Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb012710 Zea mays HOM05D005121 ORTHO05D006115 2.9e-171 605.1 306 100.0
Zm00001eb397440 Zea mays HOM05D005121 ORTHO05D006115 1.3e-158 563.1 307 93.8
Zm00001eb397450 Zea mays HOM05D005121 ORTHO05D006115 5.3e-157 557.8 306 92.2
Zm00001eb397460 Zea mays HOM05D005121 ORTHO05D006115 5.3e-157 557.8 306 92.2
Os03g0279900 Oryza sativa ssp. japonica HOM05D005121 ORTHO05D006115 9.1e-157 557.0 306 88.2
Zm00001eb397470 Zea mays HOM05D005121 ORTHO05D006115 9.1e-157 557.0 306 91.5
Zm00001eb397480 Zea mays HOM05D005121 ORTHO05D006115 1.1e-154 550.1 306 90.8
Ciclev10016069m.g Citrus clementina HOM05D005121 ORTHO05D006115 8.5e-139 497.3 303 80.9
arahy.Tifrunner.gnm1.ann1.XU4W4S Arachis hypogaea HOM05D005121 ORTHO05D006115 2.7e-137 492.3 303 80.2
arahy.Tifrunner.gnm1.ann1.ANU5MI Arachis hypogaea HOM05D005121 ORTHO05D006115 8.0e-137 490.7 303 79.9
arahy.Tifrunner.gnm1.ann1.FY8LHX Arachis hypogaea HOM05D005121 ORTHO05D006115 8.0e-137 490.7 303 79.9
Ca_00225_v3 Cicer arietinum L. HOM05D005121 ORTHO05D006115 8.0e-137 490.7 303 79.2
GSVIVG01003678001 Vitis vinifera HOM05D005121 ORTHO05D006115 8.0e-137 490.7 303 76.9
Actinidia24048 Actinidia chinensis HOM05D005121 ORTHO05D006115 1.0e-136 490.3 303 76.2
Potri.011G040000 Populus trichocarpa HOM05D005121 ORTHO05D006115 1.8e-136 489.6 303 77.2
VMungo0540G0293 Vigna mungo HOM05D005121 ORTHO05D006115 1.8e-136 489.6 303 79.2
CiPaw.10G115700 Carya illinoinensis HOM05D005121 ORTHO05D006115 2.3e-136 489.2 303 77.6
Phvul.006G193700 Phaseolus vulgaris HOM05D005121 ORTHO05D006115 5.2e-136 488.0 303 79.2
Thecc.06G202500 Theobroma cacao HOM05D005121 ORTHO05D006115 5.2e-136 488.0 303 76.2
Glyma.15G066000 Glycine max HOM05D005121 ORTHO05D006115 8.8e-136 487.3 303 79.9
Sabra11G0027500 Salix brachista HOM05D005121 ORTHO05D006115 8.8e-136 487.3 303 76.9
Glyma.13G247800 Glycine max HOM05D005121 ORTHO05D006115 1.2e-135 486.9 303 79.5
TWI38G0490 Tripterygium wilfordii HOM05D005121 ORTHO05D006115 1.5e-135 486.5 303 77.9
CSS0043949 Camellia sinensis var. sinensis HOM05D005121 ORTHO05D006115 2.0e-135 486.1 303 77.6
Eucgr.D00772 Eucalyptus grandis HOM05D005121 ORTHO05D006115 2.0e-135 486.1 303 78.2
Manes.17G032800 Manihot esculenta HOM05D005121 ORTHO05D006115 2.0e-135 486.1 301 80.4
Potri.004G026800 Populus trichocarpa HOM05D005121 ORTHO05D006115 2.0e-135 486.1 304 76.6
Rhsim02G0118100 Rhododendron simsii HOM05D005121 ORTHO05D006115 2.0e-135 486.1 303 77.6
Cfa000313 Carpinus fangiana HOM05D005121 ORTHO05D006115 2.6e-135 485.7 300 79.3
