Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb015950 Zea mays HOM05D006115 ORTHO05D007528 1.5e-84 316.2 171 100.0
Zm00001eb395230 Zea mays HOM05D006115 ORTHO05D007528 2.3e-64 249.2 172 83.7
Os03g0333400 Oryza sativa ssp. japonica HOM05D006115 ORTHO05D007528 7.3e-55 217.6 174 75.9
MBI02_g19258_MAGBIO Magnolia biondii HOM05D006115 ORTHO05D007528 1.3e-48 196.8 169 66.9
Cfa014568 Carpinus fangiana HOM05D006115 ORTHO05D007528 1.2e-46 190.3 116 84.5
GSVIVG01030552001 Vitis vinifera HOM05D006115 ORTHO05D007528 1.6e-46 189.9 135 76.3
Aqoxy4G01223 Aquilegia oxysepala HOM05D006115 ORTHO05D007528 2.8e-46 189.1 133 75.9
Gohir.D12G141300 Gossypium hirsutum HOM05D006115 ORTHO05D007528 2.8e-46 189.1 118 82.2
Gorai.008G152600 Gossypium raimondii HOM05D006115 ORTHO05D007528 2.8e-46 189.1 118 82.2
Gohir.A12G137300 Gossypium hirsutum HOM05D006115 ORTHO05D007528 8.1e-46 187.6 118 81.4
Nn1g03988 Nelumbo nucifera HOM05D006115 ORTHO05D007528 8.1e-46 187.6 145 70.3
Hma1.2p1_0875F.1_g231400 Hydrangea macrophylla HOM05D006115 ORTHO05D007528 1.1e-45 187.2 140 72.1
Duzib248G0317 Durio zibethinus HOM05D006115 ORTHO05D007528 1.8e-45 186.4 119 80.7
Manes.08G098700 Manihot esculenta HOM05D006115 ORTHO05D007528 2.4e-45 186.0 116 80.2
Thecc.02G175700 Theobroma cacao HOM05D006115 ORTHO05D007528 2.4e-45 186.0 119 80.7
CSS0015532 Camellia sinensis var. sinensis HOM05D006115 ORTHO05D007528 3.1e-45 185.7 133 72.9
CSS0031699 Camellia sinensis var. sinensis HOM05D006115 ORTHO05D007528 3.1e-45 185.7 133 72.9
AUR62028441 Chenopodium quinoa HOM05D006115 ORTHO05D007528 4.0e-45 185.3 149 70.5
ClCG02G001140 Citrullus lanatus HOM05D006115 ORTHO05D007528 5.2e-45 184.9 141 71.6
VMungo1080G1219 Vigna mungo HOM05D006115 ORTHO05D007528 6.8e-45 184.5 124 76.6
Lj8P115T48 Lonicera japonica HOM05D006115 ORTHO05D007528 8.9e-45 184.1 114 81.6
Potri.005G206200 Populus trichocarpa HOM05D006115 ORTHO05D007528 8.9e-45 184.1 129 76.0
Haze_13113 Corylus avellana HOM05D006115 ORTHO05D007528 1.2e-44 183.7 135 74.1
Duzib132G1267 Durio zibethinus HOM05D006115 ORTHO05D007528 3.4e-44 182.2 128 75.8
Eucgr.K00947 Eucalyptus grandis HOM05D006115 ORTHO05D007528 5.8e-44 181.4 161 66.5
Glyma.12G202500 Glycine max HOM05D006115 ORTHO05D007528 5.8e-44 181.4 116 80.2
Glyma.13G299200 Glycine max HOM05D006115 ORTHO05D007528 7.6e-44 181.0 114 80.7
QL08p037826 Quercus lobata HOM05D006115 ORTHO05D007528 7.6e-44 181.0 134 73.9
Sed0024793 Sechium edule HOM05D006115 ORTHO05D007528 7.6e-44 181.0 133 73.7
Actinidia09875 Actinidia chinensis HOM05D006115 ORTHO05D007528 9.9e-44 180.6 110 80.9
Potri.002G056300 Populus trichocarpa HOM05D006115 ORTHO05D007528 9.9e-44 180.6 158 62.7
Sabra05G0156800 Salix brachista HOM05D006115 ORTHO05D007528 9.9e-44 180.6 179 60.9
Sabra02G0045600 Salix brachista HOM05D006115 ORTHO05D007528 1.3e-43 180.3 114 78.9
Gohir.A01G015900 Gossypium hirsutum HOM05D006115 ORTHO05D007528 1.7e-43 179.9 110 82.7
