Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb014970 Zea mays HOM05D004118 ORTHO05D004686 0.0e+00 1506.5 837 100.0
Zm00001eb395950 Zea mays HOM05D004118 ORTHO05D004686 0.0e+00 1203.0 840 83.8
Os06g0352900 Oryza sativa ssp. japonica HOM05D004118 ORTHO05D004686 2.2e-253 879.4 862 67.6
HPP92_002942 Vanilla planifolia HOM05D004118 ORTHO05D004686 3.4e-73 280.8 844 36.6
FvH4_3g19150 Fragaria vesca HOM05D004118 ORTHO05D004686 9.7e-60 236.1 881 31.4
FAN11G3070 Fragaria x ananassa HOM05D004118 ORTHO05D004686 6.3e-59 233.4 886 31.7
FAN21G0508 Fragaria x ananassa HOM05D004118 ORTHO05D004686 7.0e-58 229.9 881 33.8
PGR083G2344 Punica granatum HOM05D004118 ORTHO05D004686 2.2e-56 224.9 861 31.9
Sabra11G0090500 Salix brachista HOM05D004118 ORTHO05D004686 1.1e-55 222.6 871 31.2
DCAR_021002 Daucus carota HOM05D004118 ORTHO05D004686 1.9e-55 221.9 866 30.8
TWI39G0897 Tripterygium wilfordii HOM05D004118 ORTHO05D004686 3.2e-55 221.1 890 30.1
Sabra11G0091500 Salix brachista HOM05D004118 ORTHO05D004686 9.4e-55 219.5 868 31.5
Aqoxy1G02262 Aquilegia oxysepala HOM05D004118 ORTHO05D004686 2.1e-54 218.4 867 34.1
FAN25G0990 Fragaria x ananassa HOM05D004118 ORTHO05D004686 1.4e-53 215.7 879 30.6
HPP92_003871 Vanilla planifolia HOM05D004118 ORTHO05D004686 1.4e-53 215.7 857 32.3
FAN16G2866 Fragaria x ananassa HOM05D004118 ORTHO05D004686 3.9e-53 214.2 880 31.4
RcHm_v2.0_Chr5g0032241 Rosa chinensis HOM05D004118 ORTHO05D004686 2.0e-52 211.8 884 34.8
QL08p023555 Quercus lobata HOM05D004118 ORTHO05D004686 2.6e-52 211.5 882 35.1
Manes.15G090200 Manihot esculenta HOM05D004118 ORTHO05D004686 4.8e-51 207.2 874 30.3
Potri.011G097700 Populus trichocarpa HOM05D004118 ORTHO05D004686 6.3e-51 206.8 891 31.1
MD03G1236100 Malus domestica HOM05D004118 ORTHO05D004686 2.4e-50 204.9 886 30.7
Haze_09381 Corylus avellana HOM05D004118 ORTHO05D004686 4.1e-50 204.1 873 35.9
MSTRG.6813 Avicennia marina HOM05D004118 ORTHO05D004686 1.2e-49 202.6 885 30.4
Solyc07g062730.1 Solanum lycopersicum HOM05D004118 ORTHO05D004686 1.6e-49 202.2 875 31.3
Nitab4.5_0000246g0070 Nicotiana tabacum HOM05D004118 ORTHO05D004686 2.0e-49 201.8 886 31.6
Sopen07g030960 Solanum pennellii HOM05D004118 ORTHO05D004686 2.0e-49 201.8 866 32.0
TAR627G0391 Trochodendron aralioides HOM05D004118 ORTHO05D004686 3.5e-49 201.1 847 34.8
Glyma.13G273000 Glycine max HOM05D004118 ORTHO05D004686 4.5e-49 200.7 870 30.5
Nn1g04275 Nelumbo nucifera HOM05D004118 ORTHO05D004686 1.7e-48 198.7 861 32.4
CiPaw.12G116800 Carya illinoinensis HOM05D004118 ORTHO05D004686 2.2e-48 198.4 869 30.4
MD11G1256900 Malus domestica HOM05D004118 ORTHO05D004686 2.2e-48 198.4 892 30.4
SGA_v2.0_scaffold73G24222 Striga asiatica HOM05D004118 ORTHO05D004686 3.8e-48 197.6 902 29.3
Cfa020624 Carpinus fangiana HOM05D004118 ORTHO05D004686 8.5e-48 196.4 862 34.1
PGSC0003DMG400012399 Solanum tuberosum HOM05D004118 ORTHO05D004686 1.9e-47 195.3 868 30.1
