05D008206 1.0e-24 117.1 115 55.7
THA.LOC104818922 Tarenaya hassleriana HOM05D006680 ORTHO05D008206 1.0e-24 117.1 116 56.0
Ah.08g214570 Amaranthus hybridus HOM05D006680 ORTHO05D008206 1.8e-24 116.3 116 56.9
Manes.15G011600 Manihot esculenta HOM05D006680 ORTHO05D008206 1.8e-24 116.3 112 57.1
Aqoxy2G02951 Aquilegia oxysepala HOM05D006680 ORTHO05D008206 3.0e-24 115.5 114 57.0
QL06p009590 Quercus lobata HOM05D006680 ORTHO05D008206 3.0e-24 115.5 115 56.5
ClCG00G005610 Citrullus lanatus HOM05D006680 ORTHO05D008206 5.1e-24 114.8 111 56.8
Dinv29759 Davidia involucrata HOM05D006680 ORTHO05D008206 5.1e-24 114.8 115 57.4
Lsat_1_v5_gn_6_95660 Lactuca sativa HOM05D006680 ORTHO05D008206 5.1e-24 114.8 117 54.7
Prupe.1G134500 Prunus persica HOM05D006680 ORTHO05D008206 5.1e-24 114.8 114 57.9
Ca_21488_v3 Cicer arietinum L. HOM05D006680 ORTHO05D008206 1.1e-23 113.6 117 54.7
Hma1.2p1_1185F.1_g265000 Hydrangea macrophylla HOM05D006680 ORTHO05D008206 1.5e-23 113.2 111 56.8
RcHm_v2.0_Chr4g0422811 Rosa chinensis HOM05D006680 ORTHO05D008206 1.5e-23 113.2 115 58.3
BraA05t22848Z Brassica rapa HOM05D006680 ORTHO05D008206 2.5e-23 112.5 119 55.5
FAN12G3976 Fragaria x ananassa HOM05D006680 ORTHO05D008206 2.5e-23 112.5 113 59.3
Sc19g0005290 Simmondsia chinensis HOM05D006680 ORTHO05D008206 2.5e-23 112.5 115 56.5
Sc19g0005370 Simmondsia chinensis HOM05D006680 ORTHO05D008206 2.5e-23 112.5 115 56.5
FvH4_4g18340 Fragaria vesca HOM05D006680 ORTHO05D008206 3.3e-23 112.1 115 60.9
FAN07G2082 Fragaria x ananassa HOM05D006680 ORTHO05D008206 3.3e-23 112.1 115 60.9
FAN12G3601 Fragaria x ananassa HOM05D006680 ORTHO05D008206 3.3e-23 112.1 115 60.9
FAN17G1034 Fragaria x ananassa HOM05D006680 ORTHO05D008206 3.3e-23 112.1 115 60.9
Sabra10G0008200 Salix brachista HOM05D006680 ORTHO05D008206 3.3e-23 112.1 111 56.8
Lalb_Chr13g0303561 Lupinus albus HOM05D006680 ORTHO05D008206 4.3e-23 111.7 117 54.7
Potri.008G221000 Populus trichocarpa HOM05D006680 ORTHO05D008206 4.3e-23 111.7 113 55.8
CiPaw.01G147500 Carya illinoinensis HOM05D006680 ORTHO05D008206 5.6e-23 111.3 115 55.7
TWI09G0327 Tripterygium wilfordii HOM05D006680 ORTHO05D008206 5.6e-23 111.3 113 54.9
Manes.03G196700 Manihot esculenta HOM05D006680 ORTHO05D008206 7.4e-23 110.9 109 56.0
TAR370G0002 Trochodendron aralioides HOM05D006680 ORTHO05D008206 7.4e-23 110.9 113 54.9
HPP92_000110 Vanilla planifolia HOM05D006680 ORTHO05D008206 7.4e-23 110.9 115 56.5
Glyma.07G246700 Glycine max HOM05D006680 ORTHO05D008206 9.6e-23 110.5 114 53.5
Lalb_Chr07g0177791 Lupinus albus HOM05D006680 ORTHO05D008206 9.6e-23 110.5 117 54.7
Nitab4.5_0003466g0010 Nicotiana tabacum HOM05D006680 ORTHO05D008206 9.6e-23 110.5 117 51.3
PSO210G6323 Papaver somniferum HOM05D006680 ORTHO05D008206 9.6e-23 110.5 119 52.9
CiPaw.02G082300 Carya illinoinensis HOM05D006680 ORTHO05D008206 1.3e-22 110.2 115 53.9
