Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb011310 Zea mays HOM05D005975 ORTHO05D007373 0.0e+00 1150.6 585 100.0
Os03g0259700 Oryza sativa ssp. japonica HOM05D005975 ORTHO05D007373 4.7e-295 1017.3 578 89.4
FvH4_5g12680 Fragaria vesca HOM05D005975 ORTHO05D007373 3.3e-208 728.8 615 61.0
FAN18G3396 Fragaria x ananassa HOM05D005975 ORTHO05D007373 1.7e-207 726.5 615 60.8
Rhsim08G0136800 Rhododendron simsii HOM05D005975 ORTHO05D007373 1.4e-206 723.4 599 62.1
FAN04G2679 Fragaria x ananassa HOM05D005975 ORTHO05D007373 1.8e-206 723.0 613 60.5
FAN08G0232 Fragaria x ananassa HOM05D005975 ORTHO05D007373 2.4e-206 722.6 617 60.3
MD14G1222100 Malus domestica HOM05D005975 ORTHO05D007373 4.1e-206 721.8 617 61.3
FAN13G1844 Fragaria x ananassa HOM05D005975 ORTHO05D007373 9.1e-206 720.7 611 60.6
Eucgr.B00701 Eucalyptus grandis HOM05D005975 ORTHO05D007373 2.6e-205 719.2 614 60.6
RcHm_v2.0_Chr7g0184651 Rosa chinensis HOM05D005975 ORTHO05D007373 1.0e-204 717.2 616 59.9
PGR083G1175 Punica granatum HOM05D005975 ORTHO05D007373 1.3e-204 716.8 617 59.8
VMungo1309G0041 Vigna mungo HOM05D005975 ORTHO05D007373 2.9e-204 715.7 591 62.6
MD06G1211600 Malus domestica HOM05D005975 ORTHO05D007373 1.1e-203 713.8 614 60.3
TAR622G0473 Trochodendron aralioides HOM05D005975 ORTHO05D007373 3.2e-203 712.2 637 58.7
Ciclev10019197m.g Citrus clementina HOM05D005975 ORTHO05D007373 4.2e-203 711.8 617 60.5
TAR374G1293 Trochodendron aralioides HOM05D005975 ORTHO05D007373 5.5e-203 711.4 637 59.2
GSVIVG01008239001 Vitis vinifera HOM05D005975 ORTHO05D007373 9.4e-203 710.7 592 62.0
Atru.chr9.776 Acer truncatum HOM05D005975 ORTHO05D007373 2.7e-202 709.1 625 59.0
vmacro17674 Vaccinium macrocarpon HOM05D005975 ORTHO05D007373 3.6e-202 708.8 599 60.6
HanXRQChr09g0269781 Helianthus annuus HOM05D005975 ORTHO05D007373 4.7e-202 708.4 601 60.6
Phvul.009G200500 Phaseolus vulgaris HOM05D005975 ORTHO05D007373 1.0e-201 707.2 591 61.8
Thecc.03G028700 Theobroma cacao HOM05D005975 ORTHO05D007373 1.4e-201 706.8 590 61.9
Dinv38586 Davidia involucrata HOM05D005975 ORTHO05D007373 3.9e-201 705.3 591 62.3
Gorai.007G007400 Gossypium raimondii HOM05D005975 ORTHO05D007373 3.9e-201 705.3 620 60.0
Lalb_Chr12g0197601 Lupinus albus HOM05D005975 ORTHO05D007373 3.9e-201 705.3 593 61.2
Ca_23135_v3 Cicer arietinum L. HOM05D005975 ORTHO05D007373 8.8e-201 704.1 566 62.7
Lj1g0009400 Lotus japonicus HOM05D005975 ORTHO05D007373 1.5e-200 703.4 592 61.7
Duzib205G1016 Durio zibethinus HOM05D005975 ORTHO05D007373 2.0e-200 703.0 592 61.7
Glyma.04G152200 Glycine max HOM05D005975 ORTHO05D007373 2.0e-200 703.0 591 60.6
Gohir.A11G007000 Gossypium hirsutum HOM05D005975 ORTHO05D007373 2.6e-200 702.6 620 59.4