Lj6g0004146 Lotus japonicus HOM05D005121 ORTHO05D006115 2.6e-135 485.7 303 75.6
Medtr2g011480 Medicago truncatula HOM05D005121 ORTHO05D006115 2.6e-135 485.7 303 78.5
Psat1g209560 Pisum sativum HOM05D005121 ORTHO05D006115 2.6e-135 485.7 303 78.5
CSS0003935 Camellia sinensis var. sinensis HOM05D005121 ORTHO05D006115 4.4e-135 485.0 303 77.2
QL05p080508 Quercus lobata HOM05D005121 ORTHO05D006115 4.4e-135 485.0 303 78.9
EL10Ac6g14131 Beta vulgaris HOM05D005121 ORTHO05D006115 7.5e-135 484.2 303 76.9
Dinv18977 Davidia involucrata HOM05D005121 ORTHO05D006115 9.8e-135 483.8 303 78.9
TPR.G19604 Trifolium pratense HOM05D005121 ORTHO05D006115 1.3e-134 483.4 303 75.6
Nn1g06832 Nelumbo nucifera HOM05D005121 ORTHO05D006115 1.7e-134 483.0 303 79.5
Gohir.D10G019900 Gossypium hirsutum HOM05D005121 ORTHO05D006115 2.2e-134 482.6 303 76.6
CANSAT56G0975 Cannabis sativa HOM05D005121 ORTHO05D006115 1.1e-133 480.3 303 76.9
AUR62014685 Chenopodium quinoa HOM05D005121 ORTHO05D006115 1.1e-133 480.3 303 75.6
AUR62012514 Chenopodium quinoa HOM05D005121 ORTHO05D006115 1.4e-133 479.9 303 75.2
MELO3C022396.2 Cucumis melo HOM05D005121 ORTHO05D006115 1.4e-133 479.9 303 75.9
Gorai.011G021100 Gossypium raimondii HOM05D005121 ORTHO05D006115 1.4e-133 479.9 303 79.2
PGR031G1397 Punica granatum HOM05D005121 ORTHO05D006115 1.8e-133 479.6 303 77.9
Sed0024430 Sechium edule HOM05D005121 ORTHO05D006115 1.8e-133 479.6 303 75.9
TWI63G0506 Tripterygium wilfordii HOM05D005121 ORTHO05D006115 1.8e-133 479.6 303 75.9
CsaV3_6G007300 Cucumis sativus L. HOM05D005121 ORTHO05D006115 4.1e-133 478.4 303 75.6
Duzib235G0052 Durio zibethinus HOM05D005121 ORTHO05D006115 4.1e-133 478.4 303 77.9
Hund21294 Selenicereus undatus HOM05D005121 ORTHO05D006115 4.1e-133 478.4 303 78.5
THA.LOC104809541 Tarenaya hassleriana HOM05D005121 ORTHO05D006115 4.1e-133 478.4 302 78.8
Gohir.A10G019000 Gossypium hirsutum HOM05D005121 ORTHO05D006115 5.4e-133 478.0 303 78.9
MD10G1305900 Malus domestica HOM05D005121 ORTHO05D006115 5.4e-133 478.0 303 74.6
Aqoxy7G03433 Aquilegia oxysepala HOM05D005121 ORTHO05D006115 9.1e-133 477.2 303 77.2
ClCG06G001360 Citrullus lanatus HOM05D005121 ORTHO05D006115 9.1e-133 477.2 303 75.2
Cc06_g18220 Coffea canephora HOM05D005121 ORTHO05D006115 9.1e-133 477.2 303 73.6
CAN.G424.38 Capsicum annuum HOM05D005121 ORTHO05D006115 1.2e-132 476.9 303 73.6
Duzib160G0488 Durio zibethinus HOM05D005121 ORTHO05D006115 1.2e-132 476.9 303 76.6
Nitab4.5_0000649g0190 Nicotiana tabacum HOM05D005121 ORTHO05D006115 1.2e-132 476.9 303 73.9
Oeu027963.1 Olea europaea HOM05D005121 ORTHO05D006115 1.2e-132 476.9 303 76.2
