Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb013500 Zea mays HOM05D007292 ORTHO05D009084 4.1e-134 481.5 259 100.0
Os03g0293100 Oryza sativa ssp. japonica HOM05D007292 ORTHO05D009084 3.7e-50 202.6 276 53.6
PGR044G1044 Punica granatum HOM05D007292 ORTHO05D009084 7.4e-35 151.8 187 51.3
Cc08_g07220 Coffea canephora HOM05D007292 ORTHO05D009084 8.2e-34 148.3 129 61.2
Actinidia00958 Actinidia chinensis HOM05D007292 ORTHO05D009084 1.8e-33 147.1 233 46.8
SalBow5G0252 Salvia bowleyana HOM05D007292 ORTHO05D009084 1.8e-33 147.1 142 56.3
Duzib114G0074 Durio zibethinus HOM05D007292 ORTHO05D009084 1.6e-32 144.1 129 59.7
Actinidia13950 Actinidia chinensis HOM05D007292 ORTHO05D009084 2.0e-32 143.7 187 50.3
Nitab4.5_0000487g0050 Nicotiana tabacum HOM05D007292 ORTHO05D009084 2.0e-32 143.7 140 55.7
Nitab4.5_0002701g0020 Nicotiana tabacum HOM05D007292 ORTHO05D009084 2.0e-32 143.7 157 53.5
Thecc.10G013900 Theobroma cacao HOM05D007292 ORTHO05D009084 2.0e-32 143.7 163 53.4
SalBow5G4600 Salvia bowleyana HOM05D007292 ORTHO05D009084 2.6e-32 143.3 172 49.4
Haze_17244 Corylus avellana HOM05D004762 ORTHO05D005972 4.5e-32 142.5 130 59.2
Sopen03g026090 Solanum pennellii HOM05D007292 ORTHO05D009084 4.5e-32 142.5 162 50.0
Peaxi162Scf00484g00003 Petunia axillaris HOM05D007292 ORTHO05D009084 5.9e-32 142.1 204 45.6
Solyc03g095990.1 Solanum lycopersicum HOM05D007292 ORTHO05D009084 5.9e-32 142.1 162 50.0
PGSC0003DMG400027726 Solanum tuberosum HOM05D007292 ORTHO05D009084 1.3e-31 141.0 164 50.0
CiPaw.01G300300 Carya illinoinensis HOM05D007292 ORTHO05D009084 3.8e-31 139.4 130 59.2
THA.LOC104824327 Tarenaya hassleriana HOM05D007292 ORTHO05D009084 3.8e-31 139.4 128 60.2
Eucgr.J00191 Eucalyptus grandis HOM05D007292 ORTHO05D009084 5.0e-31 139.0 160 54.4
AL5G37290 Arabidopsis lyrata HOM05D007292 ORTHO05D009084 8.5e-31 138.3 147 53.1
GSVIVG01032790001 Vitis vinifera HOM05D007292 ORTHO05D009084 8.5e-31 138.3 139 56.8
CSS0010989 Camellia sinensis var. sinensis HOM05D007292 ORTHO05D009084 1.1e-30 137.9 196 46.4
Carub.0005s2275 Capsella rubella HOM05D007292 ORTHO05D009084 1.1e-30 137.9 153 51.6
Hund13879 Selenicereus undatus HOM05D007292 ORTHO05D009084 1.1e-30 137.9 175 48.6
AT3G56010 Arabidopsis thaliana HOM05D007292 ORTHO05D009084 1.5e-30 137.5 157 50.3
Potri.008G070700 Populus trichocarpa HOM05D007292 ORTHO05D009084 1.5e-30 137.5 170 49.4
C04p36460 Brassica napus HOM05D007292 ORTHO05D009084 1.9e-30 137.1 134 55.2
BolC4t25149H Brassica oleracea HOM05D007292 ORTHO05D009084 1.9e-30 137.1 134 55.2
CARHR166090 Cardamine hirsuta HOM05D007292 ORTHO05D009084 2.5e-30 136.7 155 49.7
BraA04t16126Z Brassica rapa HOM05D007292 ORTHO05D009084 3.2e-30 136.3 145 53.8
Aqoxy6G01833 Aquilegia oxysepala HOM05D007292 ORTHO05D009084 4.2e-30 136.0 157 53.5
BcaC02g09799 Brassica carinata HOM05D007292 ORTHO05D009084 5.5e-30 135.6 134 54.5
TWI53G0916 Tripterygium wilfordii HOM05D007292 ORTHO05D009084 5.5e-30 135.6 230 42.2
QL08p063404 Quercus lobata HOM05D007292 ORTHO05D009084 7.2e-30 135.2 163 50.3
Potri.010G186800 Populus trichocarpa HOM05D007292 ORTHO05D009084 9.4e-30 134.8 209 45.5
