Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb013150 Zea mays HOM05D007819 ORTHO05D009848 2.1e-157 558.9 273 100.0
Nn2g10668 Nelumbo nucifera HOM05D007819 ORTHO05D009848 1.3e-90 337.0 258 62.8
HPP92_025075 Vanilla planifolia HOM05D007819 ORTHO05D009848 2.9e-90 335.9 272 57.4
Cpa.g.sc318.6 Carica papaya HOM05D007819 ORTHO05D009848 1.0e-87 327.4 275 57.1
PSO339G1273 Papaver somniferum HOM05D007819 ORTHO05D009848 1.8e-87 326.6 261 59.8
PSO384G2242 Papaver somniferum HOM05D007819 ORTHO05D009848 6.8e-87 324.7 261 59.8
Thecc.09G261200 Theobroma cacao HOM05D007819 ORTHO05D009848 6.8e-87 324.7 258 60.9
Manes.04G025500 Manihot esculenta HOM05D007819 ORTHO05D009848 1.5e-86 323.6 258 60.5
Atru.chr3.3713 Acer truncatum HOM05D007819 ORTHO05D009848 2.6e-86 322.8 274 56.6
TAR623G0280 Trochodendron aralioides HOM05D007819 ORTHO05D009848 3.4e-86 322.4 259 59.8
Gohir.A09G105900 Gossypium hirsutum HOM05D007819 ORTHO05D009848 1.7e-85 320.1 258 59.7
Gorai.006G121000 Gossypium raimondii HOM05D007819 ORTHO05D009848 4.8e-85 318.5 258 59.7
PGR102G1079 Punica granatum HOM05D007819 ORTHO05D009848 8.3e-85 317.8 267 58.1
CANSAT54G2163 Cannabis sativa HOM05D007819 ORTHO05D009848 1.4e-84 317.0 259 59.5
RcHm_v2.0_Chr5g0060991 Rosa chinensis HOM05D007819 ORTHO05D009848 1.4e-84 317.0 254 58.7
FAN21G3467 Fragaria x ananassa HOM05D007819 ORTHO05D009848 9.1e-84 314.3 251 58.6
CiPaw.13G106200 Carya illinoinensis HOM05D007819 ORTHO05D009848 1.2e-83 313.9 254 59.1
Duzib168G1088 Durio zibethinus HOM05D007819 ORTHO05D009848 2.7e-83 312.8 273 56.8
Gohir.D09G102600 Gossypium hirsutum HOM05D007819 ORTHO05D009848 3.5e-83 312.4 247 60.7
TWI75G0698 Tripterygium wilfordii HOM05D007819 ORTHO05D009848 3.5e-83 312.4 249 60.2
Eucgr.B02464 Eucalyptus grandis HOM05D007819 ORTHO05D009848 5.9e-83 311.6 247 58.3
Sopen06g001100 Solanum pennellii HOM05D007819 ORTHO05D009848 5.9e-83 311.6 256 58.2
FAN25G2530 Fragaria x ananassa HOM05D007819 ORTHO05D009848 2.3e-82 309.7 251 57.4
COL.COLO4_25254 Corchorus olitorius HOM05D007819 ORTHO05D009848 3.8e-82 308.9 248 59.3
Gohir.D05G077600 Gossypium hirsutum HOM05D007819 ORTHO05D009848 8.6e-82 307.8 258 56.2
Gorai.009G079100 Gossypium raimondii HOM05D007819 ORTHO05D009848 8.6e-82 307.8 258 56.2
Oeu017391.1 Olea europaea HOM05D007819 ORTHO05D009848 2.5e-81 306.2 270 53.3
Gohir.A05G074800 Gossypium hirsutum HOM05D007819 ORTHO05D009848 9.5e-81 304.3 258 55.8
MD11G1124900 Malus domestica HOM05D007819 ORTHO05D009848 1.2e-80 303.9 246 57.3
