Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb013020 Zea mays HOM05D004659 ORTHO05D005547 3.2e-111 405.2 223 100.0
Zm00001eb397230 Zea mays HOM05D004659 ORTHO05D005547 2.9e-104 382.1 223 95.1
Os03g0284400 Oryza sativa ssp. japonica HOM05D004659 ORTHO05D005547 7.5e-92 340.9 225 85.8
PSO384G3929 Papaver somniferum HOM05D004659 ORTHO05D005547 2.2e-67 259.6 197 71.1
MBI05_g34749_MAGBIO Magnolia biondii HOM05D004659 ORTHO05D005547 2.9e-67 259.2 216 69.9
Atru.chr12.612 Acer truncatum HOM05D004659 ORTHO05D005547 1.1e-66 257.3 229 59.4
PSO339G6228 Papaver somniferum HOM05D004659 ORTHO05D005547 1.1e-66 257.3 197 71.1
Nitab4.5_0004104g0080 Nicotiana tabacum HOM05D004659 ORTHO05D005547 1.4e-66 256.9 189 66.1
Sabra10G0166900 Salix brachista HOM05D004659 ORTHO05D005547 1.4e-66 256.9 228 59.6
COL.COLO4_23776 Corchorus olitorius HOM05D004659 ORTHO05D005547 1.8e-66 256.5 229 65.9
Lsat_1_v5_gn_9_66541 Lactuca sativa HOM05D004659 ORTHO05D005547 1.8e-66 256.5 194 73.7
ClCG02G013790 Citrullus lanatus HOM05D004659 ORTHO05D005547 2.4e-66 256.1 225 63.1
Nitab4.5_0000691g0220 Nicotiana tabacum HOM05D004659 ORTHO05D005547 3.2e-66 255.8 227 58.6
Peaxi162Scf00195g00083 Petunia axillaris HOM05D004659 ORTHO05D005547 5.4e-66 255.0 199 62.8
RcHm_v2.0_Chr6g0287931 Rosa chinensis HOM05D004659 ORTHO05D005547 7.0e-66 254.6 220 67.3
CiPaw.02G177400 Carya illinoinensis HOM05D004659 ORTHO05D005547 9.2e-66 254.2 228 58.3
FAN24G1009 Fragaria x ananassa HOM05D004659 ORTHO05D005547 9.2e-66 254.2 199 71.9
Nn2g10610 Nelumbo nucifera HOM05D004659 ORTHO05D005547 1.2e-65 253.8 183 74.9
FvH4_2g21340 Fragaria vesca HOM05D004659 ORTHO05D005547 1.6e-65 253.4 216 68.5
Cpa.g.sc1.279 Carica papaya HOM05D004659 ORTHO05D005547 2.0e-65 253.1 190 69.5
CAN.G186.30 Capsicum annuum HOM05D004659 ORTHO05D005547 2.7e-65 252.7 199 62.8
Nn8g38769 Nelumbo nucifera HOM05D004659 ORTHO05D005547 2.7e-65 252.7 183 73.8
CsaV3_5G006380 Cucumis sativus L. HOM05D004659 ORTHO05D005547 3.5e-65 252.3 224 63.8
CANSAT35G1484 Cannabis sativa HOM05D004659 ORTHO05D005547 4.6e-65 251.9 184 69.6
TAR369G1054 Trochodendron aralioides HOM05D004659 ORTHO05D005547 4.6e-65 251.9 180 76.1
C09p63590 Brassica napus HOM05D004659 ORTHO05D005547 5.9e-65 251.5 195 69.2
Haze_22491 Corylus avellana HOM05D004659 ORTHO05D005547 5.9e-65 251.5 181 74.0
PGSC0003DMG400032570 Solanum tuberosum HOM05D004659 ORTHO05D005547 5.9e-65 251.5 199 61.8
MELO3C011720.2 Cucumis melo HOM05D004659 ORTHO05D005547 7.8e-65 251.1 222 64.4
Sed0009994 Sechium edule HOM05D004659 ORTHO05D005547 1.0e-64 250.8 193 67.9