THA.LOC104811239 Tarenaya hassleriana HOM05D007292 ORTHO05D009084 1.2e-29 134.4 156 53.2
Manes.07G131600 Manihot esculenta HOM05D007292 ORTHO05D009084 1.6e-29 134.0 199 45.2
Lalb_Chr08g0231651 Lupinus albus HOM05D007292 ORTHO05D009084 2.1e-29 133.7 147 53.1
Sabra08G0052000 Salix brachista HOM05D007292 ORTHO05D009084 2.1e-29 133.7 209 46.4
Sc10g0002470 Simmondsia chinensis HOM05D007292 ORTHO05D009084 2.1e-29 133.7 149 54.4
EL10Ac2g04856 Beta vulgaris HOM05D007292 ORTHO05D009084 2.7e-29 133.3 155 50.3
BcaB01g00041 Brassica carinata HOM05D007292 ORTHO05D009084 2.7e-29 133.3 144 50.7
Lj6g0005846 Lotus japonicus HOM05D007292 ORTHO05D009084 2.7e-29 133.3 144 53.5
Sp5g06520 Schrenkiella parvula HOM05D007292 ORTHO05D009084 3.6e-29 132.9 170 47.1
A04p04080 Brassica napus HOM05D007292 ORTHO05D009084 6.1e-29 132.1 142 51.4
A09p48960 Brassica napus HOM05D007292 ORTHO05D009084 8.0e-29 131.7 127 54.3
C08p31330 Brassica napus HOM05D007292 ORTHO05D009084 8.0e-29 131.7 127 54.3
BolC8t50754H Brassica oleracea HOM05D007292 ORTHO05D009084 8.0e-29 131.7 127 54.3
BraA09t40351Z Brassica rapa HOM05D007292 ORTHO05D009084 8.0e-29 131.7 127 54.3
AUR62022909 Chenopodium quinoa HOM05D007292 ORTHO05D009084 8.0e-29 131.7 170 48.2
MELO3C018364.2 Cucumis melo HOM05D007292 ORTHO05D009084 8.0e-29 131.7 201 42.8
ATR0681G254 Amborella trichopoda HOM05D007292 ORTHO05D009084 1.0e-28 131.3 176 47.7
CANSAT56G1912 Cannabis sativa HOM05D007292 ORTHO05D009084 1.0e-28 131.3 140 52.1
CsaV3_5G010290 Cucumis sativus L. HOM05D007292 ORTHO05D009084 1.0e-28 131.3 201 42.8
Gohir.A05G330800 Gossypium hirsutum HOM05D007292 ORTHO05D009084 1.4e-28 131.0 160 50.6
Medtr3g070960 Medicago truncatula HOM05D007292 ORTHO05D009084 1.4e-28 131.0 169 47.9
Thhalv10006239m.g Eutrema salsugineum HOM05D007292 ORTHO05D009084 1.8e-28 130.6 157 47.1
Gorai.012G078000 Gossypium raimondii HOM05D007292 ORTHO05D009084 1.8e-28 130.6 160 50.6
HanXRQChr14g0459531 Helianthus annuus HOM05D007292 ORTHO05D009084 3.0e-28 129.8 140 53.6
Ciclev10032544m.g Citrus clementina HOM05D007292 ORTHO05D009084 4.0e-28 129.4 247 40.5
Cfa001300 Carpinus fangiana HOM05D007292 ORTHO05D009084 8.8e-28 128.3 229 41.0
Lsat_1_v5_gn_2_124081 Lactuca sativa HOM05D007292 ORTHO05D009084 8.8e-28 128.3 248 41.5
TAR633G2478 Trochodendron aralioides HOM05D007292 ORTHO05D009084 8.8e-28 128.3 218 42.7
Aa31LG10G10950 Aethionema arabicum HOM05D007292 ORTHO05D009084 1.2e-27 127.9 169 46.2
ECA238G0254 Erigeron canadensis HOM05D007292 ORTHO05D009084 1.2e-27 127.9 184 45.1
vmacro10031 Vaccinium macrocarpon HOM05D007292 ORTHO05D009084 1.2e-27 127.9 195 46.2
Ah.16g103670 Amaranthus hybridus HOM05D007292 ORTHO05D009084 3.4e-27 126.3 207 42.5
Dinv10605 Davidia involucrata HOM05D007292 ORTHO05D009084 3.4e-27 126.3 202 46.5
arahy.Tifrunner.gnm1.ann1.RI3S0A Arachis hypogaea HOM05D007292 ORTHO05D009084 5.7e-27 125.6 173 47.4
arahy.Tifrunner.gnm1.ann1.W7USAB Arachis hypogaea HOM05D007292 ORTHO05D009084 5.7e-27 125.6 177 46.3
TWI09G0172 Tripterygium wilfordii HOM05D007292 ORTHO05D009084 5.7e-27 125.6 208 42.8
