Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb013690 Zea mays HOM05D004936 ORTHO05D005977 1.0e-88 330.1 170 100.0
Os03g0296300 Oryza sativa ssp. japonica HOM05D004936 ORTHO05D005977 5.9e-73 277.7 170 84.7
GSVIVG01024670001 Vitis vinifera HOM05D004936 ORTHO05D005977 1.9e-63 246.1 169 72.8
TAR636G1077 Trochodendron aralioides HOM05D004936 ORTHO05D005977 2.5e-63 245.7 169 71.0
RcHm_v2.0_Chr5g0071211 Rosa chinensis HOM05D004936 ORTHO05D005977 3.6e-62 241.9 150 76.0
Thhalv10008922m.g Eutrema salsugineum HOM05D004936 ORTHO05D005977 6.1e-62 241.1 169 68.6
THA.LOC104812175 Tarenaya hassleriana HOM05D004936 ORTHO05D005977 6.1e-62 241.1 167 71.3
Hma1.2p1_0146F.1_g065480 Hydrangea macrophylla HOM05D004936 ORTHO05D005977 1.8e-61 239.6 163 70.6
BcaC07g38896 Brassica carinata HOM05D004936 ORTHO05D005977 5.2e-61 238.0 168 69.0
C08p18520 Brassica napus HOM05D004936 ORTHO05D005977 5.2e-61 238.0 168 69.0
C08p43440 Brassica napus HOM05D004936 ORTHO05D005977 5.2e-61 238.0 166 69.3
BolC8t49484H Brassica oleracea HOM05D004936 ORTHO05D005977 5.2e-61 238.0 168 69.0
BolC8t51892H Brassica oleracea HOM05D004936 ORTHO05D005977 5.2e-61 238.0 166 69.3
Aa31LG7G2800 Aethionema arabicum HOM05D004936 ORTHO05D005977 8.8e-61 237.3 169 68.0
A09p59990 Brassica napus HOM05D004936 ORTHO05D005977 1.2e-60 236.9 166 68.7
BraA09t41369Z Brassica rapa HOM05D004936 ORTHO05D005977 1.2e-60 236.9 166 68.7
Migut.G00331 Erythranthe guttata HOM05D004936 ORTHO05D005977 1.2e-60 236.9 167 67.1
AL1G30690 Arabidopsis lyrata HOM05D004936 ORTHO05D005977 1.5e-60 236.5 169 66.9
BraA08t34977Z Brassica rapa HOM05D004936 ORTHO05D005977 1.5e-60 236.5 168 68.5
CSS0031896 Camellia sinensis var. sinensis HOM05D004936 ORTHO05D005977 2.0e-60 236.1 165 68.5
CSS0046409 Camellia sinensis var. sinensis HOM05D004936 ORTHO05D005977 2.0e-60 236.1 165 68.5
BcaB03g12974 Brassica carinata HOM05D004936 ORTHO05D005977 3.4e-60 235.3 170 67.1
BcaNung05441 Brassica carinata HOM05D004936 ORTHO05D005977 3.4e-60 235.3 170 67.1
Hund18959 Selenicereus undatus HOM05D004936 ORTHO05D005977 3.4e-60 235.3 146 76.7
BcaC07g41334 Brassica carinata HOM05D004936 ORTHO05D005977 4.4e-60 235.0 169 68.6
A08p30450 Brassica napus HOM05D004936 ORTHO05D005977 4.4e-60 235.0 166 68.1
Carub.0001s1794 Capsella rubella HOM05D004936 ORTHO05D005977 5.7e-60 234.6 169 66.9
SalBow5G1663 Salvia bowleyana HOM05D004936 ORTHO05D005977 9.8e-60 233.8 165 69.7
Sp1g16280 Schrenkiella parvula HOM05D004936 ORTHO05D005977 1.3e-59 233.4 165 67.9
CDE06G1927 Ceratophyllum demersum HOM05D004936 ORTHO05D005977 2.2e-59 232.6 169 67.5
Gohir.D12G270000 Gossypium hirsutum HOM05D004936 ORTHO05D005977 4.9e-59 231.5 147 72.8
Ah.15g096180 Amaranthus hybridus HOM05D004936 ORTHO05D005977 6.3e-59 231.1 164 70.1