Nitab4.5_0011677g0020 Nicotiana tabacum HOM05D004118 ORTHO05D004686 4.2e-47 194.1 879 31.4
CSS0010936 Camellia sinensis var. sinensis HOM05D004118 ORTHO05D004686 9.4e-47 193.0 859 30.0
Eucgr.F01179 Eucalyptus grandis HOM05D004118 ORTHO05D004686 2.7e-46 191.4 865 29.8
Prupe.4G173200 Prunus persica HOM05D004118 ORTHO05D004686 2.7e-46 191.4 880 31.7
CiPaw.11G166400 Carya illinoinensis HOM05D004118 ORTHO05D004686 4.7e-46 190.7 863 29.4
Sed0017211 Sechium edule HOM05D004118 ORTHO05D004686 1.4e-45 189.1 819 34.1
Cpa.g.sc80.12 Carica papaya HOM05D004118 ORTHO05D004686 3.0e-45 188.0 892 29.5
Sc16g0007320 Simmondsia chinensis HOM05D004118 ORTHO05D004686 3.0e-45 188.0 883 30.5
Thecc.07G100000 Theobroma cacao HOM05D004118 ORTHO05D004686 3.4e-44 184.5 875 31.9
Lalb_Chr20g0109451 Lupinus albus HOM05D004118 ORTHO05D004686 5.7e-44 183.7 864 30.2
VMungo1080G0043 Vigna mungo HOM05D004118 ORTHO05D004686 5.7e-44 183.7 875 29.8
Ciclev10007570m.g Citrus clementina HOM05D004118 ORTHO05D004686 1.7e-43 182.2 870 29.1
CAN.G162.27 Capsicum annuum HOM05D004118 ORTHO05D004686 2.8e-43 181.4 835 30.9
Manes.03G104700 Manihot esculenta HOM05D004118 ORTHO05D004686 4.8e-43 180.6 841 34.0
Potri.001G373100 Populus trichocarpa HOM05D004118 ORTHO05D004686 6.3e-43 180.3 836 28.8
Gohir.D13G152264 Gossypium hirsutum HOM05D004118 ORTHO05D004686 1.8e-42 178.7 865 27.9
MBI07_g32544_MAGBIO Magnolia biondii HOM05D004118 ORTHO05D004686 3.1e-42 177.9 854 32.9
Actinidia07500 Actinidia chinensis HOM05D004118 ORTHO05D004686 4.1e-42 177.6 818 31.8
THA.LOC104810455 Tarenaya hassleriana HOM05D004118 ORTHO05D004686 5.3e-42 177.2 851 30.8
PGSC0003DMG400015371 Solanum tuberosum HOM05D004118 ORTHO05D004686 1.2e-41 176.0 823 30.1
Phvul.005G069300 Phaseolus vulgaris HOM05D004118 ORTHO05D004686 1.6e-41 175.6 879 30.4
MSTRG.15246 Avicennia marina HOM05D004118 ORTHO05D004686 2.0e-41 175.3 830 29.2
Rhsim04G0023200 Rhododendron simsii HOM05D004118 ORTHO05D004686 7.7e-41 173.3 793 29.8
ECA236G3195 Erigeron canadensis HOM05D004118 ORTHO05D004686 1.7e-40 172.2 822 29.3
Sabra16G0245500 Salix brachista HOM05D004118 ORTHO05D004686 2.9e-40 171.4 836 27.5
Medtr2g078530 Medicago truncatula HOM05D004118 ORTHO05D004686 5.0e-40 170.6 886 29.6
Actinidia35234 Actinidia chinensis HOM05D004118 ORTHO05D001556 2.5e-39 168.3 850 34.0
Dinv20215 Davidia involucrata HOM05D004118 ORTHO05D004686 2.5e-39 168.3 841 29.1
Duzib213G0890 Durio zibethinus HOM05D004118 ORTHO05D004686 2.5e-39 168.3 891 28.5
Psat5g241400 Pisum sativum HOM05D004118 ORTHO05D004686 3.2e-39 167.9 847 31.6
Lsat_1_v5_gn_9_98421 Lactuca sativa HOM05D004118 ORTHO05D004686 5.5e-39 167.2 875 28.0
Lalb_Chr25g0286181 Lupinus albus HOM05D004118 ORTHO05D004686 5.5e-39 167.2 814 30.3
PSO675G0887 Papaver somniferum HOM05D004118 ORTHO05D004686 7.2e-39 166.8 844 28.7
TWI38G2280 Tripterygium wilfordii HOM05D004118 ORTHO05D004686 1.6e-38 165.6 872 28.2
