Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb016410 Zea mays HOM05D003565 ORTHO05D003943 9.6e-90 333.6 180 100.0
Os03g0341600 Oryza sativa ssp. japonica HOM05D003565 ORTHO05D003943 2.0e-23 113.2 135 54.1
Zm00001eb016390 Zea mays HOM05D003565 ORTHO05D003943 4.5e-23 112.1 150 48.0
Os03g0342100 Oryza sativa ssp. japonica HOM05D003565 ORTHO05D003943 2.9e-22 109.4 143 49.7
HanXRQChr08g0214541 Helianthus annuus HOM05D003565 ORTHO05D003943 5.0e-14 82.0 138 42.8
Solyc01g066680.3 Solanum lycopersicum HOM05D003565 ORTHO05D003943 6.2e-12 75.1 162 41.4
Sopen01g028300 Solanum pennellii HOM05D003565 ORTHO05D003943 8.0e-12 74.7 159 42.1
PGSC0003DMG400011334 Solanum tuberosum HOM05D003565 ORTHO05D003943 1.1e-11 74.3 140 44.3
MBI18_g24867_MAGBIO Magnolia biondii HOM05D003565 ORTHO05D003943 1.8e-11 73.6 138 42.0
Os07g0674400 Oryza sativa ssp. japonica HOM05D003565 ORTHO05D003943 1.8e-11 73.6 105 49.5
Thhalv10021522m.g Eutrema salsugineum HOM05D003565 ORTHO05D003943 3.1e-11 72.8 118 43.2
CARHR150150 Cardamine hirsuta HOM05D003565 ORTHO05D003943 1.5e-10 70.5 137 38.7
Peaxi162Scf00246g01219 Petunia axillaris HOM05D003565 ORTHO05D003943 5.8e-10 68.6 133 44.4
Zm00001eb111390 Zea mays HOM05D003565 ORTHO05D003943 5.8e-10 68.6 105 47.6
MELO3C006673.2 Cucumis melo HOM05D003565 ORTHO05D003943 9.8e-10 67.8 137 41.6
PGR004G2879 Punica granatum HOM05D003565 ORTHO05D003943 1.3e-09 67.4 135 39.3
CsaV3_3G014750 Cucumis sativus L. HOM05D003565 ORTHO05D003943 2.2e-09 66.6 162 42.0
Migut.O00777 Erythranthe guttata HOM05D003565 ORTHO05D003943 2.2e-09 66.6 141 38.3
CiPaw.02G081300 Carya illinoinensis HOM05D003565 ORTHO05D003943 2.9e-09 66.2 143 42.0
Os07g0674500 Oryza sativa ssp. japonica HOM05D003565 ORTHO05D003943 2.9e-09 66.2 103 49.5
Rhsim02G0008000 Rhododendron simsii HOM05D003565 ORTHO05D003943 2.9e-09 66.2 140 41.4
DCAR_022430 Daucus carota HOM05D003565 ORTHO05D003943 3.7e-09 65.9 143 35.0
CiPaw.02G081400 Carya illinoinensis HOM05D003565 ORTHO05D003943 4.9e-09 65.5 136 40.4
CiPaw.02G081500 Carya illinoinensis HOM05D003565 ORTHO05D003943 4.9e-09 65.5 136 40.4
CAN.G261.3 Capsicum annuum HOM05D003565 ORTHO05D003943 6.4e-09 65.1 156 41.0
ECA240G0767 Erigeron canadensis HOM05D003565 ORTHO05D003943 6.4e-09 65.1 135 40.7
SalBow2G2654 Salvia bowleyana HOM05D003565 ORTHO05D003943 6.4e-09 65.1 139 37.4
HanXRQChr03g0088801 Helianthus annuus HOM05D003565 ORTHO05D003943 8.3e-09 64.7 132 38.6
HanXRQChr08g0214531 Helianthus annuus HOM05D003565 ORTHO05D003943 8.3e-09 64.7 149 38.9
Carub.0003s1639 Capsella rubella HOM05D003565 ORTHO05D003943 1.1e-08 64.3 112 42.9
CARHR091920 Cardamine hirsuta HOM05D003565 ORTHO05D003943 1.1e-08 64.3 131 39.7