TAR627G0857 Trochodendron aralioides HOM05D005121 ORTHO05D006115 1.2e-132 476.9 303 76.9
MD05G1329000 Malus domestica HOM05D005121 ORTHO05D006115 1.6e-132 476.5 303 75.2
Peaxi162Scf01152g00110 Petunia axillaris HOM05D005121 ORTHO05D006115 2.7e-132 475.7 303 74.6
Nitab4.5_0005620g0020 Nicotiana tabacum HOM05D005121 ORTHO05D006115 3.5e-132 475.3 303 75.6
COL.COLO4_31636 Corchorus olitorius HOM05D005121 ORTHO05D006115 4.5e-132 474.9 303 77.2
Lalb_Chr18g0060031 Lupinus albus HOM05D005121 ORTHO05D006115 5.9e-132 474.6 303 76.6
PSO210G2069 Papaver somniferum HOM05D005121 ORTHO05D006115 7.7e-132 474.2 303 75.2
ClCG09G021600 Citrullus lanatus HOM05D005121 ORTHO05D006115 1.0e-131 473.8 303 74.9
MELO3C013201.2 Cucumis melo HOM05D005121 ORTHO05D006115 1.0e-131 473.8 303 74.9
ATR1132G047 Amborella trichopoda HOM05D005121 ORTHO05D006115 1.3e-131 473.4 301 78.4
Lj1A1216T23 Lonicera japonica HOM05D005121 ORTHO05D006115 1.3e-131 473.4 305 73.4
CsaV3_7G021490 Cucumis sativus L. HOM05D005121 ORTHO05D006115 1.7e-131 473.0 303 74.6
PGSC0003DMG400022347 Solanum tuberosum HOM05D005121 ORTHO05D006115 1.7e-131 473.0 303 75.2
Sopen02g024200 Solanum pennellii HOM05D005121 ORTHO05D006115 3.8e-131 471.9 303 74.9
MSTRG.7276 Avicennia marina HOM05D005121 ORTHO05D006115 5.0e-131 471.5 303 76.2
RcHm_v2.0_Chr5g0005701 Rosa chinensis HOM05D005121 ORTHO05D006115 6.6e-131 471.1 303 74.6
Solyc02g079400.3 Solanum lycopersicum HOM05D005121 ORTHO05D006115 6.6e-131 471.1 303 74.9
ECA234G4718 Erigeron canadensis HOM05D005121 ORTHO05D006115 1.9e-130 469.5 303 72.9
Prupe.4G033800 Prunus persica HOM05D005121 ORTHO05D006115 3.3e-130 468.8 303 75.6
DCAR_004161 Daucus carota HOM05D005121 ORTHO05D006115 4.2e-130 468.4 303 72.6
CDE05G3522 Ceratophyllum demersum HOM05D005121 ORTHO05D006115 2.1e-129 466.1 303 75.9
FAN21G3866 Fragaria x ananassa HOM05D005121 ORTHO05D006115 2.1e-129 466.1 303 73.6
Sc24g0000680 Simmondsia chinensis HOM05D005121 ORTHO05D006115 2.1e-129 466.1 305 75.4
FvH4_3g03660 Fragaria vesca HOM05D005121 ORTHO05D006115 2.8e-129 465.7 303 73.3
FAN25G2418 Fragaria x ananassa HOM05D005121 ORTHO05D006115 2.8e-129 465.7 303 73.3
HanXRQChr12g0359441 Helianthus annuus HOM05D005121 ORTHO05D006115 3.6e-129 465.3 303 72.6
Manes.16G019177 Manihot esculenta HOM05D005121 ORTHO05D006115 3.6e-129 465.3 301 76.7
Lsat_1_v5_gn_5_78441 Lactuca sativa HOM05D005121 ORTHO05D006115 8.0e-129 464.2 303 72.9
CDE02G1411 Ceratophyllum demersum HOM05D005121 ORTHO05D006115 1.4e-128 463.4 303 74.6
DCAR_008096 Daucus carota HOM05D005121 ORTHO05D006115 2.3e-128 462.6 303 73.9