Gohir.A12G269500 Gossypium hirsutum HOM05D004936 ORTHO05D005977 6.3e-59 231.1 147 72.1
CARHR018890 Cardamine hirsuta HOM05D004936 ORTHO05D005977 1.1e-58 230.3 169 65.1
Potri.001G281200 Populus trichocarpa HOM05D004936 ORTHO05D005977 1.8e-58 229.6 156 69.9
Ciclev10029395m.g Citrus clementina HOM05D004936 ORTHO05D005977 2.4e-58 229.2 171 66.1
HanXRQChr14g0439861 Helianthus annuus HOM05D004936 ORTHO05D005977 3.1e-58 228.8 169 67.5
unitig_736.g22495 Utricularia gibba HOM05D004936 ORTHO05D005977 3.1e-58 228.8 170 65.9
Potri.009G076400 Populus trichocarpa HOM05D004936 ORTHO05D005977 5.4e-58 228.0 166 66.9
Gorai.008G290300 Gossypium raimondii HOM05D004936 ORTHO05D005977 7.0e-58 227.6 172 66.3
Aqoxy1G01790 Aquilegia oxysepala HOM05D004936 ORTHO05D005977 9.2e-58 227.3 160 68.1
FvH4_3g39470 Fragaria vesca HOM05D004936 ORTHO05D005977 9.2e-58 227.3 150 70.7
FAN11G2192 Fragaria x ananassa HOM05D004936 ORTHO05D005977 9.2e-58 227.3 150 70.7
FAN21G3073 Fragaria x ananassa HOM05D004936 ORTHO05D005977 9.2e-58 227.3 150 70.7
CiPaw.13G071600 Carya illinoinensis HOM05D004936 ORTHO05D005977 1.2e-57 226.9 167 67.1
FAN16G3562 Fragaria x ananassa HOM05D004936 ORTHO05D005977 2.0e-57 226.1 161 66.5
Medtr2g070380 Medicago truncatula HOM05D004936 ORTHO05D005977 2.7e-57 225.7 146 71.9
EL10Ac7g15900 Beta vulgaris HOM05D004936 ORTHO05D005977 3.5e-57 225.3 167 68.3
AUR62009688 Chenopodium quinoa HOM05D004936 ORTHO05D005977 3.5e-57 225.3 169 65.7
AUR62001892 Chenopodium quinoa HOM05D004936 ORTHO05D005977 4.5e-57 224.9 169 66.3
Duzib068G0913 Durio zibethinus HOM05D004936 ORTHO05D005977 4.5e-57 224.9 160 68.1
Atru.chr3.4141 Acer truncatum HOM05D004936 ORTHO05D005977 5.9e-57 224.6 173 64.7
PSO832G3733 Papaver somniferum HOM05D004936 ORTHO05D005977 1.0e-56 223.8 158 66.5
PSO210G4578 Papaver somniferum HOM05D004936 ORTHO05D005977 2.3e-56 222.6 169 64.5
Eucgr.K02762 Eucalyptus grandis HOM05D004936 ORTHO05D005977 3.8e-56 221.9 170 64.1
Manes.03G100200 Manihot esculenta HOM05D004936 ORTHO05D005977 3.8e-56 221.9 160 66.2
Medtr4g077950 Medicago truncatula HOM05D004936 ORTHO05D005977 3.8e-56 221.9 169 63.9
Manes.15G096000 Manihot esculenta HOM05D004936 ORTHO05D005977 5.0e-56 221.5 155 67.7
QL01p039898 Quercus lobata HOM05D004936 ORTHO05D005977 1.9e-55 219.5 161 68.3
PGSC0003DMG402019636 Solanum tuberosum HOM05D004936 ORTHO05D005977 1.9e-55 219.5 169 67.5
arahy.Tifrunner.gnm1.ann1.Z0D2FZ Arachis hypogaea HOM05D004936 ORTHO05D005977 5.6e-55 218.0 168 65.5
Lalb_Chr03g0024401 Lupinus albus HOM05D004936 ORTHO05D005977 5.6e-55 218.0 167 65.3
Rhsim13G0065400 Rhododendron simsii HOM05D004936 ORTHO05D005977 5.6e-55 218.0 168 64.9
arahy.Tifrunner.gnm1.ann1.K3S5GW Arachis hypogaea HOM05D004936 ORTHO05D005977 7.3e-55 217.6 168 65.5