CANSAT64G2665 Cannabis sativa HOM05D006115 ORTHO05D007528 2.2e-43 179.5 174 59.8
Prupe.3G235100 Prunus persica HOM05D006115 ORTHO05D007528 2.9e-43 179.1 137 70.8
Gohir.D01G015900 Gossypium hirsutum HOM05D006115 ORTHO05D007528 3.8e-43 178.7 156 66.0
AUR62041946 Chenopodium quinoa HOM05D006115 ORTHO05D007528 6.4e-43 177.9 155 65.8
Gorai.002G017600 Gossypium raimondii HOM05D006115 ORTHO05D007528 6.4e-43 177.9 156 66.0
Lj1P733T48 Lonicera japonica HOM05D006115 ORTHO05D007528 6.4e-43 177.9 124 75.8
unitig_26.g9943 Utricularia gibba HOM05D006115 ORTHO05D007528 6.4e-43 177.9 180 61.1
HanXRQChr17g0542591 Helianthus annuus HOM05D006115 ORTHO05D007528 8.4e-43 177.6 110 79.1
PGR142G3842 Punica granatum HOM05D006115 ORTHO05D007528 8.4e-43 177.6 170 62.4
MSTRG.12305 Avicennia marina HOM05D006115 ORTHO05D007528 1.1e-42 177.2 174 62.6
MSTRG.14200 Avicennia marina HOM05D006115 ORTHO05D007528 1.4e-42 176.8 169 62.1
THA.LOC104801178 Tarenaya hassleriana HOM05D006115 ORTHO05D007528 1.4e-42 176.8 111 78.4
MD09G1090500 Malus domestica HOM05D006115 ORTHO05D007528 1.9e-42 176.4 138 68.8
MD17G1079700 Malus domestica HOM05D006115 ORTHO05D007528 1.9e-42 176.4 165 62.4
Solyc07g054290.1 Solanum lycopersicum HOM05D006115 ORTHO05D007528 1.9e-42 176.4 135 70.4
Sopen07g028230 Solanum pennellii HOM05D006115 ORTHO05D007528 1.9e-42 176.4 135 70.4
PGSC0003DMG400018360 Solanum tuberosum HOM05D006115 ORTHO05D007528 1.9e-42 176.4 135 70.4
TWI75G0783 Tripterygium wilfordii HOM05D006115 ORTHO05D007528 1.9e-42 176.4 116 77.6
CiPaw.04G123900 Carya illinoinensis HOM05D006115 ORTHO05D007528 2.4e-42 176.0 143 71.3
FAN02G4183 Fragaria x ananassa HOM05D006115 ORTHO05D007528 2.4e-42 176.0 136 71.3
FAN09G2594 Fragaria x ananassa HOM05D006115 ORTHO05D007528 2.4e-42 176.0 136 71.3
Phvul.005G105900 Phaseolus vulgaris HOM05D006115 ORTHO05D007528 2.4e-42 176.0 173 60.7
COL.COLO4_35403 Corchorus olitorius HOM05D006115 ORTHO05D007528 3.2e-42 175.6 158 64.6
ECA246G1074 Erigeron canadensis HOM05D006115 ORTHO05D007528 3.2e-42 175.6 107 80.4
PSO210G0967 Papaver somniferum HOM05D006115 ORTHO05D007528 3.2e-42 175.6 168 60.1
FvH4_6g45050 Fragaria vesca HOM05D006115 ORTHO05D007528 4.2e-42 175.3 136 71.3
FAN14G2522 Fragaria x ananassa HOM05D006115 ORTHO05D007528 4.2e-42 175.3 136 71.3
Sed0009578 Sechium edule HOM05D006115 ORTHO05D007528 4.2e-42 175.3 141 68.8
RcHm_v2.0_Chr2g0162381 Rosa chinensis HOM05D006115 ORTHO05D007528 5.4e-42 174.9 136 71.3
Nitab4.5_0001090g0130 Nicotiana tabacum HOM05D006115 ORTHO05D007528 7.1e-42 174.5 138 70.3
Sc12g0002830 Simmondsia chinensis HOM05D006115 ORTHO05D007528 7.1e-42 174.5 103 85.4
THA.LOC104827374 Tarenaya hassleriana HOM05D006115 ORTHO05D007528 7.1e-42 174.5 133 68.4
CsaV3_7G004300 Cucumis sativus L. HOM05D006115 ORTHO05D007528 9.3e-42 174.1 169 60.4
Lalb_Chr14g0366761 Lupinus albus HOM05D006115 ORTHO05D007528 9.3e-42 174.1 171 59.6
MELO3C018748.2 Cucumis melo HOM05D006115 ORTHO05D007528 1.2e-41 173.7 169 59.8