FAN16G2329 Fragaria x ananassa HOM05D005121 ORTHO05D006115 3.4e-127 458.8 300 73.0
CARHR050750 Cardamine hirsuta HOM05D005121 ORTHO05D006115 7.5e-127 457.6 307 71.3
Oeu030047.2 Olea europaea HOM05D005121 ORTHO05D006115 9.8e-127 457.2 324 70.4
unitig_26.g9381 Utricularia gibba HOM05D005121 ORTHO05D006115 9.8e-127 457.2 303 71.6
Aa31LG2G9240 Aethionema arabicum HOM05D005121 ORTHO05D006115 2.2e-126 456.1 305 71.8
Sp2g02960 Schrenkiella parvula HOM05D005121 ORTHO05D006115 2.2e-126 456.1 305 71.5
CARHR011610 Cardamine hirsuta HOM05D005121 ORTHO05D006115 8.3e-126 454.1 304 73.7
Migut.M01229 Erythranthe guttata HOM05D005121 ORTHO05D006115 1.1e-125 453.8 303 74.6
Sabra04G0015300 Salix brachista HOM05D005121 ORTHO05D006115 1.1e-125 453.8 371 62.8
FAN11G1262 Fragaria x ananassa HOM05D005121 ORTHO05D006115 4.1e-125 451.8 328 67.7
SGA_v2.0_scaffold114G31993 Striga asiatica HOM05D005121 ORTHO05D006115 9.2e-125 450.7 306 71.2
A01p30380 Brassica napus HOM05D005121 ORTHO05D006115 1.2e-124 450.3 306 70.3
C01p38590 Brassica napus HOM05D005121 ORTHO05D006115 1.2e-124 450.3 306 70.3
BraA01t03171Z Brassica rapa HOM05D005121 ORTHO05D006115 1.2e-124 450.3 306 70.3
AL2G14620 Arabidopsis lyrata HOM05D005121 ORTHO05D006115 1.6e-124 449.9 307 69.7
Thhalv10023604m.g Eutrema salsugineum HOM05D005121 ORTHO05D006115 2.7e-124 449.1 307 69.7
Carub.0002s0357 Capsella rubella HOM05D005121 ORTHO05D006115 4.5e-124 448.4 307 70.7
AT1G61620 Arabidopsis thaliana HOM05D005121 ORTHO05D006115 7.8e-124 447.6 307 70.7
BcaC06g31855 Brassica carinata HOM05D005121 ORTHO05D006115 7.8e-124 447.6 306 69.9
Haze_06613 Corylus avellana HOM05D005121 ORTHO05D006115 2.9e-123 445.7 388 60.8
Pp3c9_6940 Physcomitrium patens HOM05D005121 ORTHO05D006115 2.5e-114 416.0 304 65.1
Mapoly0029s0083 Marchantia polymorpha HOM05D005121 ORTHO05D006115 3.6e-113 412.1 306 65.4
SMO147G0402 Selaginella moellendorffii HOM05D005121 ORTHO05D006115 8.9e-112 407.5 303 64.7
Pp3c15_12040 Physcomitrium patens HOM05D005121 ORTHO05D006115 2.6e-111 406.0 304 63.2
Migut.H01530 Erythranthe guttata HOM05D005121 ORTHO05D006115 3.7e-110 402.1 300 65.0
Atru.chr10.2037 Acer truncatum HOM05D005121 ORTHO05D006115 9.9e-103 377.5 235 79.6
AagrBONN_evm.TU.Sc2ySwM_344.3296 Anthoceros agrestis HOM05D005121 ORTHO05D006115 1.7e-102 376.7 303 61.4
unitig_749.g13632 Utricularia gibba HOM05D005121 ORTHO05D006115 1.9e-101 373.2 303 63.0
Actinidia11821 Actinidia chinensis HOM05D005121 ORTHO05D006115 5.1e-99 365.2 259 71.0
CBR_g4035 Chara braunii HOM05D005121 ORTHO05D006115 4.4e-95 352.1 317 56.8