Dinv28681 Davidia involucrata HOM05D004936 ORTHO05D005977 7.3e-55 217.6 158 68.4
FAN25G3861 Fragaria x ananassa HOM05D004936 ORTHO05D005977 1.2e-54 216.9 141 71.6
Solyc11g068980.2 Solanum lycopersicum HOM05D004936 ORTHO05D005977 1.6e-54 216.5 169 66.3
Sopen11g027690 Solanum pennellii HOM05D004936 ORTHO05D005977 1.6e-54 216.5 169 66.3
Lsat_1_v5_gn_2_60241 Lactuca sativa HOM05D004936 ORTHO05D005977 6.1e-54 214.5 151 68.9
Sed0012478 Sechium edule HOM05D004936 ORTHO05D005977 8.0e-54 214.2 170 64.1
CANSAT54G2258 Cannabis sativa HOM05D004936 ORTHO05D005977 1.0e-53 213.8 146 70.5
Lj3g0015200 Lotus japonicus HOM05D004936 ORTHO05D005977 1.8e-53 213.0 175 64.0
VMungo1127G0545 Vigna mungo HOM05D004936 ORTHO05D005977 1.8e-53 213.0 169 62.7
Actinidia23210 Actinidia chinensis HOM05D004936 ORTHO05D005977 3.0e-53 212.2 170 64.7
DCAR_018221 Daucus carota HOM05D004936 ORTHO05D005977 3.0e-53 212.2 146 71.2
HPP92_003695 Vanilla planifolia HOM05D004936 ORTHO05D005977 3.0e-53 212.2 164 64.6
Duzib084G0838 Durio zibethinus HOM05D004936 ORTHO05D005977 4.0e-53 211.8 166 63.9
Psat7g170640 Pisum sativum HOM05D004936 ORTHO05D005977 4.0e-53 211.8 146 69.2
Peaxi162Scf00624g00914 Petunia axillaris HOM05D004936 ORTHO05D005977 5.2e-53 211.5 165 65.5
Phvul.011G019700 Phaseolus vulgaris HOM05D004936 ORTHO05D005977 6.8e-53 211.1 169 62.1
ECA238G2024 Erigeron canadensis HOM05D004936 ORTHO05D005977 8.9e-53 210.7 160 63.8
Lj2A1091T51 Lonicera japonica HOM05D004936 ORTHO05D005977 1.2e-52 210.3 146 69.2
Nitab4.5_0000570g0350 Nicotiana tabacum HOM05D004936 ORTHO05D005977 1.2e-52 210.3 151 69.5
Nitab4.5_0002493g0030 Nicotiana tabacum HOM05D004936 ORTHO05D005977 1.2e-52 210.3 166 66.3
Nitab4.5_0000158g0090 Nicotiana tabacum HOM05D004936 ORTHO05D005977 2.6e-52 209.1 166 65.7
COL.COLO4_31393 Corchorus olitorius HOM05D004936 ORTHO05D005977 4.4e-52 208.4 166 59.6
Glyma.09G223900 Glycine max HOM05D004936 ORTHO05D005977 4.4e-52 208.4 168 63.7
Glyma.12G017200 Glycine max HOM05D004936 ORTHO05D005977 7.5e-52 207.6 168 63.7
Prupe.6G051100 Prunus persica HOM05D004936 ORTHO05D005977 9.8e-52 207.2 146 68.5
CiPaw.14G055600 Carya illinoinensis HOM05D004936 ORTHO05D005977 6.4e-51 204.5 141 70.9
TPR.G39486 Trifolium pratense HOM05D004936 ORTHO05D005977 6.4e-51 204.5 146 67.1
Cc05_g03440 Coffea canephora HOM05D004936 ORTHO05D005977 1.1e-50 203.8 169 59.8
MSTRG.4026 Avicennia marina HOM05D004936 ORTHO05D005977 1.4e-50 203.4 147 66.7
SMO353G0176 Selaginella moellendorffii HOM05D004936 ORTHO05D005977 1.8e-50 203.0 166 60.2
SGA_v2.0_scaffold39G15257 Striga asiatica HOM05D004936 ORTHO05D005977 1.8e-50 203.0 170 58.8
CsaV3_1G036620 Cucumis sativus L. HOM05D004936 ORTHO05D005977 2.4e-50 202.6 168 62.5
