Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb011340 Zea mays HOM05D002969 ORTHO05D003308 2.8e-51 204.9 98 100.0
Zm00001eb254710 Zea mays HOM05D002969 ORTHO05D003308 1.1e-50 203.0 98 99.0
Zm00001eb254800 Zea mays HOM05D002969 ORTHO05D003308 1.1e-50 203.0 98 99.0
Zm00001eb254750 Zea mays HOM05D002969 ORTHO05D003308 1.3e-48 196.1 98 96.9
Zm00001eb047190 Zea mays HOM05D002969 ORTHO05D003308 8.4e-48 193.4 98 94.9
Os02g0633100 Oryza sativa ssp. japonica HOM05D002969 ORTHO05D003308 1.3e-24 116.3 97 63.9
MBI06_g12843_MAGBIO Magnolia biondii HOM05D002969 ORTHO05D003308 3.6e-22 108.2 95 57.9
MBI06_g44919_MAGBIO Magnolia biondii HOM05D002969 ORTHO05D003308 3.6e-22 108.2 95 57.9
Haze_16025 Corylus avellana HOM05D002969 ORTHO05D003308 8.0e-22 107.1 95 55.8
Cfa003537 Carpinus fangiana HOM05D002969 ORTHO05D003308 4.0e-21 104.8 95 53.7
Duzib235G1299 Durio zibethinus HOM05D002969 ORTHO05D003308 5.2e-21 104.4 98 52.0
Prupe.3G042500 Prunus persica HOM05D002969 ORTHO05D003308 5.2e-21 104.4 83 57.8
Cc02_g14940 Coffea canephora HOM05D002969 ORTHO05D003308 6.7e-21 104.0 95 52.6
COL.COLO4_30764 Corchorus olitorius HOM05D002969 ORTHO05D003308 6.7e-21 104.0 98 51.0
Thecc.06G119100 Theobroma cacao HOM05D002969 ORTHO05D003308 1.1e-20 103.2 98 53.1
AT1G17450 Arabidopsis thaliana HOM05D002969 ORTHO05D003308 2.0e-20 102.4 98 51.0
CiPaw.01G219300 Carya illinoinensis HOM05D002969 ORTHO05D003308 3.3e-20 101.7 95 52.6
MD09G1184300 Malus domestica HOM05D002969 ORTHO05D003308 3.3e-20 101.7 87 54.0
Manes.11G021000 Manihot esculenta HOM05D002969 ORTHO05D003308 4.4e-20 101.3 96 52.1
QL05p007828 Quercus lobata HOM05D002969 ORTHO05D003308 4.4e-20 101.3 95 53.7
Carub.0001s1721 Capsella rubella HOM05D002969 ORTHO05D003308 7.4e-20 100.5 98 50.0
Sp3g22890 Schrenkiella parvula HOM05D002969 ORTHO05D003308 7.4e-20 100.5 98 51.0
TAR626G1632 Trochodendron aralioides HOM05D002969 ORTHO05D003308 7.4e-20 100.5 95 51.6
Carub.0002s0593 Capsella rubella HOM05D002969 ORTHO05D003308 2.2e-19 99.0 98 50.0
TWI31G0627 Tripterygium wilfordii HOM05D002969 ORTHO05D003308 2.2e-19 99.0 95 51.6
TWI31G0668 Tripterygium wilfordii HOM05D002969 ORTHO05D003308 2.2e-19 99.0 98 48.0
Prupe.8G262800 Prunus persica HOM05D002969 ORTHO05D003308 2.8e-19 98.6 98 49.0
Atru.chr1.3951 Acer truncatum HOM05D002969 ORTHO05D003308 3.7e-19 98.2 83 56.6
AL1G29730 Arabidopsis lyrata HOM05D002969 ORTHO05D003308 3.7e-19 98.2 98 50.0
Lj3g0017600 Lotus japonicus HOM05D002969 ORTHO05D003308 3.7e-19 98.2 97 48.5
CSS0043728 Camellia sinensis var. sinensis HOM05D002969 ORTHO05D003308 4.8e-19 97.8 95 48.4
FvH4_6g34630 Fragaria vesca HOM05D002969 ORTHO05D003308 4.8e-19 97.8 83 56.6
RcHm_v2.0_Chr6g0291551 Rosa chinensis HOM05D002969 ORTHO05D003308 4.8e-19 97.8 95 48.4