Gohir.D11G006100 Gossypium hirsutum HOM05D005975 ORTHO05D007373 2.6e-200 702.6 620 59.7
QL10p022556 Quercus lobata HOM05D005975 ORTHO05D007373 3.3e-200 702.2 597 60.6
ClCG06G015000 Citrullus lanatus HOM05D005975 ORTHO05D007373 5.7e-200 701.4 613 59.9
MBI19_g38388_MAGBIO Magnolia biondii HOM05D005975 ORTHO05D007373 7.4e-200 701.0 624 59.1
AL2G33760 Arabidopsis lyrata HOM05D005975 ORTHO05D007373 9.7e-200 700.7 561 62.9
arahy.Tifrunner.gnm1.ann1.1K5T8S Arachis hypogaea HOM05D005975 ORTHO05D007373 9.7e-200 700.7 619 60.1
Actinidia31028 Actinidia chinensis HOM05D005975 ORTHO05D007373 1.3e-199 700.3 602 61.0
Manes.05G139300 Manihot esculenta HOM05D005975 ORTHO05D007373 1.3e-199 700.3 594 61.6
Lj9A429T54 Lonicera japonica HOM05D005975 ORTHO05D007373 1.7e-199 699.9 616 60.9
Glyma.06G210800 Glycine max HOM05D005975 ORTHO05D007373 2.2e-199 699.5 591 60.6
AT1G73930 Arabidopsis thaliana HOM05D005975 ORTHO05D007373 2.8e-199 699.1 561 62.6
Thhalv10018286m.g Eutrema salsugineum HOM05D005975 ORTHO05D007373 3.7e-199 698.7 567 62.3
Cpa.g.sc549.1 Carica papaya HOM05D005975 ORTHO05D007373 4.8e-199 698.4 592 60.8
CsaV3_1G003650 Cucumis sativus L. HOM05D005975 ORTHO05D007373 4.8e-199 698.4 612 60.0
SGA_v2.0_scaffold25G10981 Striga asiatica HOM05D005975 ORTHO05D007373 4.8e-199 698.4 597 59.8
MELO3C017289.2 Cucumis melo HOM05D005975 ORTHO05D007373 8.2e-199 697.6 613 59.7
ECA232G0421 Erigeron canadensis HOM05D005975 ORTHO05D007373 1.1e-198 697.2 598 60.9
Glyma.17G121100 Glycine max HOM05D005975 ORTHO05D007373 1.4e-198 696.8 591 61.1
Haze_18619 Corylus avellana HOM05D005975 ORTHO05D007373 1.8e-198 696.4 589 60.6
Peaxi162Scf00015g00726 Petunia axillaris HOM05D005975 ORTHO05D007373 2.4e-198 696.0 611 58.9
TPR.G10356 Trifolium pratense HOM05D005975 ORTHO05D007373 2.4e-198 696.0 590 61.0
Nitab4.5_0001599g0180 Nicotiana tabacum HOM05D005975 ORTHO05D007373 3.1e-198 695.7 611 59.2
CiPaw.15G127100 Carya illinoinensis HOM05D005975 ORTHO05D007373 5.3e-198 694.9 612 58.7
Hma1.2p1_0592F.1_g185285 Hydrangea macrophylla HOM05D005975 ORTHO05D007373 5.3e-198 694.9 611 59.6
PSO063G1047 Papaver somniferum HOM05D005975 ORTHO05D007373 5.3e-198 694.9 613 59.4
CARHR067040 Cardamine hirsuta HOM05D005975 ORTHO05D007373 7.0e-198 694.5 584 61.0
Cc04_g07500 Coffea canephora HOM05D005975 ORTHO05D007373 1.6e-197 693.3 586 61.1
Oeu024324.1 Olea europaea HOM05D005975 ORTHO05D007373 4.5e-197 691.8 593 59.5
PSO782G2585 Papaver somniferum HOM05D005975 ORTHO05D007373 7.7e-197 691.0 612 59.3
Psat1g024880 Pisum sativum HOM05D005975 ORTHO05D007373 1.0e-196 690.6 584 60.4
Sed0024013 Sechium edule HOM05D005975 ORTHO05D007373 1.3e-196 690.3 612 59.5
CSS0000913 Camellia sinensis var. sinensis HOM05D005975 ORTHO05D007373 2.9e-196 689.1 604 59.4