MD03G1111000 Malus domestica HOM05D007819 ORTHO05D009848 4.7e-80 302.0 246 58.1
Lsat_1_v5_gn_2_25861 Lactuca sativa HOM05D007819 ORTHO05D009848 1.4e-79 300.4 241 59.3
QL01p036876 Quercus lobata HOM05D007819 ORTHO05D009848 2.3e-79 299.7 255 57.6
Gohir.A05G074866 Gossypium hirsutum HOM05D007819 ORTHO05D009848 6.8e-79 298.1 258 54.7
Hma1.2p1_2033F.1_g311900 Hydrangea macrophylla HOM05D007819 ORTHO05D009848 2.6e-78 296.2 245 57.1
Migut.N02626 Erythranthe guttata HOM05D007819 ORTHO05D009848 3.4e-78 295.8 272 51.1
CiPaw.14G077700 Carya illinoinensis HOM05D007819 ORTHO05D009848 2.8e-77 292.7 260 56.9
Cc01_g11630 Coffea canephora HOM05D007819 ORTHO05D009848 9.2e-76 287.7 244 55.3
Nitab4.5_0000888g0180 Nicotiana tabacum HOM05D007819 ORTHO05D009848 1.6e-75 287.0 273 52.7
Nitab4.5_0007369g0010 Nicotiana tabacum HOM05D007819 ORTHO05D009848 8.6e-74 281.2 280 50.4
CiPaw.13G106300 Carya illinoinensis HOM05D007819 ORTHO05D009848 3.6e-72 275.8 248 53.6
CiPaw.14G077600 Carya illinoinensis HOM05D007819 ORTHO05D009848 6.1e-72 275.0 261 52.9
FAN16G1444 Fragaria x ananassa HOM05D007819 ORTHO05D009848 1.0e-71 274.2 325 44.3
AUR62006507 Chenopodium quinoa HOM05D007819 ORTHO05D009848 3.1e-71 272.7 274 50.7
Mapoly0103s0031 Marchantia polymorpha HOM05D007819 ORTHO05D009848 1.4e-68 263.8 256 50.0
DCAR_005475 Daucus carota HOM05D007819 ORTHO05D009848 4.1e-68 262.3 219 56.2
unitig_699.g19198 Utricularia gibba HOM05D007819 ORTHO05D009848 5.4e-68 261.9 269 48.3
FvH4_3g33520 Fragaria vesca HOM05D007819 ORTHO05D009848 6.6e-66 255.0 212 58.0
Sc21g0003720 Simmondsia chinensis HOM05D007819 ORTHO05D009848 5.6e-65 251.9 222 57.7
Lj1A183T52 Lonicera japonica HOM05D007819 ORTHO05D009848 1.8e-63 246.9 253 49.8
Peaxi162Scf00389g00619 Petunia axillaris HOM05D007819 ORTHO05D009848 7.5e-62 241.5 251 49.4
Haze_23935 Corylus avellana HOM05D007819 ORTHO05D009848 2.1e-56 223.4 216 52.3
Ciclev10029813m.g Citrus clementina HOM05D007819 ORTHO05D009848 6.2e-56 221.9 251 46.2
Pp3c21_1570 Physcomitrium patens HOM05D007819 ORTHO05D009848 4.0e-55 219.2 258 43.4
Prupe.6G093600 Prunus persica HOM05D007819 ORTHO05D009848 4.4e-54 215.7 170 58.2
Nitab4.5_0001578g0010 Nicotiana tabacum HOM05D007819 ORTHO05D009848 5.8e-54 215.3 233 48.5
Pp3c15_22830 Physcomitrium patens HOM05D007819 ORTHO05D009848 2.2e-53 213.4 284 40.1
Solyc06g005100.3 Solanum lycopersicum HOM05D007819 ORTHO05D009848 8.3e-53 211.5 172 56.4
Mapoly0155s0016 Marchantia polymorpha HOM05D007819 ORTHO05D009848 1.1e-52 211.1 257 42.4
Nitab4.5_0000022g0250 Nicotiana tabacum HOM05D007819 ORTHO05D009848 3.5e-51 206.1 215 50.7