Gohir.A10G165200 Gossypium hirsutum HOM05D003565 ORTHO05D003943 1.1e-08 64.3 141 36.9
Actinidia28386 Actinidia chinensis HOM05D003565 ORTHO05D003943 1.4e-08 63.9 144 38.9
SalBow2G0621 Salvia bowleyana HOM05D003565 ORTHO05D003943 1.4e-08 63.9 114 42.1
Cfa015405 Carpinus fangiana HOM05D003565 ORTHO05D003943 1.9e-08 63.5 137 41.6
FAN12G0988 Fragaria x ananassa HOM05D003565 ORTHO05D003943 1.9e-08 63.5 149 40.9
SGA_v2.0_scaffold18G08345 Striga asiatica HOM05D003565 ORTHO05D003943 1.9e-08 63.5 101 44.6
HanXRQChr03g0088811 Helianthus annuus HOM05D003565 ORTHO05D003943 2.4e-08 63.2 108 43.5
HanXRQChr03g0089401 Helianthus annuus HOM05D003565 ORTHO05D003943 2.4e-08 63.2 150 34.7
A01p37210 Brassica napus HOM05D003565 ORTHO05D003943 3.2e-08 62.8 113 38.9
AL3G29580 Arabidopsis lyrata HOM05D003565 ORTHO05D003943 4.1e-08 62.4 114 42.1
CsaV3_UNG044240 Cucumis sativus L. HOM05D003565 ORTHO05D003943 5.4e-08 62.0 99 45.5
Lsat_1_v5_gn_6_95321 Lactuca sativa HOM05D003565 ORTHO05D003943 5.4e-08 62.0 140 42.1
QL06p009754 Quercus lobata HOM05D003565 ORTHO05D003943 5.4e-08 62.0 101 41.6
Haze_01182 Corylus avellana HOM05D003565 ORTHO05D003943 7.0e-08 61.6 135 41.5
QL06p009664 Quercus lobata HOM05D003565 ORTHO05D003943 7.0e-08 61.6 93 43.0
BcaB04g18928 Brassica carinata HOM05D003565 ORTHO05D003943 9.2e-08 61.2 100 44.0
QL06p009790 Quercus lobata HOM05D003565 ORTHO05D003943 9.2e-08 61.2 101 41.6
QL06p009796 Quercus lobata HOM05D003565 ORTHO05D003943 9.2e-08 61.2 101 42.6
CARHR091910 Cardamine hirsuta HOM05D003565 ORTHO05D003943 1.2e-07 60.8 99 44.4
CiPaw.02G058900 Carya illinoinensis HOM05D003565 ORTHO05D003943 1.6e-07 60.5 132 41.7
Psat1g155160 Pisum sativum HOM05D003565 ORTHO05D003943 1.6e-07 60.5 99 42.4
QL06p009778 Quercus lobata HOM05D003565 ORTHO05D003943 1.6e-07 60.5 133 38.3
QL93p0060_0003 Quercus lobata HOM05D003565 ORTHO05D003943 1.6e-07 60.5 133 38.3
RcHm_v2.0_Chr4g0422991 Rosa chinensis HOM05D003565 ORTHO05D003943 1.6e-07 60.5 153 38.6
A01p37230 Brassica napus HOM05D003565 ORTHO05D003943 2.0e-07 60.1 113 39.8
QL06p009717 Quercus lobata HOM05D003565 ORTHO05D003943 2.0e-07 60.1 133 37.6
THA.LOC104820292 Tarenaya hassleriana HOM05D003565 ORTHO05D003943 2.0e-07 60.1 117 38.5
CsaV3_6G023960 Cucumis sativus L. HOM05D000549 ORTHO05D001527 2.7e-07 59.7 99 44.4
FvH4_4g18480 Fragaria vesca HOM05D003565 ORTHO05D003943 2.7e-07 59.7 139 38.8
CiPaw.02G059200 Carya illinoinensis HOM05D003565 ORTHO05D003943 4.6e-07 58.9 132 40.9
MELO3C035189.2 Cucumis melo HOM05D003565 ORTHO05D003943 4.6e-07 58.9 140 34.3
FAN12G1574 Fragaria x ananassa HOM05D003565 ORTHO05D003943 4.6e-07 58.9 139 38.8
HanXRQChr13g0420001 Helianthus annuus HOM05D003565 ORTHO05D003943 4.6e-07 58.9 138 39.9
