Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb011170 Zea mays HOM05D006982 ORTHO05D008909 3.0e-109 398.7 219 100.0
Os03g0257000 Oryza sativa ssp. japonica HOM05D006982 ORTHO05D008909 1.3e-83 313.5 216 72.7
Os03g0209700 Oryza sativa ssp. japonica HOM05D006982 ORTHO05D008909 5.4e-79 298.1 160 88.8
Nn4g23351 Nelumbo nucifera HOM05D006982 ORTHO05D008909 1.3e-64 250.4 153 71.9
Atru.chr8.390 Acer truncatum HOM05D006982 ORTHO05D008909 6.5e-64 248.1 152 72.4
Duzib187G0332 Durio zibethinus HOM05D006982 ORTHO05D008909 2.5e-63 246.1 161 70.2
Potri.017G090400 Populus trichocarpa HOM05D006982 ORTHO05D008909 4.2e-63 245.4 158 72.2
Dinv11484 Davidia involucrata HOM05D006982 ORTHO05D008909 7.1e-63 244.6 156 68.6
Thecc.04G091200 Theobroma cacao HOM05D006982 ORTHO05D008909 9.3e-63 244.2 155 70.3
Manes.01G098700 Manihot esculenta HOM05D006982 ORTHO05D008909 2.1e-62 243.0 150 72.0
TAR629G3328 Trochodendron aralioides HOM05D006982 ORTHO05D008909 2.1e-62 243.0 151 69.5
GSVIVG01011493001 Vitis vinifera HOM05D006982 ORTHO05D008909 2.1e-62 243.0 152 71.1
Rhsim10G0045300 Rhododendron simsii HOM05D006982 ORTHO05D008909 3.5e-62 242.3 152 69.7
vmacro05662 Vaccinium macrocarpon HOM05D006982 ORTHO05D008909 4.6e-62 241.9 152 69.7
CANSAT64G0008 Cannabis sativa HOM05D006982 ORTHO05D008909 1.3e-61 240.4 157 68.8
Thhalv10005014m.g Eutrema salsugineum HOM05D006982 ORTHO05D008909 1.3e-61 240.4 152 69.1
Haze_14468 Corylus avellana HOM05D006982 ORTHO05D008909 2.3e-61 239.6 158 70.3
Hma1.2p1_1813F.1_g303760 Hydrangea macrophylla HOM05D006982 ORTHO05D008909 2.3e-61 239.6 153 69.9
Hma1.2p1_3044F.1_g332060 Hydrangea macrophylla HOM05D006982 ORTHO05D008909 2.3e-61 239.6 153 69.9
Nitab4.5_0005196g0040 Nicotiana tabacum HOM05D006982 ORTHO05D008909 2.3e-61 239.6 161 66.5
Sp2g17880 Schrenkiella parvula HOM05D006982 ORTHO05D008909 2.3e-61 239.6 152 69.1
Carub.0005s0799 Capsella rubella HOM05D006982 ORTHO05D008909 3.0e-61 239.2 152 68.4
A06p40000 Brassica napus HOM05D006982 ORTHO05D008909 3.9e-61 238.8 150 70.7
RcHm_v2.0_Chr2g0166501 Rosa chinensis HOM05D006982 ORTHO05D008909 3.9e-61 238.8 158 67.7
Aqoxy3G00454 Aquilegia oxysepala HOM05D006982 ORTHO05D008909 6.7e-61 238.0 151 69.5
ECA238G0675 Erigeron canadensis HOM05D006982 ORTHO05D008909 6.7e-61 238.0 152 68.4
AL5G19280 Arabidopsis lyrata HOM05D006982 ORTHO05D008909 8.7e-61 237.7 152 67.8
Cc07_g04010 Coffea canephora HOM05D006982 ORTHO05D008909 8.7e-61 237.7 156 67.3
PGR004G0184 Punica granatum HOM05D006982 ORTHO05D008909 1.1e-60 237.3 152 69.7
Nitab4.5_0001637g0060 Nicotiana tabacum HOM05D006982 ORTHO05D008909 1.5e-60 236.9 161 65.8
AT3G29280 Arabidopsis thaliana HOM05D006982 ORTHO05D008909 1.9e-60 236.5 152 67.8
CARHR292480 Cardamine hirsuta HOM05D006982 ORTHO05D008909 1.9e-60 236.5 152 67.1
FvH4_6g47420 Fragaria vesca HOM05D006982 ORTHO05D008909 1.9e-60 236.5 154 68.2
FAN14G3321 Fragaria x ananassa HOM05D006982 ORTHO05D008909 1.9e-60 236.5 154 68.2
HanXRQChr07g0199461 Helianthus annuus HOM05D006982 ORTHO05D008909 3.3e-60 235.7 154 67.5
TPR.G26172 Trifolium pratense HOM05D006982 ORTHO05D008909 5.7e-60 235.0 154 67.5
Gohir.D09G010400 Gossypium hirsutum HOM05D006982 ORTHO05D008909 7.4e-60 234.6 152 69.7
