Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb016340 Zea mays HOM05D000454 ORTHO05D007090 4.1e-41 171.0 89 100.0
Zm00001eb190350 Zea mays HOM05D000454 ORTHO05D007581 4.1e-17 91.3 97 56.7
Os02g0735700 Oryza sativa ssp. japonica HOM05D000454 ORTHO05D007581 4.5e-16 87.8 97 54.6
Zm00001eb253830 Zea mays HOM05D000454 ORTHO05D007581 5.0e-15 84.3 97 53.6
HPP92_020302 Vanilla planifolia HOM05D000454 ORTHO05D007581 2.3e-12 75.5 54 68.5
Zm00001eb040840 Zea mays HOM05D000454 ORTHO05D445791 5.2e-12 74.3 43 86.0
Zm00001eb195680 Zea mays HOM05D001315 ORTHO05D001618 2.6e-11 72.0 52 71.2
Zm00001eb408300 Zea mays HOM05D005757 ORTHO05D007090 2.6e-11 72.0 52 71.2
Manes.15G134000 Manihot esculenta HOM05D000454 ORTHO05D007581 7.0e-09 63.9 64 54.7
Haze_10883 Corylus avellana HOM05D000454 ORTHO05D007581 2.7e-08 62.0 54 59.3
Potri.008G134500 Populus trichocarpa HOM05D000454 ORTHO05D007581 2.7e-08 62.0 54 57.4
Solyc01g005340.3 Solanum lycopersicum HOM05D000454 ORTHO05D007581 3.5e-08 61.6 54 57.4
Sopen01g001360 Solanum pennellii HOM05D000454 ORTHO05D007581 4.5e-08 61.2 54 57.4
Actinidia12393 Actinidia chinensis HOM05D000454 ORTHO05D007581 5.9e-08 60.8 54 57.4
Actinidia36628 Actinidia chinensis HOM05D000454 ORTHO05D007581 5.9e-08 60.8 54 57.4
Lj4g0012485 Lotus japonicus HOM05D000454 ORTHO05D007581 5.9e-08 60.8 52 59.6
Sabra10G0078000 Salix brachista HOM05D000454 ORTHO05D007581 5.9e-08 60.8 76 50.0
SHI04319 Sapria himalayana HOM05D000454 ORTHO05D007581 5.9e-08 60.8 67 49.3
PGSC0003DMG400019975 Solanum tuberosum HOM05D000454 ORTHO05D007581 5.9e-08 60.8 54 57.4
FvH4_4g33630 Fragaria vesca HOM05D000454 ORTHO05D007581 7.8e-08 60.5 71 52.1
FAN17G1531 Fragaria x ananassa HOM05D000454 ORTHO05D007581 7.8e-08 60.5 69 53.6
FAN12G2722 Fragaria x ananassa HOM05D000454 ORTHO05D007581 1.0e-07 60.1 69 53.6
Atru.chr11.929 Acer truncatum HOM05D000454 ORTHO05D007581 1.3e-07 59.7 54 55.6
Eucgr.G02108 Eucalyptus grandis HOM05D000454 ORTHO05D007581 1.3e-07 59.7 54 59.3
Phvul.002G321000 Phaseolus vulgaris HOM05D000454 ORTHO05D007581 1.3e-07 59.7 61 55.7
RcHm_v2.0_Chr4g0443091 Rosa chinensis HOM05D000454 ORTHO05D007581 1.3e-07 59.7 66 54.5
CiPaw.06G051600 Carya illinoinensis HOM05D000454 ORTHO05D007581 1.7e-07 59.3 54 55.6
arahy.Tifrunner.gnm1.ann1.N2JTHJ Arachis hypogaea HOM05D000454 ORTHO05D007581 2.3e-07 58.9 69 49.3
arahy.Tifrunner.gnm1.ann1.Q6KLHZ Arachis hypogaea HOM05D000454 ORTHO05D007581 2.3e-07 58.9 69 49.3
Cfa015022 Carpinus fangiana HOM05D000454 ORTHO05D007581 2.3e-07 58.9 54 55.6
CiPaw.05G189300 Carya illinoinensis HOM05D000454 ORTHO05D007581 3.9e-07 58.2 54 53.7
Lsat_1_v5_gn_8_46240 Lactuca sativa HOM05D000454 ORTHO05D007581 5.0e-07 57.8 54 53.7
FAN07G1725 Fragaria x ananassa HOM05D000454 ORTHO05D007581 8.6e-07 57.0 54 55.6
Prupe.1G333000 Prunus persica HOM05D000454 ORTHO05D007581 8.6e-07 57.0 54 57.4
VMungo0251G1416 Vigna mungo HOM05D000454 ORTHO05D007581 8.6e-07 57.0 52 53.8
MD13G1020700 Malus domestica HOM05D000454 ORTHO05D007581 1.1e-06 56.6 54 57.4
HPP92_007028 Vanilla planifolia HOM05D000454 ORTHO05D000591 1.1e-06 56.6 52 55.8
HPP92_007073 Vanilla planifolia HOM05D000454 ORTHO05D000591 1.1e-06 56.6 52 55.8
Lalb_Chr09g0330911 Lupinus albus HOM05D000454 ORTHO05D007581 1.5e-06 56.2 52 55.8
Nitab4.5_0005571g0020 Nicotiana tabacum HOM05D000454 ORTHO05D007581 1.5e-06 56.2 54 51.9
vmacro10691 Vaccinium macrocarpon HOM05D000454 ORTHO05D007581 1.5e-06 56.2 54 51.9
Aa31LG2G8210 Aethionema arabicum HOM05D000454 ORTHO05D007581 2.5e-06 55.5 54 50.0
Hund24925 Selenicereus undatus HOM05D000454 ORTHO05D007581 2.5e-06 55.5 52 55.8
AT2G01680 Arabidopsis thaliana HOM05D000454 ORTHO05D007581 3.3e-06 55.1 54 46.3
Dinv07732 Davidia involucrata HOM05D000454 ORTHO05D007581 3.3e-06 55.1 54 51.9
Lalb_Chr16g0387541 Lupinus albus HOM05D000454 ORTHO05D007581 3.3e-06 55.1 68 47.1
ClCG01G006560 Citrullus lanatus HOM05D000454 ORTHO05D007581 4.3e-06 54.7 54 55.6
Nitab4.5_0000198g0170 Nicotiana tabacum HOM05D000454 ORTHO05D007581 4.3e-06 54.7 54 50.0
AL5G10780 Arabidopsis lyrata HOM05D000454 ORTHO05D007581 5.6e-06 54.3 54 48.1
CANSAT01G3250 Cannabis sativa HOM05D000454 ORTHO05D007581 5.6e-06 54.3 72 45.8
Lalb_Chr10g0095741 Lupinus albus HOM05D000454 ORTHO05D007581 5.6e-06 54.3 52 53.8
Sed0012819 Sechium edule HOM05D000454 ORTHO05D007581 5.6e-06 54.3 54 55.6
PSO017G5753 Papaver somniferum HOM05D000454 ORTHO05D007581 7.3e-06 53.9 52 50.0
PSO478G0178 Papaver somniferum HOM05D000454 ORTHO05D007581 7.3e-06 53.9 52 50.0
Glyma.08G045700 Glycine max HOM05D000454 ORTHO05D007581 9.5e-06 53.5 65 47.7
QL03p035752 Quercus lobata HOM05D000454 ORTHO05D007581 9.5e-06 53.5 52 50.0


User provided reference genes

Program Settings