vmacro15854 Vaccinium macrocarpon HOM05D005121 ORTHO05D006115 2.4e-85 319.7 223 72.2
Ah.09g236300 Amaranthus hybridus HOM05D005121 ORTHO05D006115 5.4e-85 318.5 226 74.3
Peaxi162Scf00047g00710 Petunia axillaris HOM05D001486 ORTHO05D004921 5.4e-85 318.5 226 66.8
HPP92_010075 Vanilla planifolia HOM05D005121 ORTHO05D006115 9.9e-79 297.7 205 67.8
Zm00001eb396290 Zea mays HOM05D005121 ORTHO05D006115 6.2e-73 278.5 155 89.0
HanXRQChr10g0310231 Helianthus annuus HOM05D005121 ORTHO05D006115 5.7e-66 255.4 160 76.2
BcaB04g20348 Brassica carinata HOM05D005121 ORTHO05D006115 5.8e-63 245.4 149 77.2
Cpa.g.sc27.158 Carica papaya HOM05D005121 ORTHO05D006115 1.0e-62 244.6 143 81.1
Peaxi162Scf01035g00217 Petunia axillaris HOM05D005121 ORTHO05D006115 1.8e-56 223.8 181 61.9
BcaB04g20349 Brassica carinata HOM05D005121 ORTHO05D006115 3.9e-51 206.1 154 63.6
Sed0008986 Sechium edule HOM05D005121 ORTHO05D006115 5.0e-46 189.1 300 42.7
Ah.09g236480 Amaranthus hybridus HOM05D005121 ORTHO05D006115 1.3e-38 164.5 79 91.1
Cre02.g142086 Chlamydomonas reinhardtii HOM05D005121 ORTHO05D006115 1.3e-38 164.5 305 36.4
MCO09G390 Micromonas commoda HOM05D005121 ORTHO05D006115 2.2e-38 163.7 299 34.4
ATR1132G008 Amborella trichopoda HOM05D005121 ORTHO05D006115 2.9e-38 163.3 89 83.1
Peaxi162Scf00047g00079 Petunia axillaris HOM05D005121 ORTHO05D006115 1.1e-37 161.4 83 86.7
vmacro15853 Vaccinium macrocarpon HOM05D005121 ORTHO05D006115 1.1e-37 161.4 80 90.0
BolC1t03821H Brassica oleracea HOM05D005121 ORTHO05D006115 2.7e-36 156.8 80 86.2
SHI00053 Sapria himalayana HOM05D005121 ORTHO05D006115 2.6e-34 150.2 130 56.2
CARHR260990 Cardamine hirsuta HOM05D005121 ORTHO05D006115 2.6e-31 140.2 125 54.4
Ah.14g088780 Amaranthus hybridus HOM05D005121 ORTHO05D006115 9.4e-29 131.7 203 41.4
TAR628G0944 Trochodendron aralioides HOM05D004330 ORTHO05D005182 4.7e-28 129.4 79 75.9
Hma1.2p1_0155F.1_g068340 Hydrangea macrophylla HOM05D005121 ORTHO05D006115 4.8e-25 119.4 82 67.1
Lj6g0012970 Lotus japonicus HOM05D003951 ORTHO05D006115 7.7e-23 112.1 58 86.2
PRCOL_00001084 Prasinoderma coloniale HOM05D005121 ORTHO05D006115 1.7e-22 110.9 293 32.8
SGA_v2.0_scaffold7G03907 Striga asiatica HOM05D005121 ORTHO05D006115 3.0e-19 100.1 60 75.0
Atru.chr10.2036 Acer truncatum HOM05D005121 ORTHO05D006115 6.3e-17 92.4 55 78.2
TAR626G1242 Trochodendron aralioides HOM05D005121 ORTHO05D006115 2.0e-15 87.4 74 73.0
Cfa022197 Carpinus fangiana HOM05D005121 ORTHO05D006115 4.5e-15 86.3 242 29.3


User provided reference genes

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