Aa31LG2G3980 Aethionema arabicum HOM05D006982 ORTHO05D008909 9.6e-60 234.2 146 69.2
BcaB07g30087 Brassica carinata HOM05D006982 ORTHO05D008909 9.6e-60 234.2 151 67.5
FAN02G3418 Fragaria x ananassa HOM05D006982 ORTHO05D008909 9.6e-60 234.2 154 66.9
MD09G1061600 Malus domestica HOM05D006982 ORTHO05D008909 9.6e-60 234.2 156 68.6
CAN.G734.5 Capsicum annuum HOM05D006982 ORTHO05D008909 1.3e-59 233.8 161 66.5
FAN09G4389 Fragaria x ananassa HOM05D006982 ORTHO05D008909 1.3e-59 233.8 154 67.5
Lj2g0023544 Lotus japonicus HOM05D006982 ORTHO05D008909 1.3e-59 233.8 147 69.4
Phvul.004G033900 Phaseolus vulgaris HOM05D006982 ORTHO05D008909 1.3e-59 233.8 155 69.7
Gorai.006G012000 Gossypium raimondii HOM05D006982 ORTHO05D008909 1.6e-59 233.4 152 69.1
A02p36510 Brassica napus HOM05D006982 ORTHO05D008909 2.8e-59 232.6 152 66.4
BolC7t44339H Brassica oleracea HOM05D006982 ORTHO05D008909 2.8e-59 232.6 146 69.9
BraA02t08647Z Brassica rapa HOM05D006982 ORTHO05D008909 2.8e-59 232.6 152 66.4
Ciclev10012958m.g Citrus clementina HOM05D006982 ORTHO05D008909 2.8e-59 232.6 152 68.4
SGA_v2.0_scaffold4G02409 Striga asiatica HOM05D006982 ORTHO05D008909 2.8e-59 232.6 153 65.4
TWI60G0050 Tripterygium wilfordii HOM05D006982 ORTHO05D008909 2.8e-59 232.6 152 69.1
CiPaw.03G091200 Carya illinoinensis HOM05D006982 ORTHO05D008909 3.7e-59 232.3 158 67.7
ClCG05G014130 Citrullus lanatus HOM05D006982 ORTHO05D008909 3.7e-59 232.3 156 63.5
Eucgr.I01983 Eucalyptus grandis HOM05D006982 ORTHO05D008909 3.7e-59 232.3 154 66.9
SalBow1G5236 Salvia bowleyana HOM05D006982 ORTHO05D008909 3.7e-59 232.3 159 64.2
RcHm_v2.0_Chr2g0166491 Rosa chinensis HOM05D006982 ORTHO05D008909 4.8e-59 231.9 156 67.3
Glyma.13G058700 Glycine max HOM05D006982 ORTHO05D008909 6.3e-59 231.5 157 69.4
Prupe.3G258600 Prunus persica HOM05D006982 ORTHO05D008909 6.3e-59 231.5 168 66.1
Solyc03g013250.4 Solanum lycopersicum HOM05D006982 ORTHO05D008909 6.3e-59 231.5 161 64.6
VMungo0464G0061 Vigna mungo HOM05D006982 ORTHO05D008909 6.3e-59 231.5 155 68.4
C02p55480 Brassica napus HOM05D006982 ORTHO05D008909 8.2e-59 231.1 152 65.8
BolC2t11604H Brassica oleracea HOM05D006982 ORTHO05D008909 8.2e-59 231.1 152 65.8
CsaV3_3G026330 Cucumis sativus L. HOM05D006982 ORTHO05D008909 8.2e-59 231.1 156 63.5
Migut.H00650 Erythranthe guttata HOM05D006982 ORTHO05D008909 8.2e-59 231.1 155 67.1
Sopen03g016600 Solanum pennellii HOM05D006982 ORTHO05D008909 8.2e-59 231.1 161 64.6
MSTRG.3019 Avicennia marina HOM05D006982 ORTHO05D008909 1.1e-58 230.7 153 66.0
Lsat_1_v5_gn_2_87800 Lactuca sativa HOM05D006982 ORTHO05D008909 1.1e-58 230.7 147 72.1
BcaC03g17569 Brassica carinata HOM05D006982 ORTHO05D008909 2.4e-58 229.6 150 66.7
PSO017G1487 Papaver somniferum HOM05D006982 ORTHO05D008909 2.4e-58 229.6 152 68.4
MELO3C014935.2 Cucumis melo HOM05D006982 ORTHO05D008909 6.9e-58 228.0 156 62.8
Glyma.19G027800 Glycine max HOM05D006982 ORTHO05D008909 6.9e-58 228.0 151 68.2
Psat1g070160 Pisum sativum HOM05D006982 ORTHO05D008909 6.9e-58 228.0 155 63.9
THA.LOC104805498 Tarenaya hassleriana HOM05D006982 ORTHO05D008909 9.0e-58 227.6 152 63.2
Lalb_Chr02g0159031 Lupinus albus HOM05D006982 ORTHO05D008909 1.5e-57 226.9 148 69.6
PSO478G0313 Papaver somniferum HOM05D006982 ORTHO05D008909 1.5e-57 226.9 152 67.1