DCAR_015134 Daucus carota HOM05D005975 ORTHO05D007373 5.0e-196 688.3 595 60.8
THA.LOC104808292 Tarenaya hassleriana HOM05D005975 ORTHO05D007373 5.0e-196 688.3 562 61.6
Solyc03g119750.4 Solanum lycopersicum HOM05D005975 ORTHO05D007373 6.5e-196 688.0 594 59.3
PGSC0003DMG400005625 Solanum tuberosum HOM05D005975 ORTHO05D007373 1.5e-195 686.8 594 59.1
BolC2t09180H Brassica oleracea HOM05D005975 ORTHO05D007373 1.9e-195 686.4 558 62.4
Sopen03g038600 Solanum pennellii HOM05D005975 ORTHO05D007373 1.9e-195 686.4 600 58.5
Ah.11g047090 Amaranthus hybridus HOM05D005975 ORTHO05D007373 7.2e-195 684.5 597 60.1
Migut.I00389 Erythranthe guttata HOM05D005975 ORTHO05D007373 7.2e-195 684.5 620 56.8
BcaB05g24819 Brassica carinata HOM05D005975 ORTHO05D007373 9.4e-195 684.1 556 62.8
BraA02t06937Z Brassica rapa HOM05D005975 ORTHO05D007373 2.7e-194 682.6 557 62.1
A02p18950 Brassica napus HOM05D005975 ORTHO05D007373 4.7e-194 681.8 557 62.1
CAN.G438.116 Capsicum annuum HOM05D005975 ORTHO05D007373 4.7e-194 681.8 618 56.8
Sabra12G0043300 Salix brachista HOM05D005975 ORTHO05D007373 4.7e-194 681.8 596 60.1
Nitab4.5_0000410g0070 Nicotiana tabacum HOM05D005975 ORTHO05D007373 6.1e-194 681.4 593 59.9
Aqoxy3G03906 Aquilegia oxysepala HOM05D005975 ORTHO05D007373 1.4e-193 680.2 585 59.7
BcaC03g15468 Brassica carinata HOM05D005975 ORTHO05D007373 1.8e-193 679.9 561 61.7
AUR62036958 Chenopodium quinoa HOM05D005975 ORTHO05D007373 1.8e-193 679.9 619 57.7
VMungo1215G0359 Vigna mungo HOM05D005975 ORTHO05D007373 1.8e-193 679.9 586 59.4
EL10Ac5g11254 Beta vulgaris HOM05D005975 ORTHO05D007373 3.0e-193 679.1 619 57.7
AUR62032193 Chenopodium quinoa HOM05D005975 ORTHO05D007373 5.2e-193 678.3 619 57.4
Potri.015G049900 Populus trichocarpa HOM05D005975 ORTHO05D007373 5.2e-193 678.3 591 59.6
Potri.012G060200 Populus trichocarpa HOM05D005975 ORTHO05D007373 8.8e-193 677.6 590 59.5
MSTRG.22940 Avicennia marina HOM05D005975 ORTHO05D007373 1.2e-192 677.2 616 57.3
C02p31490 Brassica napus HOM05D005975 ORTHO05D007373 1.3e-191 673.7 563 61.1
Hund02524 Selenicereus undatus HOM05D005975 ORTHO05D007373 1.7e-191 673.3 618 57.1
Lsat_1_v5_gn_3_10441 Lactuca sativa HOM05D005975 ORTHO05D007373 1.1e-190 670.6 549 62.1
Sc10g0009550 Simmondsia chinensis HOM05D005975 ORTHO05D007373 3.5e-189 665.6 616 57.8
Hund10002 Selenicereus undatus HOM05D005975 ORTHO05D007373 2.2e-188 662.9 591 58.2
Sp5g29130 Schrenkiella parvula HOM05D005975 ORTHO05D007373 5.0e-188 661.8 549 61.0
Prupe.5G217600 Prunus persica HOM05D005975 ORTHO05D007373 2.7e-186 656.0 470 68.9
unitig_22.g6248 Utricularia gibba HOM05D005975 ORTHO05D007373 1.4e-182 643.7 593 56.7
ATR0753G136 Amborella trichopoda HOM05D005975 ORTHO05D007373 5.4e-182 641.7 655 53.4