ATR0602G295 Amborella trichopoda HOM05D004118 ORTHO05D004686 3.6e-38 164.5 865 29.1
Gohir.A13G147400 Gossypium hirsutum HOM05D004118 ORTHO05D004686 8.0e-38 163.3 863 30.5
PSO541G0755 Papaver somniferum HOM05D004118 ORTHO05D004686 8.0e-38 163.3 848 29.5
MSTRG.12889 Avicennia marina HOM05D004118 ORTHO05D004686 1.0e-37 162.9 824 27.9
Gorai.013G171900 Gossypium raimondii HOM05D004118 ORTHO05D004686 1.0e-37 162.9 863 29.9
Cc05_g11580 Coffea canephora HOM05D004118 ORTHO05D004686 1.4e-37 162.5 901 32.6
Sp3g13300 Schrenkiella parvula HOM05D004118 ORTHO05D004686 1.8e-37 162.2 858 28.9
HPP92_003895 Vanilla planifolia HOM05D004118 ORTHO05D004686 2.3e-37 161.8 363 38.3
PSO478G3864 Papaver somniferum HOM05D004118 ORTHO05D004686 2.0e-36 158.7 898 27.7
CsaV3_3G019580 Cucumis sativus L. HOM05D004118 ORTHO05D004686 3.4e-36 157.9 881 32.6
MELO3C019394.2 Cucumis melo HOM05D004118 ORTHO05D004686 4.4e-36 157.5 872 31.9
Migut.M00768 Erythranthe guttata HOM05D004118 ORTHO05D004686 9.8e-36 156.4 880 29.4
HanXRQChr03g0070941 Helianthus annuus HOM05D004118 ORTHO05D004686 3.7e-35 154.5 855 28.1
vmacro11898 Vaccinium macrocarpon HOM05D004118 ORTHO05D004686 3.1e-34 151.4 845 30.4
Nitab4.5_0003033g0050 Nicotiana tabacum HOM05D004118 ORTHO05D004686 7.0e-34 150.2 848 32.1
PSO017G1325 Papaver somniferum HOM05D004118 ORTHO05D004686 7.0e-34 150.2 890 28.0
Sopen12g005780 Solanum pennellii HOM05D004118 ORTHO05D004686 1.2e-33 149.4 821 27.8
CANSAT35G0858 Cannabis sativa HOM05D004118 ORTHO05D004686 1.6e-33 149.1 883 28.8
Peaxi162Scf00000g00285 Petunia axillaris HOM05D004118 ORTHO05D004686 2.7e-33 148.3 857 28.8
SalBow8G5405 Salvia bowleyana HOM05D004118 ORTHO05D004686 2.7e-33 148.3 824 28.4
Aqoxy4G00578 Aquilegia oxysepala HOM05D004118 ORTHO05D004686 4.5e-33 147.5 878 27.9
CSS0009782 Camellia sinensis var. sinensis HOM05D004118 ORTHO05D004686 4.5e-33 147.5 803 27.9
Thhalv10020211m.g Eutrema salsugineum HOM05D004118 ORTHO05D004686 7.7e-33 146.7 868 28.3
Gorai.002G066200 Gossypium raimondii HOM05D004118 ORTHO05D004686 7.7e-33 146.7 500 33.2
Peaxi162Scf00069g00197 Petunia axillaris HOM05D004118 ORTHO05D004686 1.7e-32 145.6 842 27.1
Aa31LG8G2310 Aethionema arabicum HOM05D004118 ORTHO05D004686 3.8e-32 144.4 845 28.6
Nitab4.5_0000332g0190 Nicotiana tabacum HOM05D004118 ORTHO05D004686 3.8e-32 144.4 849 29.0
Rhsim06G0203400 Rhododendron simsii HOM05D004118 ORTHO05D004686 3.3e-31 141.4 802 28.4
Lj8C153G19 Lonicera japonica HOM05D004118 ORTHO05D004686 4.2e-31 141.0 846 28.6
Sed0016267 Sechium edule HOM05D004118 ORTHO05D004686 4.2e-31 141.0 785 29.9
CSS0030924 Camellia sinensis var. sinensis HOM05D004118 ORTHO05D004686 9.5e-31 139.8 808 27.0
HanXRQChr10g0302481 Helianthus annuus HOM05D004118 ORTHO05D004686 2.8e-30 138.3 819 31.3
Lsat_1_v5_gn_7_103661 Lactuca sativa HOM05D004118 ORTHO05D004686 2.8e-30 138.3 822 31.3
Dinv14950 Davidia involucrata HOM05D004118 ORTHO05D004686 8.9e-29 133.3 723 28.5