Solyc04g009540.1 Solanum lycopersicum HOM05D004659 ORTHO05D005547 1.0e-64 250.8 199 61.8
Sopen04g004700 Solanum pennellii HOM05D004659 ORTHO05D005547 1.0e-64 250.8 199 61.8
Aqoxy4G03156 Aquilegia oxysepala HOM05D004659 ORTHO05D005547 1.7e-64 250.0 197 67.0
MD05G1196100 Malus domestica HOM05D004659 ORTHO05D005547 1.7e-64 250.0 186 70.4
BcaC04g19111 Brassica carinata HOM05D004659 ORTHO05D005547 2.3e-64 249.6 195 66.2
A10p24760 Brassica napus HOM05D004659 ORTHO05D005547 2.3e-64 249.6 195 68.7
BolC9t59202H Brassica oleracea HOM05D004659 ORTHO05D005547 2.3e-64 249.6 195 66.2
BraA10t44539Z Brassica rapa HOM05D004659 ORTHO05D005547 2.3e-64 249.6 195 68.7
Cfa013817 Carpinus fangiana HOM05D004659 ORTHO05D005547 2.3e-64 249.6 191 70.2
Gohir.A05G298900 Gossypium hirsutum HOM05D004659 ORTHO05D005547 3.0e-64 249.2 220 60.0
THA.LOC104799364 Tarenaya hassleriana HOM05D004659 ORTHO05D005547 3.0e-64 249.2 226 58.4
Thecc.10G065300 Theobroma cacao HOM05D004659 ORTHO05D005547 3.0e-64 249.2 230 63.5
Rhsim03G0135900 Rhododendron simsii HOM05D004659 ORTHO05D005547 3.9e-64 248.8 197 62.9
THA.LOC104827313 Tarenaya hassleriana HOM05D004659 ORTHO05D005547 3.9e-64 248.8 193 63.7
Potri.008G045800 Populus trichocarpa HOM05D004659 ORTHO05D005547 5.0e-64 248.4 227 57.7
Potri.010G215900 Populus trichocarpa HOM05D004659 ORTHO05D005547 5.0e-64 248.4 229 59.4
Sabra08G0032100 Salix brachista HOM05D004659 ORTHO05D005547 5.0e-64 248.4 229 59.0
Gorai.009G315800 Gossypium raimondii HOM05D004659 ORTHO05D005547 8.6e-64 247.7 220 59.5
CSS0038055 Camellia sinensis var. sinensis HOM05D004659 ORTHO05D005547 1.1e-63 247.3 182 65.9
Ciclev10032705m.g Citrus clementina HOM05D004659 ORTHO05D005547 1.1e-63 247.3 213 67.6
MD10G1183400 Malus domestica HOM05D004659 ORTHO05D005547 1.1e-63 247.3 217 63.6
PGR031G1734 Punica granatum HOM05D004659 ORTHO05D005547 1.1e-63 247.3 213 61.0
Glyma.17G075900 Glycine max HOM05D004659 ORTHO05D005547 1.5e-63 246.9 199 67.3
Prupe.8G222500 Prunus persica HOM05D004659 ORTHO05D005547 1.5e-63 246.9 208 64.9
QL08p057255 Quercus lobata HOM05D004659 ORTHO05D005547 1.5e-63 246.9 187 72.7
Gohir.D05G298600 Gossypium hirsutum HOM05D004659 ORTHO05D005547 1.9e-63 246.5 228 57.9
Lalb_Chr07g0179691 Lupinus albus HOM05D004659 ORTHO05D005547 1.9e-63 246.5 212 66.0
BolC2t06562H Brassica oleracea HOM05D004659 ORTHO05D005547 5.6e-63 245.0 210 64.8
Hma1.2p1_2685F.1_g326920 Hydrangea macrophylla HOM05D004659 ORTHO05D005547 5.6e-63 245.0 235 54.9
arahy.Tifrunner.gnm1.ann1.23T474 Arachis hypogaea HOM05D004659 ORTHO05D005547 7.3e-63 244.6 212 59.4