QL93p0060_0027 Quercus lobata HOM05D003565 ORTHO05D003943 4.6e-07 58.9 133 37.6
FAN12G0358 Fragaria x ananassa HOM05D003565 ORTHO05D003943 6.0e-07 58.5 138 39.1
Lj6g0014140 Lotus japonicus HOM05D003565 ORTHO05D003943 6.0e-07 58.5 137 35.8
PSO210G5566 Papaver somniferum HOM05D003565 ORTHO05D003943 6.0e-07 58.5 133 39.8
PGR004G0277 Punica granatum HOM05D003565 ORTHO05D003943 6.0e-07 58.5 121 37.2
PGR004G2171 Punica granatum HOM05D003565 ORTHO05D003943 6.0e-07 58.5 121 37.2
Glyma.09G043500 Glycine max HOM05D003565 ORTHO05D003943 7.8e-07 58.2 124 39.5
QL06p009701 Quercus lobata HOM05D003565 ORTHO05D003943 7.8e-07 58.2 101 40.6
QL93p0060_0019 Quercus lobata HOM05D003565 ORTHO05D003943 7.8e-07 58.2 101 40.6
Cfa021269 Carpinus fangiana HOM05D003565 ORTHO05D003943 1.0e-06 57.8 128 38.3
FAN12G2280 Fragaria x ananassa HOM05D003565 ORTHO05D003943 1.0e-06 57.8 149 38.9
FAN17G2113 Fragaria x ananassa HOM05D003565 ORTHO05D003943 1.0e-06 57.8 140 38.6
MSTRG.10106 Avicennia marina HOM05D003565 ORTHO05D003943 1.3e-06 57.4 140 38.6
GSVIVG01035140001 Vitis vinifera HOM05D003565 ORTHO05D003943 1.3e-06 57.4 138 39.1
CARHR091930 Cardamine hirsuta HOM05D003565 ORTHO05D003943 1.7e-06 57.0 136 35.3
HanXRQChr03g0089391 Helianthus annuus HOM05D003565 ORTHO05D003943 1.7e-06 57.0 164 35.4
Hma1.2p1_1807F.1_g303350 Hydrangea macrophylla HOM05D003565 ORTHO05D003943 1.7e-06 57.0 141 39.7
Potri.010G012400 Populus trichocarpa HOM05D003565 ORTHO05D003943 1.7e-06 57.0 111 40.5
CARHR150160 Cardamine hirsuta HOM05D003565 ORTHO05D003943 2.3e-06 56.6 136 35.3
Dinv29764 Davidia involucrata HOM05D003565 ORTHO05D003943 2.3e-06 56.6 134 37.3
QL93p0060_0047 Quercus lobata HOM05D003565 ORTHO05D003943 2.3e-06 56.6 101 40.6
AT3G16660 Arabidopsis thaliana HOM05D003565 ORTHO05D003943 3.0e-06 56.2 104 41.3
Cpa.g.sc16.191 Carica papaya HOM05D003565 ORTHO05D003943 3.0e-06 56.2 112 40.2
Gorai.011G191400 Gossypium raimondii HOM05D003565 ORTHO05D003943 3.0e-06 56.2 134 37.3
PSO832G2395 Papaver somniferum HOM05D003565 ORTHO05D003943 3.0e-06 56.2 133 38.3
TPR.G31280 Trifolium pratense HOM05D003565 ORTHO05D003943 3.0e-06 56.2 121 39.7
Medtr2g436350 Medicago truncatula HOM05D003565 ORTHO05D003943 3.9e-06 55.8 159 37.1
Prupe.1G133700 Prunus persica HOM05D003565 ORTHO05D003943 3.9e-06 55.8 116 41.4
vmacro15222 Vaccinium macrocarpon HOM05D003565 ORTHO05D003943 3.9e-06 55.8 137 38.0
Sed0026730 Sechium edule HOM05D003565 ORTHO05D003943 5.0e-06 55.5 99 39.4
CANSAT78G1552 Cannabis sativa HOM05D003565 ORTHO05D003943 6.6e-06 55.1 113 38.1
Aa31LG8G3780 Aethionema arabicum HOM05D003565 ORTHO05D003943 8.6e-06 54.7 103 39.8
Duzib151G1023 Durio zibethinus HOM05D003565 ORTHO05D003943 8.6e-06 54.7 141 39.0


User provided reference genes

Program Settings