vmacro02929 Vaccinium macrocarpon HOM05D004936 ORTHO05D005977 4.1e-50 201.8 216 50.0
PGR044G1703 Punica granatum HOM05D004936 ORTHO05D005977 5.4e-50 201.4 174 59.2
MELO3C020507.2 Cucumis melo HOM05D004936 ORTHO05D005977 1.2e-49 200.3 174 59.8
Thecc.03G057900 Theobroma cacao HOM05D004936 ORTHO05D005977 1.2e-49 200.3 166 61.4
TWI75G1184 Tripterygium wilfordii HOM05D004936 ORTHO05D005977 1.3e-48 196.8 165 60.0
Nn2g10980 Nelumbo nucifera HOM05D004936 ORTHO05D005977 8.6e-48 194.1 150 65.3
TWI79G0082 Tripterygium wilfordii HOM05D004936 ORTHO05D005977 8.6e-48 194.1 165 58.8
Mapoly0036s0081 Marchantia polymorpha HOM05D004936 ORTHO05D005977 4.3e-47 191.8 151 62.3
Pp3c12_17590 Physcomitrium patens HOM05D004936 ORTHO05D005977 1.6e-46 189.9 162 56.2
Sabra16G0174900 Salix brachista HOM05D004936 ORTHO05D005977 1.0e-45 187.2 149 61.7
Zm00001eb130910 Zea mays HOM05D004936 ORTHO05D005977 5.2e-45 184.9 97 95.9
Zm00001eb223780 Zea mays HOM05D004936 ORTHO05D005977 2.0e-44 183.0 97 94.8
MD11G1063700 Malus domestica HOM05D004936 ORTHO05D005977 4.4e-44 181.8 135 65.9
Cpa.g.sc2.381 Carica papaya HOM05D004936 ORTHO05D005977 2.2e-43 179.5 142 64.8
Sc12g0000320 Simmondsia chinensis HOM05D004936 ORTHO05D005977 2.9e-43 179.1 116 74.1
ClCG03G000300 Citrullus lanatus HOM05D000089 ORTHO05D000104 4.9e-43 178.3 149 63.1
ATR0691G226 Amborella trichopoda HOM05D004936 ORTHO05D005977 2.4e-42 176.0 162 59.3
CAN.G3648.1 Capsicum annuum HOM05D004936 ORTHO05D005977 3.2e-42 175.6 145 66.2
CAN.G689.18 Capsicum annuum HOM05D004936 ORTHO05D005977 3.2e-42 175.6 145 66.2
COL.COLO4_04994 Corchorus olitorius HOM05D000034 ORTHO05D000037 2.7e-41 172.6 126 65.1
Haze_24392 Corylus avellana HOM05D004936 ORTHO05D005977 1.3e-40 170.2 143 61.5
SEGI_35825 Sequoiadendron giganteum HOM05D004936 ORTHO05D005977 1.3e-40 170.2 107 75.7
AagrBONN_evm.TU.Sc2ySwM_344.4538 Anthoceros agrestis HOM05D004936 ORTHO05D005977 1.5e-39 166.8 163 53.4
Nitab4.5_0003484g0120 Nicotiana tabacum HOM05D004936 ORTHO05D005977 1.5e-39 166.8 126 68.3
DCAR_027925 Daucus carota HOM05D004936 ORTHO05D005977 1.9e-39 166.4 127 63.0
MD03G1061000 Malus domestica HOM05D004936 ORTHO05D005977 1.2e-38 163.7 119 67.2
Ca_18959_v3 Cicer arietinum L. HOM05D000232 ORTHO05D000145 3.6e-38 162.2 143 58.0
Cfa011755 Carpinus fangiana HOM05D000089 ORTHO05D000104 4.7e-38 161.8 140 60.0
Oeu011630.1 Olea europaea HOM05D004936 ORTHO05D005977 8.9e-37 157.5 141 58.2
Lj1A128T43 Lonicera japonica HOM05D004936 ORTHO05D005977 2.6e-36 156.0 120 65.0
CBR_g19040 Chara braunii HOM05D004936 ORTHO05D005977 3.4e-36 155.6 155 49.7
Oeu023392.2 Olea europaea HOM05D004936 ORTHO05D005977 7.5e-36 154.5 138 60.1
AT3G10110 Arabidopsis thaliana HOM05D004936 ORTHO05D005977 4.9e-35 151.8 120 64.2