arahy.Tifrunner.gnm1.ann1.MA4BJF Arachis hypogaea HOM05D002969 ORTHO05D003308 6.3e-19 97.4 95 48.4
CARHR018040 Cardamine hirsuta HOM05D002969 ORTHO05D003308 6.3e-19 97.4 98 49.0
FAN14G5519 Fragaria x ananassa HOM05D002969 ORTHO05D003308 6.3e-19 97.4 83 56.6
RcHm_v2.0_Chr2g0145161 Rosa chinensis HOM05D002969 ORTHO05D003308 6.3e-19 97.4 83 55.4
arahy.Tifrunner.gnm1.ann1.8DY1VB Arachis hypogaea HOM05D002969 ORTHO05D003308 8.2e-19 97.1 95 48.4
Glyma.19G263900 Glycine max HOM05D002969 ORTHO05D003308 8.2e-19 97.1 98 46.9
Gohir.D04G009700 Gossypium hirsutum HOM05D002969 ORTHO05D003308 8.2e-19 97.1 98 49.0
Gorai.012G011500 Gossypium raimondii HOM05D002969 ORTHO05D003308 8.2e-19 97.1 98 49.0
TPR.G25535 Trifolium pratense HOM05D002969 ORTHO05D003308 8.2e-19 97.1 97 48.5
Actinidia32183 Actinidia chinensis HOM05D002969 ORTHO05D003308 1.1e-18 96.7 95 49.5
AL2G17610 Arabidopsis lyrata HOM05D002969 ORTHO05D003308 1.1e-18 96.7 97 50.5
BcaB06g26734 Brassica carinata HOM05D002969 ORTHO05D003308 1.1e-18 96.7 98 48.0
COL.COLO4_27975 Corchorus olitorius HOM05D002969 ORTHO05D003308 1.1e-18 96.7 85 55.3
FAN09G2022 Fragaria x ananassa HOM05D002969 ORTHO05D003308 1.1e-18 96.7 83 55.4
Potri.003G064000 Populus trichocarpa HOM05D002969 ORTHO05D003308 1.1e-18 96.7 96 49.0
Sabra03G0037600 Salix brachista HOM05D002969 ORTHO05D003308 1.1e-18 96.7 96 49.0
THA.LOC104813957 Tarenaya hassleriana HOM05D002969 ORTHO05D003308 1.4e-18 96.3 95 53.7
Nitab4.5_0000794g0160 Nicotiana tabacum HOM05D002969 ORTHO05D003308 1.8e-18 95.9 95 47.4
CANSAT54G2721 Cannabis sativa HOM05D002969 ORTHO05D003308 2.4e-18 95.5 88 54.5
FAN05G1938 Fragaria x ananassa HOM05D002969 ORTHO05D003308 2.4e-18 95.5 83 55.4
Glyma.02G000100 Glycine max HOM05D002969 ORTHO05D003308 2.4e-18 95.5 98 45.9
Medtr3g005240 Medicago truncatula HOM05D002969 ORTHO05D003308 2.4e-18 95.5 85 52.9
TPR.G14707 Trifolium pratense HOM05D002969 ORTHO05D003308 2.4e-18 95.5 97 48.5
Glyma.16G219900 Glycine max HOM05D002969 ORTHO05D003308 3.1e-18 95.1 98 45.9
A07p07070 Brassica napus HOM05D002969 ORTHO05D003308 4.1e-18 94.7 98 46.9
BraA07t28494Z Brassica rapa HOM05D002969 ORTHO05D003308 4.1e-18 94.7 98 46.9
Ca_13957_v3 Cicer arietinum L. HOM05D002969 ORTHO05D003308 4.1e-18 94.7 85 51.8
MSTRG.10956 Avicennia marina HOM05D002969 ORTHO05D003308 5.3e-18 94.4 87 54.0
FAN27G1917 Fragaria x ananassa HOM05D002969 ORTHO05D003308 5.3e-18 94.4 86 51.2
Sed0027017 Sechium edule HOM05D002969 ORTHO05D003308 5.3e-18 94.4 87 54.0
Gohir.A05G405950 Gossypium hirsutum HOM05D002969 ORTHO05D003308 7.0e-18 94.0 98 48.0
Lj7C292T8 Lonicera japonica HOM05D002969 ORTHO05D003308 7.0e-18 94.0 93 50.5
Aa31LG7G2260 Aethionema arabicum HOM05D002969 ORTHO05D003308 1.2e-17 93.2 98 48.0
Lalb_Chr10g0094641 Lupinus albus HOM05D002969 ORTHO05D003308 1.2e-17 93.2 97 46.4