Aa31LG4G4220 Aethionema arabicum HOM05D005975 ORTHO05D007373 1.2e-181 640.6 566 59.2
SEGI_09157 Sequoiadendron giganteum HOM05D005975 ORTHO05D007373 2.1e-178 629.8 718 49.3
Phvul.003G176900 Phaseolus vulgaris HOM05D005975 ORTHO05D007373 1.1e-174 617.5 470 64.7
Pp3c4_11450 Physcomitrium patens HOM05D005975 ORTHO05D007373 3.6e-170 602.4 690 49.1
Pp3c12_18170 Physcomitrium patens HOM05D005975 ORTHO05D007373 3.0e-169 599.4 690 48.7
SalBow5G4970 Salvia bowleyana HOM05D005975 ORTHO05D007373 4.0e-169 599.0 558 56.3
Mapoly0016s0160 Marchantia polymorpha HOM05D005975 ORTHO05D007373 2.0e-165 586.6 489 60.7
AagrBONN_evm.TU.Sc2ySwM_228.4839 Anthoceros agrestis HOM05D005975 ORTHO05D007373 6.0e-165 585.1 486 61.7
SMO367G0788 Selaginella moellendorffii HOM05D005975 ORTHO05D007373 1.6e-157 560.5 559 53.0
Glyma.05G013100 Glycine max HOM05D005975 ORTHO05D007373 1.4e-150 537.3 553 52.6
Carub.0002s2070 Capsella rubella HOM05D005975 ORTHO05D007373 2.7e-149 533.1 406 65.5
COL.COLO4_22722 Corchorus olitorius HOM05D005975 ORTHO05D007373 2.7e-149 533.1 397 66.8
Sabra15G0077800 Salix brachista HOM05D005975 ORTHO05D007373 1.3e-148 530.8 581 51.6
CBR_g30105 Chara braunii HOM05D005975 ORTHO05D007373 2.5e-147 526.6 511 55.4
Zm00001eb237870 Zea mays HOM05D005975 ORTHO05D007373 2.1e-138 496.9 514 58.8
CDE05G1454 Ceratophyllum demersum HOM05D005975 ORTHO05D007373 9.0e-137 491.5 535 51.8
HPP92_016579 Vanilla planifolia HOM05D005975 ORTHO05D007373 2.1e-122 443.7 297 73.4
Nn3g17719 Nelumbo nucifera HOM05D005975 ORTHO05D007373 2.3e-116 423.7 438 53.0
TAR622G1340 Trochodendron aralioides HOM05D005975 ORTHO05D007373 2.6e-112 410.2 372 55.4
arahy.Tifrunner.gnm1.ann1.CEL6SJ Arachis hypogaea HOM05D005975 ORTHO05D007373 7.9e-101 372.1 265 69.8
CDE05G3359 Ceratophyllum demersum HOM05D005975 ORTHO05D007373 3.9e-92 343.2 368 53.5
HPP92_016580 Vanilla planifolia HOM05D005975 ORTHO05D007373 2.7e-85 320.5 193 78.8
SMO146G0145 Selaginella moellendorffii HOM05D005975 ORTHO05D007373 2.2e-82 310.8 339 51.3
Zm00001eb078910 Zea mays HOM05D005975 ORTHO05D007373 3.7e-82 310.1 155 98.1
BcaB05g24817 Brassica carinata HOM05D005975 ORTHO05D007373 3.2e-78 297.0 216 66.7
PSO074G0001 Papaver somniferum HOM05D005975 ORTHO05D007373 4.0e-76 290.0 303 52.8
Cre14.g633500 Chlamydomonas reinhardtii HOM05D005975 ORTHO05D007373 1.7e-39 168.3 323 34.1
Nn3g18207 Nelumbo nucifera HOM05D005975 ORTHO05D007373 2.5e-22 111.3 111 55.0
CDE05G0573 Ceratophyllum demersum HOM05D005975 ORTHO05D007373 1.1e-20 105.9 75 61.3
Nn4g23789 Nelumbo nucifera HOM05D005975 ORTHO05D007373 5.6e-06 57.0 121 28.1


User provided reference genes

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