Atru.chr6.3034 Acer truncatum HOM05D006115 ORTHO05D007528 1.6e-41 173.3 105 81.9
Lj3g0001000 Lotus japonicus HOM05D006115 ORTHO05D007528 1.6e-41 173.3 158 63.9
PSO832G3416 Papaver somniferum HOM05D006115 ORTHO05D007528 1.6e-41 173.3 167 58.7
SGA_v2.0_scaffold356G49787 Striga asiatica HOM05D006115 ORTHO05D007528 1.6e-41 173.3 118 78.0
HPP92_017628 Vanilla planifolia HOM05D006115 ORTHO05D007528 1.6e-41 173.3 146 64.4
Lsat_1_v5_gn_3_39480 Lactuca sativa HOM05D006115 ORTHO05D007528 2.7e-41 172.6 110 77.3
Peaxi162Scf00610g00313 Petunia axillaris HOM05D006115 ORTHO05D007528 2.7e-41 172.6 137 67.2
Cc05_g06750 Coffea canephora HOM05D006115 ORTHO05D007528 3.5e-41 172.2 141 66.7
Medtr2g090200 Medicago truncatula HOM05D006115 ORTHO05D007528 3.5e-41 172.2 133 69.2
Oeu040003.1 Olea europaea HOM05D006115 ORTHO05D007528 3.5e-41 172.2 136 67.6
BcaC05g24519 Brassica carinata HOM05D006115 ORTHO05D007528 4.6e-41 171.8 136 65.4
A10p02120 Brassica napus HOM05D006115 ORTHO05D007528 4.6e-41 171.8 136 65.4
C05p02030 Brassica napus HOM05D006115 ORTHO05D007528 4.6e-41 171.8 136 65.4
TWI18G1016 Tripterygium wilfordii HOM05D006115 ORTHO05D007528 4.6e-41 171.8 136 71.3
Carub.0001s0272 Capsella rubella HOM05D006115 ORTHO05D007528 6.0e-41 171.4 110 76.4
CARHR002940 Cardamine hirsuta HOM05D006115 ORTHO05D007528 6.0e-41 171.4 110 76.4
Lalb_Chr24g0399841 Lupinus albus HOM05D006115 ORTHO05D007528 6.0e-41 171.4 181 59.1
unitig_749.g13954 Utricularia gibba HOM05D006115 ORTHO05D007528 6.0e-41 171.4 169 60.9
Ah.08g220260 Amaranthus hybridus HOM05D006115 ORTHO05D007528 1.0e-40 170.6 169 60.4
BcaC07g36953 Brassica carinata HOM05D006115 ORTHO05D007528 1.3e-40 170.2 110 74.5
A08p37300 Brassica napus HOM05D006115 ORTHO05D007528 1.3e-40 170.2 110 74.5
C08p00700 Brassica napus HOM05D006115 ORTHO05D007528 1.3e-40 170.2 110 74.5
BraA10t42481Z Brassica rapa HOM05D006115 ORTHO05D007528 1.3e-40 170.2 105 77.1
CDE05G3372 Ceratophyllum demersum HOM05D006115 ORTHO05D007528 1.7e-40 169.9 160 59.4
Oeu029929.1 Olea europaea HOM05D006115 ORTHO05D007528 1.7e-40 169.9 136 69.1
TPR.G35547 Trifolium pratense HOM05D006115 ORTHO05D007528 1.7e-40 169.9 133 67.7
AL1G13100 Arabidopsis lyrata HOM05D006115 ORTHO05D007528 2.3e-40 169.5 161 60.9
Ciclev10016927m.g Citrus clementina HOM05D006115 ORTHO05D007528 2.3e-40 169.5 171 59.1
Thhalv10008901m.g Eutrema salsugineum HOM05D006115 ORTHO05D007528 2.3e-40 169.5 136 65.4
AT1G03600 Arabidopsis thaliana HOM05D006115 ORTHO05D007528 3.0e-40 169.1 161 60.9
BcaB02g06915 Brassica carinata HOM05D006115 ORTHO05D007528 3.0e-40 169.1 136 64.7
Psat7g036720 Pisum sativum HOM05D006115 ORTHO05D007528 3.0e-40 169.1 173 59.5
Nitab4.5_0005380g0050 Nicotiana tabacum HOM05D006115 ORTHO05D007528 3.9e-40 168.7 168 60.1
FAN05G1351 Fragaria x ananassa HOM05D006115 ORTHO05D007528 8.7e-40 167.5 133 69.2
BolC5t28981H Brassica oleracea HOM05D006115 ORTHO05D007528 1.1e-39 167.2 175 55.4