Pp3c9_23950 Physcomitrium patens HOM05D007819 ORTHO05D009848 3.5e-51 206.1 257 40.9
AagrBONN_evm.TU.Sc2ySwM_344.1297 Anthoceros agrestis HOM05D007819 ORTHO05D009848 4.6e-51 205.7 257 41.6
CAN.G1171.1 Capsicum annuum HOM05D007819 ORTHO05D009848 3.9e-50 202.6 240 45.0
AagrBONN_evm.TU.Sc2ySwM_344.3840 Anthoceros agrestis HOM05D007819 ORTHO05D009848 1.5e-49 200.7 288 38.5
Dinv32800 Davidia involucrata HOM05D007819 ORTHO05D009848 1.9e-49 200.3 188 50.5
Mapoly0035s0019 Marchantia polymorpha HOM05D007819 ORTHO05D009848 2.5e-49 199.9 257 40.5
SGA_v2.0_scaffold2G00920 Striga asiatica HOM05D007819 ORTHO05D009848 4.3e-49 199.1 231 44.2
Mapoly0008s0213 Marchantia polymorpha HOM05D007819 ORTHO05D009848 7.3e-49 198.4 269 39.4
GSVIVG01025124001 Vitis vinifera HOM05D007819 ORTHO05D009848 2.8e-48 196.4 157 59.9
MSTRG.12613 Avicennia marina HOM05D007819 ORTHO05D009848 2.1e-43 180.3 155 53.5
Os03g0287100 Oryza sativa ssp. japonica HOM05D007819 ORTHO05D009848 3.9e-42 176.0 100 87.0
PGSC0003DMG401025397 Solanum tuberosum HOM05D007819 ORTHO05D009848 2.1e-40 170.2 154 54.5
Pp3c3_24540 Physcomitrium patens HOM05D007819 ORTHO05D009848 1.8e-39 167.2 261 35.2
Mapoly0088s0067 Marchantia polymorpha HOM05D000370 ORTHO05D001335 6.9e-39 165.2 261 34.5
AUR62025022 Chenopodium quinoa HOM05D007819 ORTHO05D009848 2.6e-38 163.3 209 41.6
Pp3c12_18930 Physcomitrium patens HOM05D000370 ORTHO05D009848 4.4e-38 162.5 258 34.9
Pp3c12_18938 Physcomitrium patens HOM05D000370 ORTHO05D009848 4.4e-38 162.5 258 34.9
Migut.O00707 Erythranthe guttata HOM05D007819 ORTHO05D009848 3.8e-37 159.5 134 50.7
EL10Ac9g22426 Beta vulgaris HOM05D007819 ORTHO05D009848 1.3e-34 151.0 116 59.5
SalBow3G4000 Salvia bowleyana HOM05D007819 ORTHO05D009848 5.4e-28 129.0 108 55.6
QL01p036758 Quercus lobata HOM05D007819 ORTHO05D009848 5.6e-25 119.0 91 61.5
MSTRG.12612 Avicennia marina HOM05D007819 ORTHO05D009848 2.8e-24 116.7 98 54.1
QL01p036766 Quercus lobata HOM05D007819 ORTHO05D009848 1.5e-22 110.9 100 53.0
Oeu012676.1 Olea europaea HOM05D007819 ORTHO05D009848 2.1e-19 100.5 73 57.5
CSS0001112 Camellia sinensis var. sinensis HOM05D007819 ORTHO05D009848 2.7e-19 100.1 98 49.0
CSS0025937 Camellia sinensis var. sinensis HOM05D007819 ORTHO05D009848 2.7e-19 100.1 98 49.0
EL10Ac9g22427 Beta vulgaris HOM05D007819 ORTHO05D009848 2.1e-16 90.5 118 43.2
FAN11G3664 Fragaria x ananassa HOM05D007819 ORTHO05D009848 1.5e-14 84.3 67 62.7


User provided reference genes

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