QL02p039506 Quercus lobata HOM05D006982 ORTHO05D008909 2.0e-57 226.5 151 66.9
Sc11g0004740 Simmondsia chinensis HOM05D006982 ORTHO05D008909 3.4e-57 225.7 151 65.6
Sed0004734 Sechium edule HOM05D006982 ORTHO05D008909 4.5e-57 225.3 156 62.8
BraA06t26915Z Brassica rapa HOM05D006982 ORTHO05D008909 7.6e-57 224.6 151 67.5
Sabra17G0079600 Salix brachista HOM05D006982 ORTHO05D008909 1.0e-56 224.2 199 56.8
AUR62042567 Chenopodium quinoa HOM05D006982 ORTHO05D008909 1.3e-56 223.8 151 64.9
Actinidia07827 Actinidia chinensis HOM05D006982 ORTHO05D008909 3.2e-55 219.2 138 68.8
EL10Ac2g03084 Beta vulgaris HOM05D006982 ORTHO05D008909 4.2e-55 218.8 157 61.1
ATR0064G116 Amborella trichopoda HOM05D006982 ORTHO05D008909 2.1e-54 216.5 157 61.8
Cpa.g.sc14.148 Carica papaya HOM05D006982 ORTHO05D008909 1.3e-53 213.8 134 70.9
SEGI_41437 Sequoiadendron giganteum HOM05D006982 ORTHO05D008909 1.1e-52 210.7 152 60.5
Gohir.A09G011401 Gossypium hirsutum HOM05D006982 ORTHO05D008909 3.8e-48 195.7 163 60.7
Hund13166 Selenicereus undatus HOM05D006982 ORTHO05D008909 3.8e-48 195.7 150 63.3
SMO164G0193 Selaginella moellendorffii HOM05D006982 ORTHO05D008909 4.2e-47 192.2 150 54.7
CDE04G2259 Ceratophyllum demersum HOM05D006982 ORTHO05D008909 3.9e-45 185.7 124 64.5
Lj4A116T80 Lonicera japonica HOM05D006982 ORTHO05D008909 1.5e-44 183.7 119 67.2
BolC2t11598H Brassica oleracea HOM05D006982 ORTHO05D008909 9.7e-44 181.0 132 61.4
COL.COLO4_21380 Corchorus olitorius HOM05D006982 ORTHO05D008909 1.3e-43 180.6 119 65.5
Pp3c21_18720 Physcomitrium patens HOM05D006982 ORTHO05D008909 1.3e-43 180.6 150 54.0
Peaxi162Scf00451g00425 Petunia axillaris HOM05D006982 ORTHO05D008909 8.2e-43 177.9 161 53.4
Ah.10g031970 Amaranthus hybridus HOM05D006982 ORTHO05D008909 1.2e-41 174.1 175 50.3
Medtr6g013815 Medicago truncatula HOM05D006982 ORTHO05D008909 1.3e-40 170.6 117 62.4
unitig_899.g15159 Utricularia gibba HOM05D006982 ORTHO05D008909 7.2e-39 164.9 153 54.2
arahy.Tifrunner.gnm1.ann1.NGZQ86 Arachis hypogaea HOM05D006982 ORTHO05D008909 1.7e-35 153.7 153 51.0
arahy.Tifrunner.gnm1.ann1.84WVAW Arachis hypogaea HOM05D006982 ORTHO05D008909 4.8e-35 152.1 157 51.6
C07p38170 Brassica napus HOM05D006982 ORTHO05D008909 1.1e-31 141.0 91 64.8
FAN05G3993 Fragaria x ananassa HOM05D006982 ORTHO05D008909 3.6e-30 136.0 87 73.6
SHI03750 Sapria himalayana HOM05D000002 ORTHO05D000001 4.7e-30 135.6 127 50.4
CSS0035536 Camellia sinensis var. sinensis HOM05D006982 ORTHO05D008909 1.7e-27 127.1 78 69.2
C02p55410 Brassica napus HOM05D006982 ORTHO05D008909 1.4e-26 124.0 114 54.4
TPR.G3955 Trifolium pratense HOM05D006982 ORTHO05D008909 2.3e-21 106.7 58 82.8
Medtr6g013805 Medicago truncatula HOM05D006982 ORTHO05D008909 2.7e-09 66.6 42 73.8
CSS0038093 Camellia sinensis var. sinensis HOM05D006982 ORTHO05D008909 3.5e-09 66.2 36 80.6
AUR62018155 Chenopodium quinoa HOM05D006982 ORTHO05D008909 3.5e-09 66.2 54 51.9
AUR62006323 Chenopodium quinoa HOM05D003441 ORTHO05D044017 1.3e-08 64.3 140 33.6
Lj4A116T81 Lonicera japonica HOM05D006982 ORTHO05D008909 1.5e-07 60.8 32 78.1
PGSC0003DMG400033554 Solanum tuberosum HOM05D006982 ORTHO05D008909 5.6e-07 58.9 43 58.1
SHI03749 Sapria himalayana HOM05D006982 ORTHO05D000001 8.0e-06 55.1 34 67.6


User provided reference genes

Program Settings