Thhalv10014625m.g Eutrema salsugineum HOM05D004659 ORTHO05D005547 7.3e-63 244.6 193 67.4
BcaNung01889 Brassica carinata HOM05D004659 ORTHO05D005547 9.5e-63 244.2 203 66.0
HanXRQChr09g0247171 Helianthus annuus HOM05D004659 ORTHO05D005547 9.5e-63 244.2 192 70.3
VMungo0464G0639 Vigna mungo HOM05D004659 ORTHO05D005547 9.5e-63 244.2 195 60.5
C02p06210 Brassica napus HOM05D004659 ORTHO05D005547 1.2e-62 243.8 203 66.0
Manes.07G069200 Manihot esculenta HOM05D004659 ORTHO05D005547 1.6e-62 243.4 227 60.8
Sp6g30510 Schrenkiella parvula HOM05D004659 ORTHO05D005547 1.6e-62 243.4 193 67.4
BraA02t05172Z Brassica rapa HOM05D004659 ORTHO05D005547 2.1e-62 243.0 203 65.5
Carub.0006s1167 Capsella rubella HOM05D004659 ORTHO05D005547 2.1e-62 243.0 193 65.8
Cc09_g02380 Coffea canephora HOM05D004659 ORTHO05D005547 2.1e-62 243.0 184 71.7
TWI38G0010 Tripterygium wilfordii HOM05D004659 ORTHO05D005547 2.1e-62 243.0 226 60.6
AL6G24130 Arabidopsis lyrata HOM05D004659 ORTHO05D005547 3.6e-62 242.3 203 60.1
Duzib106G0066 Durio zibethinus HOM05D004659 ORTHO05D005547 3.6e-62 242.3 229 60.7
CARHR199930 Cardamine hirsuta HOM05D004659 ORTHO05D005547 4.7e-62 241.9 193 61.7
vmacro04881 Vaccinium macrocarpon HOM05D004659 ORTHO05D005547 4.7e-62 241.9 214 59.3
Phvul.004G002100 Phaseolus vulgaris HOM05D004659 ORTHO05D005547 6.2e-62 241.5 195 59.5
AT5G13510 Arabidopsis thaliana HOM05D004659 ORTHO05D005547 8.0e-62 241.1 203 59.6
BcaNung01147 Brassica carinata HOM05D004659 ORTHO05D005547 8.0e-62 241.1 203 66.0
Ca_21106_v3 Cicer arietinum L. HOM05D004659 ORTHO05D005547 8.0e-62 241.1 206 58.3
Oeu017240.1 Olea europaea HOM05D004659 ORTHO05D005547 8.0e-62 241.1 202 58.9
ECA232G1287 Erigeron canadensis HOM05D004659 ORTHO05D005547 1.4e-61 240.4 222 63.1
ATR0594G228 Amborella trichopoda HOM05D004659 ORTHO05D005547 1.8e-61 240.0 198 65.7
Aa31sc127G30 Aethionema arabicum HOM05D004659 ORTHO05D005547 4.0e-61 238.8 183 63.4
CDE02G4355 Ceratophyllum demersum HOM05D002697 ORTHO05D005547 4.0e-61 238.8 194 68.6
Lj4g0017760 Lotus japonicus HOM05D004659 ORTHO05D005547 4.0e-61 238.8 187 70.6
unitig_46.g18586 Utricularia gibba HOM05D004659 ORTHO05D005547 5.2e-61 238.4 181 66.3
MSTRG.9197 Avicennia marina HOM05D004659 ORTHO05D005547 1.2e-60 237.3 225 58.2
Medtr4g131540 Medicago truncatula HOM05D004659 ORTHO05D005547 1.2e-60 237.3 213 56.8
Sc09g0006840 Simmondsia chinensis HOM05D004659 ORTHO05D005547 2.0e-60 236.5 182 67.0
Lj1P926T21 Lonicera japonica HOM05D004659 ORTHO05D005547 2.6e-60 236.1 223 54.7
