Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb012380 Zea mays HOM05D007849 ORTHO05D009964 6.3e-196 687.2 332 100.0
Os03g0275400 Oryza sativa ssp. japonica HOM05D007849 ORTHO05D009964 1.3e-100 370.5 217 82.0
Zm00001eb397660 Zea mays HOM05D007849 ORTHO05D009964 1.2e-93 347.4 181 90.6
Cfa011488 Carpinus fangiana HOM05D007849 ORTHO05D009964 2.3e-68 263.5 262 48.9
Dinv16985 Davidia involucrata HOM05D007849 ORTHO05D009964 8.6e-68 261.5 275 47.6
Nn2g10385 Nelumbo nucifera HOM05D007849 ORTHO05D009964 2.5e-67 260.0 279 48.7
Aqoxy6G02063 Aquilegia oxysepala HOM05D007849 ORTHO05D009964 2.8e-66 256.5 273 49.8
Oeu019202.2 Olea europaea HOM05D007849 ORTHO05D009964 6.1e-66 255.4 282 45.7
Thecc.09G323300 Theobroma cacao HOM05D007849 ORTHO05D009964 5.2e-65 252.3 258 47.3
PSO339G6571 Papaver somniferum HOM05D007849 ORTHO05D009964 1.2e-64 251.1 288 46.9
ATR0559G278 Amborella trichopoda HOM05D007849 ORTHO05D009964 1.5e-64 250.8 258 48.8
vmacro03084 Vaccinium macrocarpon HOM05D007849 ORTHO05D009964 2.0e-64 250.4 328 43.0
Manes.04G034000 Manihot esculenta HOM05D007849 ORTHO05D009964 3.4e-64 249.6 256 48.4
GSVIVG01024984001 Vitis vinifera HOM05D007849 ORTHO05D009964 4.9e-63 245.7 256 50.0
Actinidia37211 Actinidia chinensis HOM05D007849 ORTHO05D009964 1.1e-62 244.6 288 44.4
Atru.chr2.2286 Acer truncatum HOM05D007849 ORTHO05D009964 1.4e-62 244.2 252 49.6
Atru.chr3.3864 Acer truncatum HOM05D007849 ORTHO05D009964 1.4e-62 244.2 252 49.6
Potri.009G029800 Populus trichocarpa HOM05D007849 ORTHO05D009964 2.4e-62 243.4 265 49.1
Eucgr.B02377 Eucalyptus grandis HOM05D007849 ORTHO05D009964 5.4e-62 242.3 257 48.6
QL01p032362 Quercus lobata HOM05D007849 ORTHO05D009964 5.4e-62 242.3 272 47.4
Sabra09G0020700 Salix brachista HOM05D007849 ORTHO05D009964 5.4e-62 242.3 259 49.8
Dinv01583 Davidia involucrata HOM05D007849 ORTHO05D009964 9.2e-62 241.5 272 46.0
Dinv43166 Davidia involucrata HOM05D007849 ORTHO05D009964 4.5e-61 239.2 272 45.6
PGR102G2625 Punica granatum HOM05D007849 ORTHO05D009964 4.5e-61 239.2 291 43.0
TWI79G0095 Tripterygium wilfordii HOM05D007849 ORTHO05D009964 4.5e-61 239.2 257 48.2
HPP92_021135 Vanilla planifolia HOM05D007849 ORTHO05D009964 5.9e-61 238.8 258 46.5
Sed0012750 Sechium edule HOM05D007849 ORTHO05D009964 7.8e-61 238.4 280 43.2
Haze_24080 Corylus avellana HOM05D007849 ORTHO05D009964 1.3e-60 237.7 303 42.6
Gohir.D03G126500 Gossypium hirsutum HOM05D007849 ORTHO05D009964 1.7e-60 237.3 257 44.0