Phvul.007G234600 Phaseolus vulgaris HOM05D002969 ORTHO05D003308 1.6e-17 92.8 98 44.9
Solyc09g009800.3 Solanum lycopersicum HOM05D002969 ORTHO05D003308 1.6e-17 92.8 97 47.4
Sopen09g004560 Solanum pennellii HOM05D002969 ORTHO05D003308 1.6e-17 92.8 97 47.4
SGA_v2.0_scaffold71G23857 Striga asiatica HOM05D002969 ORTHO05D003308 1.6e-17 92.8 81 54.3
BcaC06g35804 Brassica carinata HOM05D002969 ORTHO05D003308 2.0e-17 92.4 98 45.9
C07p10660 Brassica napus HOM05D002969 ORTHO05D003308 2.0e-17 92.4 98 45.9
BolC7t41532H Brassica oleracea HOM05D002969 ORTHO05D003308 2.0e-17 92.4 98 45.9
ATR0618G078 Amborella trichopoda HOM05D002969 ORTHO05D003308 2.6e-17 92.0 95 45.3
Aqoxy7G01394 Aquilegia oxysepala HOM05D002969 ORTHO05D003308 2.6e-17 92.0 85 51.8
ClCG05G007230 Citrullus lanatus HOM05D002969 ORTHO05D003308 2.6e-17 92.0 87 51.7
Ciclev10024687m.g Citrus clementina HOM05D002969 ORTHO05D003308 2.6e-17 92.0 96 47.9
Lsat_1_v5_gn_1_38040 Lactuca sativa HOM05D002969 ORTHO05D003308 2.6e-17 92.0 82 54.9
CsaV3_3G015990 Cucumis sativus L. HOM05D002969 ORTHO05D003308 5.9e-17 90.9 87 51.7
FAN24G1542 Fragaria x ananassa HOM05D002969 ORTHO05D003308 5.9e-17 90.9 86 50.0
Lsat_1_v5_gn_5_75740 Lactuca sativa HOM05D002969 ORTHO05D003308 5.9e-17 90.9 82 52.4
MD11G1308600 Malus domestica HOM05D002969 ORTHO05D003308 5.9e-17 90.9 84 54.8
Rhsim08G0238100 Rhododendron simsii HOM05D002969 ORTHO05D003308 5.9e-17 90.9 83 50.6
FAN15G1247 Fragaria x ananassa HOM05D002969 ORTHO05D003308 1.0e-16 90.1 86 47.7
Psat0s1819g0040 Pisum sativum HOM05D002969 ORTHO05D003308 1.0e-16 90.1 85 50.6
Psat1g003120 Pisum sativum HOM05D002969 ORTHO05D003308 1.0e-16 90.1 85 50.6
Psat5g267240 Pisum sativum HOM05D002969 ORTHO05D003308 1.0e-16 90.1 85 50.6
Eucgr.J02821 Eucalyptus grandis HOM05D002969 ORTHO05D003308 1.3e-16 89.7 85 49.4
CAN.G397.51 Capsicum annuum HOM05D002969 ORTHO05D003308 1.7e-16 89.4 97 46.4
Thhalv10017997m.g Eutrema salsugineum HOM05D002969 ORTHO05D003308 2.2e-16 89.0 98 48.0
FvH4_2g23920 Fragaria vesca HOM05D002969 ORTHO05D003308 2.2e-16 89.0 86 48.8
Migut.I01069 Erythranthe guttata HOM05D002969 ORTHO05D003308 2.9e-16 88.6 93 50.5
Lj5C38T4 Lonicera japonica HOM05D002969 ORTHO05D003308 3.8e-16 88.2 93 48.4
PSO447G0254 Papaver somniferum HOM05D002969 ORTHO05D003308 5.0e-16 87.8 85 51.8
Oeu007563.1 Olea europaea HOM05D002969 ORTHO05D003308 8.5e-16 87.0 95 47.4
CDE02G2049 Ceratophyllum demersum HOM05D002969 ORTHO05D003308 1.5e-15 86.3 80 52.5
Haze_15990 Corylus avellana HOM05D002969 ORTHO05D003308 1.9e-15 85.9 81 51.9
Mapoly0002s0195 Marchantia polymorpha HOM05D002969 ORTHO05D003308 2.5e-15 85.5 93 45.2
Peaxi162Scf00068g02519 Petunia axillaris HOM05D002969 ORTHO05D003308 2.5e-15 85.5 97 44.3
ECA247G3059 Erigeron canadensis HOM05D002969 ORTHO05D003308 3.2e-15 85.1 91 47.3