Os07g0673801 Oryza sativa ssp. japonica HOM05D006680 ORTHO05D008206 1.3e-22 110.2 110 60.9
PSO832G1781 Papaver somniferum HOM05D006680 ORTHO05D008206 1.3e-22 110.2 119 52.9
MD13G1167200 Malus domestica HOM05D006680 ORTHO05D008206 1.6e-22 109.8 112 56.2
Nn4g25792 Nelumbo nucifera HOM05D006680 ORTHO05D008206 1.6e-22 109.8 118 53.4
A05p41250 Brassica napus HOM05D006680 ORTHO05D008206 2.1e-22 109.4 121 52.9
BcaC05g29822 Brassica carinata HOM05D006680 ORTHO05D008206 2.8e-22 109.0 122 54.1
BolC5t34701H Brassica oleracea HOM05D006680 ORTHO05D008206 2.8e-22 109.0 122 54.1
DCAR_027070 Daucus carota HOM05D006680 ORTHO05D008206 4.8e-22 108.2 117 53.0
AUR62040379 Chenopodium quinoa HOM05D006680 ORTHO05D008206 8.1e-22 107.5 116 51.7
MBI18_g06870_MAGBIO Magnolia biondii HOM05D006680 ORTHO05D008206 8.1e-22 107.5 115 54.8
AL3G18020 Arabidopsis lyrata HOM05D006680 ORTHO05D008206 1.1e-21 107.1 102 56.9
Nn3g21479 Nelumbo nucifera HOM05D006680 ORTHO05D008206 1.1e-21 107.1 96 61.5
CSS0010580 Camellia sinensis var. sinensis HOM05D006680 ORTHO05D008206 1.4e-21 106.7 117 50.4
CSS0014864 Camellia sinensis var. sinensis HOM05D006680 ORTHO05D008206 1.8e-21 106.3 117 50.4
ECA240G4018 Erigeron canadensis HOM05D006680 ORTHO05D008206 1.8e-21 106.3 114 50.9
Cc03_g01760 Coffea canephora HOM05D006680 ORTHO05D008206 2.4e-21 105.9 116 51.7
Potri.010G013100 Populus trichocarpa HOM05D006680 ORTHO05D008206 4.0e-21 105.1 114 54.4
AT3G06890 Arabidopsis thaliana HOM05D006680 ORTHO05D008206 5.3e-21 104.8 102 55.9
CAN.G129.31 Capsicum annuum HOM05D006680 ORTHO05D008206 5.3e-21 104.8 111 53.2
Oeu001107.1 Olea europaea HOM05D006680 ORTHO05D008206 6.9e-21 104.4 107 55.1
Peaxi162Scf00246g00103 Petunia axillaris HOM05D006680 ORTHO05D008206 9.0e-21 104.0 110 52.7
Sed0015603 Sechium edule HOM05D006680 ORTHO05D008206 1.2e-20 103.6 111 54.1
Sopen01g028370 Solanum pennellii HOM05D006680 ORTHO05D008206 2.0e-20 102.8 111 50.5
CARHR081510 Cardamine hirsuta HOM05D006680 ORTHO05D008206 3.4e-20 102.1 101 55.4
Gohir.A09G238300 Gossypium hirsutum HOM05D006680 ORTHO05D008206 3.4e-20 102.1 115 51.3
Gohir.D09G239200 Gossypium hirsutum HOM05D006680 ORTHO05D008206 3.4e-20 102.1 115 50.4
Gorai.006G261900 Gossypium raimondii HOM05D006680 ORTHO05D008206 3.4e-20 102.1 115 50.4
Medtr4g120020 Medicago truncatula HOM05D006680 ORTHO05D008206 3.4e-20 102.1 116 50.0
Migut.G00148 Erythranthe guttata HOM05D006680 ORTHO05D008206 4.5e-20 101.7 109 56.9
Carub.0003s0642 Capsella rubella HOM05D006680 ORTHO05D008206 5.8e-20 101.3 97 55.7
Nitab4.5_0002761g0070 Nicotiana tabacum HOM05D006680 ORTHO05D008206 5.8e-20 101.3 110 51.8
Oeu063359.1 Olea europaea HOM05D006680 ORTHO05D008206 5.8e-20 101.3 109 53.2
PGR031G3343 Punica granatum HOM05D006680 ORTHO05D008206 7.6e-20 100.9 115 48.7