CsaV3_6G016950 Cucumis sativus L. HOM05D007849 ORTHO05D009964 2.3e-60 236.9 262 44.3
Hma1.2p1_1888F.1_g306580 Hydrangea macrophylla HOM05D007849 ORTHO05D009964 2.3e-60 236.9 231 50.2
SalBow2G0065 Salvia bowleyana HOM05D007849 ORTHO05D009964 3.8e-60 236.1 281 41.6
AUR62009591 Chenopodium quinoa HOM05D007849 ORTHO05D009964 6.6e-60 235.3 270 45.2
ECA236G2501 Erigeron canadensis HOM05D007849 ORTHO05D009964 3.3e-59 233.0 260 46.5
Migut.N02673 Erythranthe guttata HOM05D007849 ORTHO05D009964 2.1e-58 230.3 261 43.3
DCAR_018903 Daucus carota HOM05D007849 ORTHO05D009964 2.8e-58 229.9 279 44.4
Dinv42934 Davidia involucrata HOM05D007849 ORTHO05D009964 3.6e-58 229.6 253 45.8
MD03G1096200 Malus domestica HOM05D007849 ORTHO05D009964 1.8e-57 227.3 252 44.0
Gorai.003G133000 Gossypium raimondii HOM05D007849 ORTHO05D009964 4.0e-57 226.1 272 41.5
FAN11G2231 Fragaria x ananassa HOM05D007849 ORTHO05D009964 5.2e-57 225.7 264 45.1
MBI14_g31252_MAGBIO Magnolia biondii HOM05D007849 ORTHO05D009964 1.2e-56 224.6 273 44.3
Gohir.A03G041600 Gossypium hirsutum HOM05D007849 ORTHO05D009964 1.5e-56 224.2 257 42.4
RcHm_v2.0_Chr5g0064071 Rosa chinensis HOM05D007849 ORTHO05D009964 2.6e-56 223.4 256 45.7
ClCG02G020250 Citrullus lanatus HOM05D007849 ORTHO05D009964 1.3e-55 221.1 302 40.4
Lsat_1_v5_gn_4_92200 Lactuca sativa HOM05D007849 ORTHO05D009964 9.2e-54 214.9 255 45.5
Duzib168G1667 Durio zibethinus HOM05D007849 ORTHO05D009964 6.0e-53 212.2 226 45.1
unitig_0.g229 Utricularia gibba HOM05D007849 ORTHO05D009964 1.1e-51 208.0 240 45.0
Ciclev10029013m.g Citrus clementina HOM05D007849 ORTHO05D009964 2.5e-51 206.8 218 45.4
SEGI_09096 Sequoiadendron giganteum HOM05D007849 ORTHO05D009964 5.6e-51 205.7 292 37.7
TAR636G2131 Trochodendron aralioides HOM05D007849 ORTHO05D009964 1.6e-50 204.1 211 48.8
COL.COLO4_18494 Corchorus olitorius HOM05D007849 ORTHO05D009964 2.1e-50 203.8 217 47.0
AUR62001805 Chenopodium quinoa HOM05D007849 ORTHO05D009964 2.0e-48 197.2 246 43.9
Hund18918 Selenicereus undatus HOM05D007849 ORTHO05D009964 2.6e-48 196.8 233 45.5
Cpa.g.sc81.165 Carica papaya HOM05D007849 ORTHO05D009964 7.5e-48 195.3 258 41.1
Rhsim13G0083900 Rhododendron simsii HOM05D007849 ORTHO05D009964 9.2e-46 188.3 249 43.0
MSTRG.12647 Avicennia marina HOM05D007849 ORTHO05D009964 4.3e-43 179.5 139 56.1
FAN21G0522 Fragaria x ananassa HOM05D007849 ORTHO05D009964 2.1e-42 177.2 163 52.1
HanXRQChr05g0134521 Helianthus annuus HOM05D007849 ORTHO05D009964 3.6e-42 176.4 176 48.3
Lj2C1060G4 Lonicera japonica HOM05D007849 ORTHO05D009964 6.2e-42 175.6 188 45.7