GSVIVG01016771001 Vitis vinifera HOM05D002969 ORTHO05D003308 3.2e-15 85.1 73 56.2
SalBow6G7155 Salvia bowleyana HOM05D002969 ORTHO05D003308 4.2e-15 84.7 91 46.2
DCAR_016128 Daucus carota HOM05D002969 ORTHO05D003308 7.2e-15 84.0 95 43.2
Phvul.011G011400 Phaseolus vulgaris HOM05D002969 ORTHO05D003308 9.4e-15 83.6 96 44.8
HanXRQChr10g0301861 Helianthus annuus HOM05D002969 ORTHO05D003308 1.2e-14 83.2 85 45.9
FAN02G4452 Fragaria x ananassa HOM05D002969 ORTHO05D003308 2.1e-14 82.4 78 51.3
ECA240G4395 Erigeron canadensis HOM05D002969 ORTHO05D003308 2.7e-14 82.0 83 47.0
PGR102G0955 Punica granatum HOM05D002969 ORTHO05D003308 3.6e-14 81.6 84 47.6
Cfa003558 Carpinus fangiana HOM05D002969 ORTHO05D003308 4.7e-14 81.3 81 49.4
SEGI_12678 Sequoiadendron giganteum HOM05D002969 ORTHO05D003308 6.1e-14 80.9 83 47.0
Nn7g36584 Nelumbo nucifera HOM05D002969 ORTHO05D003308 8.0e-14 80.5 73 56.2
Peaxi162Scf00006g00210 Petunia axillaris HOM05D002969 ORTHO05D003308 1.0e-13 80.1 81 51.9
DCAR_022697 Daucus carota HOM05D002969 ORTHO05D003308 1.4e-13 79.7 81 48.1
AagrBONN_evm.TU.Sc2ySwM_344.4533 Anthoceros agrestis HOM05D002969 ORTHO05D003308 2.3e-13 79.0 93 46.2
Cpa.g.sc34.72 Carica papaya HOM05D002969 ORTHO05D003308 2.3e-13 79.0 73 53.4
Ah.01g009880 Amaranthus hybridus HOM05D002969 ORTHO05D003308 5.2e-13 77.8 90 47.8
Ah.01g009920 Amaranthus hybridus HOM05D002969 ORTHO05D003308 5.2e-13 77.8 90 47.8
AUR62010285 Chenopodium quinoa HOM05D002969 ORTHO05D003308 5.2e-13 77.8 85 47.1
AUR62039104 Chenopodium quinoa HOM05D002969 ORTHO05D003308 6.8e-13 77.4 85 47.1
EL10Ac9g22289 Beta vulgaris HOM05D002969 ORTHO05D003308 8.8e-13 77.0 84 50.0
Thecc.06G115400 Theobroma cacao HOM05D002969 ORTHO05D003308 8.8e-13 77.0 94 44.7
Zm00001eb254840 Zea mays HOM05D002969 ORTHO05D003308 1.5e-12 76.3 36 100.0
Peaxi162Scf00559g00315 Petunia axillaris HOM05D002969 ORTHO05D003308 2.0e-12 75.9 95 42.1
ATR0568G030 Amborella trichopoda HOM05D002969 ORTHO05D003308 3.4e-12 75.1 95 38.9
Ah.01g018170 Amaranthus hybridus HOM05D002969 ORTHO05D003308 4.4e-12 74.7 82 47.6
Pp3c4_16500 Physcomitrium patens HOM05D002969 ORTHO05D003308 4.4e-12 74.7 79 49.4
Sc18g0005650 Simmondsia chinensis HOM05D002969 ORTHO05D003308 7.5e-12 73.9 82 46.3
SMO119G0293 Selaginella moellendorffii HOM05D002969 ORTHO05D003308 2.2e-11 72.4 82 42.7
Duzib192G0334 Durio zibethinus HOM05D002969 ORTHO05D003308 1.4e-10 69.7 91 39.6
CAN.G947.7 Capsicum annuum HOM05D002969 ORTHO05D000105 7.0e-10 67.4 85 42.4
Nitab4.5_0010825g0010 Nicotiana tabacum HOM05D002969 ORTHO05D003308 1.2e-09 66.6 88 40.9
SMO196G0130 Selaginella moellendorffii HOM05D002969 ORTHO05D003308 2.2e-08 62.4 81 43.2
VMungo0540G1895 Vigna mungo HOM05D002969 ORTHO05D003308 2.2e-08 62.4 64 50.0


User provided reference genes

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