Lj3g0023579 Lotus japonicus HOM05D004118 ORTHO05D004686 3.4e-28 131.3 876 28.7
CARHR090060 Cardamine hirsuta HOM05D004118 ORTHO05D004686 5.7e-28 130.6 855 28.2
Gohir.D01G046700 Gossypium hirsutum HOM05D004118 ORTHO05D004686 9.8e-28 129.8 807 27.1
Glyma.12G227300 Glycine max HOM05D004118 ORTHO05D004686 1.3e-27 129.4 894 28.2
Lsat_1_v5_gn_5_128820 Lactuca sativa HOM05D004118 ORTHO05D004686 1.7e-27 129.0 829 26.7
arahy.Tifrunner.gnm1.ann1.YMW7LF Arachis hypogaea HOM05D004118 ORTHO05D004686 2.2e-27 128.6 801 26.1
Hma1.2p1_0313F.1_g121640 Hydrangea macrophylla HOM05D004118 ORTHO05D004686 2.8e-27 128.3 735 34.3
TPR.G17554 Trifolium pratense HOM05D004118 ORTHO05D004686 3.7e-27 127.9 877 27.4
Oeu019296.1 Olea europaea HOM05D004118 ORTHO05D004686 1.4e-26 125.9 844 30.1
ECA240G2123 Erigeron canadensis HOM05D004118 ORTHO05D004686 9.2e-26 123.2 880 28.5
AL3G27450 Arabidopsis lyrata HOM05D004118 ORTHO05D004686 1.2e-25 122.9 877 27.0
HanXRQChr15g0494281 Helianthus annuus HOM05D004118 ORTHO05D004686 1.3e-24 119.4 316 34.8
Duzib170G0047 Durio zibethinus HOM05D004118 ORTHO05D004686 2.5e-23 115.2 871 27.7
HPP92_003896 Vanilla planifolia HOM05D004118 ORTHO05D004686 1.6e-22 112.5 200 39.5
ECA234G1224 Erigeron canadensis HOM05D004118 ORTHO05D004686 1.4e-21 109.4 808 25.5
Ah.06g194460 Amaranthus hybridus HOM05D004118 ORTHO05D004686 1.8e-21 109.0 874 28.5
unitig_747.g21581 Utricularia gibba HOM05D004118 ORTHO05D004686 1.8e-21 109.0 841 25.4
Ah.04g162010 Amaranthus hybridus HOM05D004118 ORTHO05D004686 2.3e-21 108.6 340 36.2
unitig_37.g12565 Utricularia gibba HOM05D004118 ORTHO05D004686 1.2e-20 106.3 832 24.3
Lalb_Chr01g0006651 Lupinus albus HOM05D004118 ORTHO05D004686 3.4e-20 104.8 815 24.2
Oeu025351.1 Olea europaea HOM05D004118 ORTHO05D004686 2.2e-19 102.1 179 40.8
PSO675G3813 Papaver somniferum HOM05D004118 ORTHO05D004686 2.4e-18 98.6 338 32.8
SGA_v2.0_scaffold70G23697 Striga asiatica HOM05D004118 ORTHO05D004686 3.2e-18 98.2 766 27.3
EL10Ac4g08266 Beta vulgaris HOM05D004118 ORTHO05D004686 5.4e-18 97.4 892 27.9
THA.LOC104798758 Tarenaya hassleriana HOM05D004118 ORTHO05D004686 9.2e-18 96.7 619 27.6
Actinidia14383 Actinidia chinensis HOM05D004118 ORTHO05D004686 7.8e-17 93.6 175 41.7
GSVIVG01014262001 Vitis vinifera HOM05D004118 ORTHO05D003395 1.5e-15 89.4 301 31.6
BcaB06g29535 Brassica carinata HOM05D004118 ORTHO05D004686 2.5e-15 88.6 840 25.8
Nn1g06377 Nelumbo nucifera HOM05D004118 ORTHO05D004686 5.6e-15 87.4 286 31.1
C05p52120 Brassica napus HOM05D004118 ORTHO05D004686 7.3e-15 87.0 840 25.8
BolC5t33897H Brassica oleracea HOM05D004118 ORTHO05D004686 7.3e-15 87.0 840 25.8
DCAR_019575 Daucus carota HOM05D004118 ORTHO05D004686 1.2e-14 86.3 754 24.5
Lsat_1_v5_gn_1_36460 Lactuca sativa HOM05D004118 ORTHO05D004686 3.6e-14 84.7 166 41.6
SGA_v2.0_scaffold130G34343 Striga asiatica HOM05D004118 ORTHO05D004686 3.6e-14 84.7 273 32.6
Atru.chr2.2380 Acer truncatum HOM05D004118 ORTHO05D004686 6.2e-14 84.0 262 33.2