SalBow4G3080 Salvia bowleyana HOM05D004659 ORTHO05D005547 2.6e-60 236.1 225 55.1
Psat4g007600 Pisum sativum HOM05D004659 ORTHO05D005547 3.4e-60 235.7 186 62.4
DCAR_019149 Daucus carota HOM05D004659 ORTHO05D005547 7.5e-60 234.6 224 59.8
CDE09G1094 Ceratophyllum demersum HOM05D004659 ORTHO05D005547 9.8e-60 234.2 228 61.0
Pp3c2_35950 Physcomitrium patens HOM05D004659 ORTHO05D005547 1.3e-59 233.8 193 68.9
SMO239G0117 Selaginella moellendorffii HOM05D004659 ORTHO05D005547 2.9e-59 232.6 177 72.3
Actinidia03015 Actinidia chinensis HOM05D004659 ORTHO05D005547 3.7e-59 232.3 160 70.0
Ah.10g033100 Amaranthus hybridus HOM05D004659 ORTHO05D005547 6.4e-59 231.5 188 63.3
Mapoly0115s0051 Marchantia polymorpha HOM05D004659 ORTHO05D005547 6.4e-59 231.5 203 65.5
AUR62036014 Chenopodium quinoa HOM05D004659 ORTHO05D005547 3.2e-58 229.2 224 53.6
AUR62027894 Chenopodium quinoa HOM05D004659 ORTHO05D005547 7.0e-58 228.0 223 53.4
AagrBONN_evm.TU.Sc2ySwM_228.2422 Anthoceros agrestis HOM05D004659 ORTHO05D005547 2.7e-57 226.1 209 61.7
Pp3c1_1330 Physcomitrium patens HOM05D004659 ORTHO05D005547 4.6e-57 225.3 202 64.4
SGA_v2.0_scaffold62G21448 Striga asiatica HOM05D004659 ORTHO05D005547 1.9e-55 219.9 225 51.1
Lalb_Chr13g0301081 Lupinus albus HOM05D004659 ORTHO05D005547 8.1e-54 214.5 219 58.4
SMO001G0016 Selaginella moellendorffii HOM05D004659 ORTHO05D005547 4.1e-50 202.2 140 67.9
Dinv31375 Davidia involucrata HOM05D004659 ORTHO05D005547 1.6e-46 190.3 128 70.3
TPR.G37110 Trifolium pratense HOM05D004659 ORTHO05D005547 2.1e-41 173.3 136 61.8
C01p52890 Brassica napus HOM05D004659 ORTHO05D005547 1.3e-40 170.6 138 59.4
Zm00001eb355270 Zea mays HOM05D004659 ORTHO05D005547 1.3e-40 170.6 168 52.4
BolC1t05226H Brassica oleracea HOM05D004659 ORTHO05D005547 3.9e-40 169.1 138 58.7
AT3G12370 Arabidopsis thaliana HOM05D004659 ORTHO05D005547 8.6e-40 167.9 138 59.4
BcaC09g48234 Brassica carinata HOM05D004659 ORTHO05D005547 1.1e-39 167.5 160 53.8
Sp3g10560 Schrenkiella parvula HOM05D004659 ORTHO05D005547 1.5e-39 167.2 138 58.7
AL3G24020 Arabidopsis lyrata HOM05D004659 ORTHO05D005547 1.9e-39 166.8 138 58.7
Thhalv10022434m.g Eutrema salsugineum HOM05D004659 ORTHO05D005547 1.9e-39 166.8 138 58.7
BcaC05g29267 Brassica carinata HOM05D004659 ORTHO05D005547 3.3e-39 166.0 138 58.0
C05p55460 Brassica napus HOM05D004659 ORTHO05D005547 3.3e-39 166.0 138 58.0
BolC5t34212H Brassica oleracea HOM05D004659 ORTHO05D005547 3.3e-39 166.0 138 58.0
A05p37030 Brassica napus HOM05D004659 ORTHO05D005547 9.6e-39 164.5 138 57.2