FvH4_3g35813 Fragaria vesca HOM05D007849 ORTHO05D009964 3.1e-41 173.3 258 39.5
SGA_v2.0_scaffold104G30123 Striga asiatica HOM05D007849 ORTHO05D009964 4.6e-37 159.5 261 37.5
Prupe.6G079200 Prunus persica HOM05D007849 ORTHO05D009964 1.6e-34 151.0 204 41.2
EL10Ac7g16001 Beta vulgaris HOM05D007849 ORTHO05D009964 2.2e-31 140.6 175 43.4
Pp3c18_13380 Physcomitrium patens HOM05D007849 ORTHO05D009964 1.4e-25 121.3 177 35.6
Sc21g0005700 Simmondsia chinensis HOM05D007849 ORTHO05D009964 2.4e-25 120.6 124 49.2
Ah.08g219350 Amaranthus hybridus HOM05D007849 ORTHO05D009964 6.9e-25 119.0 206 34.5
Mapoly0108s0012 Marchantia polymorpha HOM05D007849 ORTHO05D009964 5.8e-24 115.9 306 26.8
CSS0003796 Camellia sinensis var. sinensis HOM05D007849 ORTHO05D009964 1.4e-22 111.3 120 47.5
CSS0031317 Camellia sinensis var. sinensis HOM05D007849 ORTHO05D009964 1.3e-20 104.8 124 46.0
CSS0045886 Camellia sinensis var. sinensis HOM05D007849 ORTHO05D009964 1.7e-20 104.4 126 45.2
CSS0045873 Camellia sinensis var. sinensis HOM05D007849 ORTHO05D009964 2.3e-20 104.0 126 45.2
CSS0013987 Camellia sinensis var. sinensis HOM05D007849 ORTHO05D009964 3.0e-20 103.6 124 45.2
CSS0023116 Camellia sinensis var. sinensis HOM05D007849 ORTHO05D009964 1.9e-19 100.9 126 44.4
MELO3C025926.2 Cucumis melo HOM05D007849 ORTHO05D009964 9.6e-19 98.6 120 38.3
CSS0041914 Camellia sinensis var. sinensis HOM05D007849 ORTHO05D009964 4.8e-18 96.3 130 42.3
Sed0025903 Sechium edule HOM05D007849 ORTHO05D009964 2.4e-17 94.0 112 39.3
CBR_g22259 Chara braunii HOM05D007849 ORTHO05D009964 2.4e-14 84.0 194 26.8
PSO384G3258 Papaver somniferum HOM05D007849 ORTHO05D009964 8.7e-12 75.5 269 28.6
CSS0042684 Camellia sinensis var. sinensis HOM05D007849 ORTHO05D009964 2.5e-11 73.9 113 35.4
CSS0041545 Camellia sinensis var. sinensis HOM05D007849 ORTHO05D009964 1.3e-10 71.6 54 53.7
CSS0012538 Camellia sinensis var. sinensis HOM05D000571 ORTHO05D000435 2.0e-08 64.3 188 27.7
TAR546G0004 Trochodendron aralioides HOM05D000571 ORTHO05D000435 2.2e-07 60.8 155 29.0
Nn7g37151 Nelumbo nucifera HOM05D000571 ORTHO05D000435 3.8e-07 60.1 154 27.3
BcaB02g07635 Brassica carinata HOM05D000571 ORTHO05D000435 1.1e-06 58.5 154 26.6
BraA07t29974Z Brassica rapa HOM05D000571 ORTHO05D000435 1.1e-06 58.5 154 26.6
Aa31LG3G1030 Aethionema arabicum HOM05D000571 ORTHO05D000435 1.9e-06 57.8 219 25.1
BcaB04g19660 Brassica carinata HOM05D005874 ORTHO05D007206 1.9e-06 57.8 289 24.6