Migut.H01055 Erythranthe guttata HOM05D006115 ORTHO05D007528 1.1e-39 167.2 136 66.2
Rhsim06G0148500 Rhododendron simsii HOM05D006115 ORTHO05D007528 1.1e-39 167.2 129 66.7
DCAR_019192 Daucus carota HOM05D006115 ORTHO05D007528 1.5e-39 166.8 121 69.4
Peaxi162Scf00132g00062 Petunia axillaris HOM05D006115 ORTHO05D007528 1.9e-39 166.4 168 56.5
BolC8t46868H Brassica oleracea HOM05D006115 ORTHO05D007528 2.5e-39 166.0 172 57.6
Sp1g02510 Schrenkiella parvula HOM05D006115 ORTHO05D007528 5.6e-39 164.9 176 54.5
BraA08t35627Z Brassica rapa HOM05D006115 ORTHO05D007528 2.8e-38 162.5 174 53.4
Aa31LG1G20930 Aethionema arabicum HOM05D006115 ORTHO05D007528 4.8e-38 161.8 172 55.8
SEGI_04908 Sequoiadendron giganteum HOM05D006115 ORTHO05D007528 3.4e-36 155.6 143 60.1
Duzib052G1052 Durio zibethinus HOM05D006115 ORTHO05D007528 6.4e-35 151.4 107 72.0
Dinv03833 Davidia involucrata HOM05D006115 ORTHO05D007528 1.2e-33 147.1 158 55.7
SMO364G0930 Selaginella moellendorffii HOM05D006115 ORTHO05D007528 3.5e-33 145.6 134 59.7
Pp3c9_26020 Physcomitrium patens HOM05D006115 ORTHO05D007528 3.0e-32 142.5 124 57.3
Ca_01513_v3 Cicer arietinum L. HOM05D006115 ORTHO05D007528 1.1e-31 140.6 85 81.2
AagrBONN_evm.TU.Sc2ySwM_228.954 Anthoceros agrestis HOM05D006115 ORTHO05D007528 1.5e-31 140.2 169 50.9
CBR_g50764 Chara braunii HOM05D006115 ORTHO05D007528 1.6e-30 136.7 121 58.7
Mapoly0049s0056 Marchantia polymorpha HOM05D006115 ORTHO05D007528 9.0e-29 131.0 173 49.1
CDE05G0569 Ceratophyllum demersum HOM05D006115 ORTHO05D007528 3.5e-25 119.0 112 55.4
Actinidia11067 Actinidia chinensis HOM05D006115 ORTHO05D007528 4.6e-25 118.6 123 58.5
Cre05.g243800 Chlamydomonas reinhardtii HOM05D006115 ORTHO05D007528 6.7e-24 114.8 178 42.7
MCO14G469 Micromonas commoda HOM05D006115 ORTHO05D007528 5.3e-21 105.1 179 40.2
ATR0693G305 Amborella trichopoda HOM05D006115 ORTHO05D007528 1.6e-17 93.6 99 58.6
TAR627G0228 Trochodendron aralioides HOM05D006115 ORTHO05D007528 1.5e-15 87.0 91 57.1
Dinv23684 Davidia involucrata HOM05D006115 ORTHO05D007528 3.7e-14 82.4 97 48.5
FAN22G0737 Fragaria x ananassa HOM05D007072 ORTHO05D008841 2.5e-07 59.7 110 31.8
FvH4_4g15520 Fragaria vesca HOM05D007072 ORTHO05D008841 5.7e-07 58.5 110 30.9
FAN12G0870 Fragaria x ananassa HOM05D007072 ORTHO05D008841 5.7e-07 58.5 110 30.9
FAN07G0953 Fragaria x ananassa HOM05D007072 ORTHO05D008841 9.7e-07 57.8 110 30.9
MD16G1193700 Malus domestica HOM05D007072 ORTHO05D008841 2.8e-06 56.2 102 31.4
Ciclev10005922m.g Citrus clementina HOM05D007072 ORTHO05D008841 4.8e-06 55.5 106 25.5
Gorai.011G195700 Gossypium raimondii HOM05D007072 ORTHO05D008841 4.8e-06 55.5 106 26.4
Gohir.D10G174900 Gossypium hirsutum HOM05D007072 ORTHO05D008841 6.3e-06 55.1 106 25.5
Nitab4.5_0000043g0120 Nicotiana tabacum HOM05D007072 ORTHO05D008841 6.3e-06 55.1 110 28.2
Prupe.1G013400 Prunus persica HOM05D007072 ORTHO05D008841 6.3e-06 55.1 110 29.1


User provided reference genes

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