BraA05t22500Z Brassica rapa HOM05D004659 ORTHO05D005547 9.6e-39 164.5 138 57.2
Carub.0003s1173 Capsella rubella HOM05D004659 ORTHO05D005547 9.6e-39 164.5 141 57.4
Aa31sc153G80 Aethionema arabicum HOM05D004659 ORTHO05D005547 1.6e-38 163.7 141 54.6
CARHR086910 Cardamine hirsuta HOM05D004659 ORTHO05D005547 6.2e-38 161.8 138 57.2
Os05g0121500 Oryza sativa ssp. japonica HOM05D004659 ORTHO05D005547 1.1e-37 161.0 157 52.2
CBR_g32465 Chara braunii HOM05D004659 ORTHO05D005547 5.2e-37 158.7 193 50.3
SMO306G0014 Selaginella moellendorffii HOM05D004659 ORTHO05D005547 5.2e-37 158.7 103 72.8
HPP92_012064 Vanilla planifolia HOM05D004659 ORTHO05D005547 2.2e-35 153.3 158 49.4
A02p02000 Brassica napus HOM05D004659 ORTHO05D005547 1.3e-30 137.5 109 70.6
Glyma.13G155300 Glycine max HOM05D004659 ORTHO05D005547 1.2e-28 131.0 108 69.4
Haze_16952 Corylus avellana HOM05D004659 ORTHO05D005547 9.9e-28 127.9 227 37.9
Sc01g0005590 Simmondsia chinensis HOM05D004659 ORTHO05D005547 7.1e-26 121.7 152 44.7
Hund23274 Selenicereus undatus HOM05D004659 ORTHO05D005547 1.2e-25 120.9 152 42.1
Sc26g0002120 Simmondsia chinensis HOM05D004659 ORTHO05D005547 1.1e-23 114.4 151 40.4
BcaB01g05353 Brassica carinata HOM05D004659 ORTHO05D005547 3.3e-23 112.8 133 55.6
PRCOL_00005567 Prasinoderma coloniale HOM05D004659 ORTHO05D005547 3.3e-23 112.8 155 37.4
Rhsim07G0202500 Rhododendron simsii HOM05D004659 ORTHO05D005547 2.6e-20 103.2 125 48.8
Cfa001576 Carpinus fangiana HOM05D004659 ORTHO05D005547 3.4e-20 102.8 183 42.6
Sc01g0009170 Simmondsia chinensis HOM05D004659 ORTHO05D005547 1.3e-19 100.9 127 46.5
EL10Ac6g15306 Beta vulgaris HOM05D004659 ORTHO05D005547 7.1e-18 95.1 152 34.9
Ah.09g233850 Amaranthus hybridus HOM05D004659 ORTHO05D005547 9.3e-18 94.7 147 34.7
Pp3c11_2850 Physcomitrium patens HOM05D004659 ORTHO05D005547 1.0e-16 91.3 66 68.2
Zm00001eb342870 Zea mays HOM05D004659 ORTHO05D005547 1.8e-16 90.5 72 55.6
MD17G1117700 Malus domestica HOM05D004659 ORTHO05D005547 2.3e-16 90.1 90 51.1
Cre06.g272850 Chlamydomonas reinhardtii HOM05D004659 ORTHO05D005547 5.1e-16 89.0 198 31.3
GSVIVG01032650001 Vitis vinifera HOM05D004659 ORTHO05D005547 1.8e-13 80.5 182 39.0
AUR62043493 Chenopodium quinoa HOM05D004659 ORTHO05D005547 6.9e-13 78.6 101 43.6
MBI05_g35481_MAGBIO Magnolia biondii HOM05D004659 ORTHO05D005547 2.5e-10 70.1 65 56.9
Actinidia38237 Actinidia chinensis HOM05D004659 ORTHO05D005547 9.3e-10 68.2 84 47.6
Medtr3g058560 Medicago truncatula HOM05D004659 ORTHO05D005547 3.3e-07 59.7 78 44.9


User provided reference genes

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