Hma1.2p1_0145F.1_g065370 Hydrangea macrophylla HOM05D007292 ORTHO05D009084 7.5e-27 125.2 121 56.2
Hma1.2p1_2705F.1_g327175 Hydrangea macrophylla HOM05D007292 ORTHO05D009084 7.5e-27 125.2 121 56.2
RcHm_v2.0_Chr1g0370551 Rosa chinensis HOM05D007292 ORTHO05D009084 7.5e-27 125.2 129 54.3
Rhsim09G0178500 Rhododendron simsii HOM05D007292 ORTHO05D009084 1.3e-26 124.4 198 45.5
MD07G1224000 Malus domestica HOM05D007292 ORTHO05D009084 2.8e-26 123.2 127 54.3
DCAR_011829 Daucus carota HOM05D007292 ORTHO05D009084 3.7e-26 122.9 131 52.7
Gohir.D04G069400 Gossypium hirsutum HOM05D007292 ORTHO05D009084 3.7e-26 122.9 209 42.6
Sed0024586 Sechium edule HOM05D007292 ORTHO05D009084 4.8e-26 122.5 246 36.6
ClCG07G004350 Citrullus lanatus HOM05D007292 ORTHO05D009084 3.1e-25 119.8 179 44.1
Psat5g129440 Pisum sativum HOM05D007292 ORTHO05D009084 3.1e-25 119.8 185 43.2
Prupe.2G252500 Prunus persica HOM05D007292 ORTHO05D009084 3.1e-25 119.8 210 41.0
Migut.F01485 Erythranthe guttata HOM05D007292 ORTHO05D009084 4.1e-25 119.4 203 40.9
PSO384G0417 Papaver somniferum HOM05D007292 ORTHO05D009084 4.1e-25 119.4 181 43.6
MD01G1154900 Malus domestica HOM05D007292 ORTHO05D009084 9.1e-25 118.2 193 43.5
TPR.G11203 Trifolium pratense HOM05D007292 ORTHO05D009084 1.2e-24 117.9 199 40.2
FAN01G0766 Fragaria x ananassa HOM05D007292 ORTHO05D009084 2.7e-24 116.7 213 39.9
Cpa.g.sc19.157 Carica papaya HOM05D007292 ORTHO05D009084 5.9e-24 115.5 209 41.1
TAR636G1797 Trochodendron aralioides HOM05D007292 ORTHO05D009084 1.0e-23 114.8 151 49.0
Atru.chr12.94 Acer truncatum HOM05D007292 ORTHO05D009084 2.2e-23 113.6 193 40.9
FvH4_7g24710 Fragaria vesca HOM05D007292 ORTHO05D009084 3.8e-23 112.8 201 41.3
FAN03G0495 Fragaria x ananassa HOM05D004762 ORTHO05D005972 3.8e-23 112.8 201 41.3
FAN06G1000 Fragaria x ananassa HOM05D007292 ORTHO05D009084 3.8e-23 112.8 201 41.3
FAN10G1098 Fragaria x ananassa HOM05D007292 ORTHO05D009084 5.0e-23 112.5 201 41.3
Glyma.18G025900 Glycine max HOM05D007292 ORTHO05D009084 1.1e-22 111.3 164 44.5
Glyma.11G231200 Glycine max HOM05D007292 ORTHO05D009084 1.5e-22 110.9 188 43.1
Phvul.001G244400 Phaseolus vulgaris HOM05D007292 ORTHO05D009084 2.5e-22 110.2 151 46.4
VMungo1383G3483 Vigna mungo HOM05D001399 ORTHO05D001670 7.2e-22 108.6 265 36.2
COL.COLO4_25767 Corchorus olitorius HOM05D004762 ORTHO05D005972 3.4e-19 99.8 93 62.4
Ca_15135_v3 Cicer arietinum L. HOM05D007292 ORTHO05D009084 4.4e-19 99.4 182 40.7
SGA_v2.0_scaffold378G50330 Striga asiatica HOM05D007292 ORTHO05D009084 6.3e-18 95.5 172 41.3
Sabra10G0144000 Salix brachista HOM05D007292 ORTHO05D009084 2.4e-17 93.6 133 47.4
Hma1.2p1_2705F.1_g327170 Hydrangea macrophylla HOM05D001399 ORTHO05D001670 4.1e-17 92.8 177 43.5
BcaB02g08388 Brassica carinata HOM05D007292 ORTHO05D009084 5.4e-17 92.4 90 52.2
Nn2g13181 Nelumbo nucifera HOM05D007292 ORTHO05D009084 4.5e-16 89.4 149 45.6
SEGI_20884 Sequoiadendron giganteum HOM05D007292 ORTHO05D009084 1.9e-14 84.0 229 33.6
CDE04G1468 Ceratophyllum demersum HOM05D000652 ORTHO05D009084 6.1e-13 79.0 95 48.4


User provided reference genes

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