Nn5g31489 Nelumbo nucifera HOM05D004936 ORTHO05D005977 3.2e-34 149.1 124 61.3
Nn6g34585 Nelumbo nucifera HOM05D004936 ORTHO05D005977 3.2e-34 149.1 124 61.3
TPR.G26511 Trifolium pratense HOM05D004936 ORTHO05D005977 1.5e-31 140.2 96 68.8
Sed0020346 Sechium edule HOM05D004936 ORTHO05D005977 2.3e-29 132.9 162 48.1
Cre01.g021050 Chlamydomonas reinhardtii HOM05D004936 ORTHO05D005977 3.1e-29 132.5 151 46.4
Dinv09657 Davidia involucrata HOM05D004936 ORTHO05D005977 8.4e-27 124.4 79 75.9
CANSAT21G2196 Cannabis sativa HOM05D004936 ORTHO05D005977 1.1e-26 124.0 89 67.4
PRCOL_00001564 Prasinoderma coloniale HOM05D004936 ORTHO05D005977 3.5e-25 119.0 151 43.7
MCO05G723 Micromonas commoda HOM05D004936 ORTHO05D005977 1.1e-23 114.0 146 44.5
TAR633G2185 Trochodendron aralioides HOM05D004936 ORTHO05D005977 3.3e-23 112.5 114 53.5
MD11G1064200 Malus domestica HOM05D004936 ORTHO05D005977 4.0e-21 105.5 64 75.0
Cfa023961 Carpinus fangiana HOM05D004936 ORTHO05D005977 9.9e-20 100.9 139 40.3
MD11G1064100 Malus domestica HOM05D004936 ORTHO05D005977 2.7e-17 92.8 62 66.1
Nitab4.5_0001270g0210 Nicotiana tabacum HOM05D004936 ORTHO05D005977 5.1e-16 88.6 87 57.5
Dinv09658 Davidia involucrata HOM05D004936 ORTHO05D005977 2.7e-09 66.2 75 45.3
SEGI_05638 Sequoiadendron giganteum HOM05D004024 ORTHO05D004639 3.5e-09 65.9 136 32.4
Rhsim06G0225900 Rhododendron simsii HOM05D004024 ORTHO05D004639 6.7e-08 61.6 69 47.8
TPR.G21432 Trifolium pratense HOM05D004936 ORTHO05D005977 6.7e-08 61.6 83 39.8
ATR0712G010 Amborella trichopoda HOM05D004024 ORTHO05D004639 8.7e-08 61.2 67 47.8
TPR.G39290 Trifolium pratense HOM05D004936 ORTHO05D005977 8.7e-08 61.2 31 83.9
Nn6g32762 Nelumbo nucifera HOM05D004936 ORTHO05D005977 1.5e-07 60.5 29 82.8
vmacro11567 Vaccinium macrocarpon HOM05D004024 ORTHO05D004639 1.9e-07 60.1 69 46.4
MD05G1160000 Malus domestica HOM05D004936 ORTHO05D005977 2.5e-07 59.7 32 78.1
DCAR_027921 Daucus carota HOM05D004936 ORTHO05D005977 3.3e-07 59.3 39 61.5
Lalb_Chr06g0174041 Lupinus albus HOM05D004024 ORTHO05D004639 4.3e-07 58.9 67 44.8
Medtr2g070300 Medicago truncatula HOM05D004936 ORTHO05D005977 4.3e-07 58.9 30 86.7
CBR_g19503 Chara braunii HOM05D004024 ORTHO05D004639 5.6e-07 58.5 166 28.9
PSO210G2058 Papaver somniferum HOM05D004024 ORTHO05D004639 5.6e-07 58.5 74 44.6
PSO302G0156 Papaver somniferum HOM05D004024 ORTHO05D004639 5.6e-07 58.5 74 44.6
unitig_85.g27339 Utricularia gibba HOM05D004024 ORTHO05D004639 9.6e-07 57.8 74 41.9
AUR62015937 Chenopodium quinoa HOM05D004024 ORTHO05D004639 1.3e-06 57.4 120 33.3
Psat0s4319g0040 Pisum sativum HOM05D004024 ORTHO05D004639 4.8e-06 55.5 67 41.8


User provided reference genes

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