Solyc12g099500.2 Solanum lycopersicum HOM05D006680 ORTHO05D008206 1.0e-19 100.5 114 50.0
Sopen12g034170 Solanum pennellii HOM05D006680 ORTHO05D008206 1.0e-19 100.5 114 50.0
Thhalv10021931m.g Eutrema salsugineum HOM05D006680 ORTHO05D008206 2.2e-19 99.4 111 50.5
HanXRQChr13g0419971 Helianthus annuus HOM05D006680 ORTHO05D008206 2.9e-19 99.0 114 48.2
PGSC0003DMG400011317 Solanum tuberosum HOM05D006680 ORTHO05D008206 3.8e-19 98.6 111 48.6
MSTRG.3906 Avicennia marina HOM05D006680 ORTHO05D008206 4.9e-19 98.2 115 51.3
Peaxi162Scf00646g00027 Petunia axillaris HOM05D006680 ORTHO05D008206 6.5e-19 97.8 116 50.0
PGSC0003DMG400004705 Solanum tuberosum HOM05D006680 ORTHO05D008206 8.4e-19 97.4 117 49.6
CAN.G484.39 Capsicum annuum HOM05D006680 ORTHO05D008206 1.1e-18 97.1 117 47.0
ATR0796G044 Amborella trichopoda HOM05D006680 ORTHO05D008206 1.4e-18 96.7 114 50.0
Sp3g05850 Schrenkiella parvula HOM05D006680 ORTHO05D008206 1.4e-18 96.7 97 53.6
DCAR_030521 Daucus carota HOM05D006680 ORTHO05D008206 4.2e-18 95.1 112 50.9
Lj4g0016566 Lotus japonicus HOM05D006680 ORTHO05D008206 5.5e-18 94.7 95 53.7
Phvul.003G097003 Phaseolus vulgaris HOM05D006680 ORTHO05D008206 5.5e-18 94.7 95 58.9
Sabra10G0008300 Salix brachista HOM05D006680 ORTHO05D008206 2.1e-17 92.8 111 51.4
SGA_v2.0_scaffold67G22622 Striga asiatica HOM05D006680 ORTHO05D008206 2.1e-17 92.8 109 51.4
TPR.G3164 Trifolium pratense HOM05D006680 ORTHO05D008206 4.6e-17 91.7 95 52.6
DCAR_002469 Daucus carota HOM05D006680 ORTHO05D008206 7.9e-17 90.9 113 48.7
PGR004G0310 Punica granatum HOM05D006680 ORTHO05D008206 7.9e-17 90.9 115 47.0
Psat4g026840 Pisum sativum HOM05D006680 ORTHO05D008206 2.3e-16 89.4 95 51.6
PSO170G5007 Papaver somniferum HOM05D006680 ORTHO05D008206 5.1e-16 88.2 105 53.3
PSO017G4993 Papaver somniferum HOM05D006680 ORTHO05D008206 1.1e-15 87.0 105 52.4
HanXRQChr03g0089341 Helianthus annuus HOM05D006680 ORTHO05D008206 1.9e-15 86.3 115 43.5
CANSAT78G1139 Cannabis sativa HOM05D006680 ORTHO05D008206 2.5e-15 85.9 91 51.6
Thecc.05G268700 Theobroma cacao HOM05D006680 ORTHO05D008206 1.3e-14 83.6 94 50.0
Eucgr.H03932 Eucalyptus grandis HOM05D006680 ORTHO05D008206 4.8e-14 81.6 127 45.7
Thecc.09G272700 Theobroma cacao HOM05D006680 ORTHO05D008206 8.2e-14 80.9 84 53.6
unitig_32.g11869 Utricularia gibba HOM05D006680 ORTHO05D008206 4.1e-13 78.6 110 50.0
Rhsim04G0223700 Rhododendron simsii HOM05D006680 ORTHO05D008206 1.5e-12 76.6 94 51.1
Rhsim09G0007300 Rhododendron simsii HOM05D006680 ORTHO05D008206 1.5e-12 76.6 94 51.1
MD16G1168200 Malus domestica HOM05D006680 ORTHO05D008206 2.2e-11 72.8 116 44.8
TAR633G0386 Trochodendron aralioides HOM05D006680 ORTHO05D008206 4.2e-10 68.6 119 37.8
MELO3C006671.2 Cucumis melo HOM05D006680 ORTHO05D008206 2.5e-07 59.3 47 63.8


User provided reference genes

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