MD00G1107600 Malus domestica HOM05D000571 ORTHO05D000435 1.9e-06 57.8 148 28.4
Manes.13G069900 Manihot esculenta HOM05D000571 ORTHO05D000435 1.9e-06 57.8 232 24.1
Aqoxy1G00106 Aquilegia oxysepala HOM05D000571 ORTHO05D000435 2.5e-06 57.4 152 27.0
A07p23140 Brassica napus HOM05D004558 ORTHO05D005647 2.5e-06 57.4 154 26.0
BolC6t37552H Brassica oleracea HOM05D000571 ORTHO05D000435 2.5e-06 57.4 154 26.0
Duzib106G0818 Durio zibethinus HOM05D000571 ORTHO05D000435 2.5e-06 57.4 223 22.9
BcaC07g40106 Brassica carinata HOM05D000571 ORTHO05D000435 3.2e-06 57.0 154 25.3
Cc05_g04570 Coffea canephora HOM05D000571 ORTHO05D000435 3.2e-06 57.0 156 29.5
Medtr7g088350 Medicago truncatula HOM05D000571 ORTHO05D000435 3.2e-06 57.0 150 27.3
Actinidia00884 Actinidia chinensis HOM05D000571 ORTHO05D000435 4.2e-06 56.6 149 29.5
MELO3C026803.2 Cucumis melo HOM05D000571 ORTHO05D000435 4.2e-06 56.6 155 27.7
Sed0018048 Sechium edule HOM05D000571 ORTHO05D000435 4.2e-06 56.6 155 29.7
SMO116G0044 Selaginella moellendorffii HOM05D000571 ORTHO05D000435 4.2e-06 56.6 153 28.1
Actinidia38206 Actinidia chinensis HOM05D000571 ORTHO05D000435 5.5e-06 56.2 149 29.5
ATR0794G048 Amborella trichopoda HOM05D000571 ORTHO05D000435 5.5e-06 56.2 215 25.6
BcaC08g44811 Brassica carinata HOM05D004558 ORTHO05D005647 5.5e-06 56.2 154 26.0
A09p05220 Brassica napus HOM05D005874 ORTHO05D007206 5.5e-06 56.2 353 22.9
C06p23840 Brassica napus HOM05D004558 ORTHO05D005647 5.5e-06 56.2 154 26.0
BraA09t36161Z Brassica rapa HOM05D005874 ORTHO05D007206 5.5e-06 56.2 353 22.9
arahy.Tifrunner.gnm1.ann1.HXF7IN Arachis hypogaea HOM05D005588 ORTHO05D006615 7.1e-06 55.8 156 26.9
CsaV3_4G031730 Cucumis sativus L. HOM05D000571 ORTHO05D000435 7.1e-06 55.8 155 27.7
HanXRQChr09g0246851 Helianthus annuus HOM05D000968 ORTHO05D003096 7.1e-06 55.8 266 27.8
SEGI_16844 Sequoiadendron giganteum HOM05D000571 ORTHO05D000435 7.1e-06 55.8 159 28.3
Cfa019924 Carpinus fangiana HOM05D000571 ORTHO05D000435 9.3e-06 55.5 150 26.0
CiPaw.07G012300 Carya illinoinensis HOM05D005874 ORTHO05D007206 9.3e-06 55.5 280 24.6
Pp3c11_17220 Physcomitrium patens HOM05D004334 ORTHO05D004763 9.3e-06 55.5 148 28.4
Rhsim04G0118900 Rhododendron simsii HOM05D000571 ORTHO05D000435 9.3e-06 55.5 148 28.4
SGA_v2.0_scaffold106G30563 Striga asiatica HOM05D000571 ORTHO05D000435 9.3e-06 55.5 150 27.3
THA.LOC104803236 Tarenaya hassleriana HOM05D000571 ORTHO05D000435 9.3e-06 55.5 154 25.3


User provided reference genes

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