AT3G15095 Arabidopsis thaliana HOM05D004118 ORTHO05D004686 8.0e-14 83.6 171 38.6
C01p49420 Brassica napus HOM05D004118 ORTHO05D004686 1.1e-13 83.2 277 36.8
BcaB04g20948 Brassica carinata HOM05D004118 ORTHO05D004686 1.4e-13 82.8 787 25.4
A05p34340 Brassica napus HOM05D004118 ORTHO05D004686 1.4e-13 82.8 851 25.0
BolC1t04899H Brassica oleracea HOM05D004118 ORTHO05D004686 1.8e-13 82.4 301 35.2
AUR62036141 Chenopodium quinoa HOM05D004118 ORTHO05D004686 1.8e-13 82.4 854 24.2
HanXRQChr12g0372791 Helianthus annuus HOM05D004118 ORTHO05D004686 2.3e-13 82.0 203 32.5
Lalb_Chr03g0030811 Lupinus albus HOM05D004118 ORTHO05D004686 3.1e-13 81.6 296 31.1
Lsat_1_v5_gn_4_172920 Lactuca sativa HOM05D004118 ORTHO05D004686 4.0e-13 81.3 231 38.1
BcaC09g48474 Brassica carinata HOM05D004118 ORTHO05D004686 5.2e-13 80.9 319 33.9
arahy.Tifrunner.gnm1.ann1.82B0EJ Arachis hypogaea HOM05D004118 ORTHO05D004686 2.0e-12 79.0 724 24.2
Cc04_g12070 Coffea canephora HOM05D004118 ORTHO05D004686 2.6e-12 78.6 142 40.1
Gohir.A01G060200 Gossypium hirsutum HOM05D004118 ORTHO05D004686 3.4e-12 78.2 576 25.9
Solyc12g014040.1 Solanum lycopersicum HOM05D004118 ORTHO05D004686 3.4e-12 78.2 218 33.9
CAN.G329.5 Capsicum annuum HOM05D004118 ORTHO05D004686 4.4e-12 77.8 263 32.3
Atru.chr2.2381 Acer truncatum HOM05D004118 ORTHO05D004686 5.8e-12 77.4 154 37.7
Gorai.004G029800 Gossypium raimondii HOM05D004118 ORTHO05D004686 9.8e-12 76.6 254 32.3
BraA05t22255Z Brassica rapa HOM05D004118 ORTHO05D004686 2.2e-11 75.5 850 24.7
Gohir.A08G021600 Gossypium hirsutum HOM05D004118 ORTHO05D004686 4.9e-11 74.3 809 23.5
SEGI_08873 Sequoiadendron giganteum HOM05D004118 ORTHO05D004686 4.9e-11 74.3 824 24.0
Actinidia33372 Actinidia chinensis HOM05D004118 ORTHO05D004686 4.1e-10 71.2 158 39.9
CDE10G0292 Ceratophyllum demersum HOM05D004118 ORTHO05D004686 5.4e-10 70.9 268 29.1
CDE10G0599 Ceratophyllum demersum HOM05D004118 ORTHO05D004686 5.4e-10 70.9 256 27.0
DCAR_017117 Daucus carota HOM05D004118 ORTHO05D004686 7.1e-10 70.5 853 25.9
Gohir.D08G032400 Gossypium hirsutum HOM05D004118 ORTHO05D004686 2.1e-09 68.9 809 23.7
Lj1P837T15 Lonicera japonica HOM05D004118 ORTHO05D004686 3.5e-09 68.2 90 52.2
Lalb_Chr19g0134031 Lupinus albus HOM05D004118 ORTHO05D004686 4.6e-09 67.8 293 31.4
Zm00001eb098670 Zea mays HOM05D003923 ORTHO05D004553 2.3e-08 65.5 382 28.3
SEGI_02629 Sequoiadendron giganteum HOM05D004118 ORTHO05D004686 6.6e-08 63.9 423 25.8
AUR62019494 Chenopodium quinoa HOM05D004118 ORTHO05D004686 1.5e-07 62.8 39 66.7
PGR004G1454 Punica granatum HOM05D004499 ORTHO05D004928 1.9e-07 62.4 304 27.6
TPR.G17527 Trifolium pratense HOM05D004118 ORTHO05D004686 7.3e-07 60.5 55 56.4
TAR623G0879 Trochodendron aralioides HOM05D004499 ORTHO05D004928 1.6e-06 59.3 53 58.5
Haze_20629 Corylus avellana HOM05D004499 ORTHO05D004928 2.8e-06 58.5 288 29.9


User provided reference genes

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