Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb010960 Zea mays HOM05D007869 ORTHO05D009962 8.5e-185 650.2 331 100.0
Zm00001eb398460 Zea mays HOM05D007869 ORTHO05D009962 1.1e-168 596.7 337 90.8
Os03g0253600 Oryza sativa ssp. japonica HOM05D007869 ORTHO05D009962 4.0e-158 561.6 335 86.6
Os10g0200700 Oryza sativa ssp. japonica HOM05D007869 ORTHO05D009962 9.0e-126 454.1 322 73.9
HPP92_007374 Vanilla planifolia HOM05D007869 ORTHO05D009962 7.2e-75 285.0 294 52.4
Nn3g18755 Nelumbo nucifera HOM05D007869 ORTHO05D009962 6.5e-68 261.9 253 51.4
TAR374G1227 Trochodendron aralioides HOM05D007869 ORTHO05D009962 5.5e-67 258.8 280 48.9
Sabra14G0079800 Salix brachista HOM05D007869 ORTHO05D009962 9.4e-67 258.1 304 47.4
Prupe.2G203300 Prunus persica HOM05D007869 ORTHO05D009962 8.0e-66 255.0 301 45.2
CiPaw.02G045900 Carya illinoinensis HOM05D007869 ORTHO05D009962 1.0e-65 254.6 280 47.9
CsaV3_6G008420 Cucumis sativus L. HOM05D007869 ORTHO05D009962 3.0e-65 253.1 274 50.0
Potri.014G108300 Populus trichocarpa HOM05D007869 ORTHO05D009962 3.0e-65 253.1 316 44.9
RcHm_v2.0_Chr1g0361741 Rosa chinensis HOM05D007869 ORTHO05D009962 4.0e-65 252.7 292 46.9
Haze_15765 Corylus avellana HOM05D007869 ORTHO05D009962 5.2e-65 252.3 299 45.8
ClCG06G002380 Citrullus lanatus HOM05D007869 ORTHO05D009962 6.8e-65 251.9 270 50.4
Sabra02G0132700 Salix brachista HOM05D007869 ORTHO05D009962 1.2e-64 251.1 295 48.1
Cfa003717 Carpinus fangiana HOM05D007869 ORTHO05D009962 4.4e-64 249.2 299 46.2
MBI04_g38990_MAGBIO Magnolia biondii HOM05D007869 ORTHO05D009962 4.4e-64 249.2 295 46.4
Glyma.09G283900 Glycine max HOM05D007869 ORTHO05D009962 5.7e-64 248.8 310 44.2
CANSAT56G0171 Cannabis sativa HOM05D007869 ORTHO05D009962 1.7e-63 247.3 247 49.4
Glyma.20G001800 Glycine max HOM05D007869 ORTHO05D009962 1.7e-63 247.3 309 44.0
Duzib138G0629 Durio zibethinus HOM05D007869 ORTHO05D009962 3.7e-63 246.1 273 47.3
Phvul.003G003700 Phaseolus vulgaris HOM05D007869 ORTHO05D009962 8.3e-63 245.0 286 45.1
Manes.05G005500 Manihot esculenta HOM05D007869 ORTHO05D009962 1.8e-62 243.8 276 48.2
FAN06G3475 Fragaria x ananassa HOM05D007869 ORTHO05D009962 5.4e-62 242.3 292 46.6
FAN10G0101 Fragaria x ananassa HOM05D007869 ORTHO05D009962 5.4e-62 242.3 292 46.2
Cpa.g.sc57.67 Carica papaya HOM05D007869 ORTHO05D009962 9.1e-62 241.5 281 46.3
COL.COLO4_23074 Corchorus olitorius HOM05D007869 ORTHO05D009962 9.1e-62 241.5 286 45.8
Atru.chr5.803 Acer truncatum HOM05D007869 ORTHO05D009962 3.5e-61 239.6 276 47.1
Ciclev10021277m.g Citrus clementina HOM05D007869 ORTHO05D009962 3.5e-61 239.6 284 48.2
Thhalv10009953m.g Eutrema salsugineum HOM05D007869 ORTHO05D009962 3.5e-61 239.6 249 47.0
TWI14G0946 Tripterygium wilfordii HOM05D007869 ORTHO05D009962 3.5e-61 239.6 274 45.3
FAN03G1443 Fragaria x ananassa HOM05D007869 ORTHO05D009962 4.5e-61 239.2 292 45.9
FAN03G2169 Fragaria x ananassa HOM05D007869 ORTHO05D009962 4.5e-61 239.2 292 45.9
FAN06G2096 Fragaria x ananassa HOM05D007869 ORTHO05D009962 5.9e-61 238.8 292 45.5
Thecc.01G330400 Theobroma cacao HOM05D007869 ORTHO05D009962 7.7e-61 238.4 276 46.4
EL10Ac1g00161 Beta vulgaris HOM05D007869 ORTHO05D009962 1.0e-60 238.0 276 44.9
Lj2g0022280 Lotus japonicus HOM05D007869 ORTHO05D009962 2.2e-60 236.9 281 45.2
Sc01g0002100 Simmondsia chinensis HOM05D007869 ORTHO05D009962 3.8e-60 236.1 266 45.1
VMungo0251G2255 Vigna mungo HOM05D007869 ORTHO05D009962 1.1e-59 234.6 278 45.3
FAN10G1242 Fragaria x ananassa HOM05D007869 ORTHO05D009962 1.5e-59 234.2 238 49.2
THA.LOC104825914 Tarenaya hassleriana HOM05D007869 ORTHO05D009962 3.2e-59 233.0 248 47.6
Medtr1g038260 Medicago truncatula HOM05D007869 ORTHO05D009962 1.2e-58 231.1 279 41.6
Sed0016589 Sechium edule HOM05D007869 ORTHO05D009962 1.2e-58 231.1 292 45.9
TPR.G29782 Trifolium pratense HOM05D007869 ORTHO05D009962 1.2e-58 231.1 282 40.8
Lalb_Chr04g0258981 Lupinus albus HOM05D007869 ORTHO05D009962 1.6e-58 230.7 283 43.5
FAN01G2503 Fragaria x ananassa HOM05D007869 ORTHO05D009962 2.1e-58 230.3 238 48.7
MELO3C022297.2 Cucumis melo HOM05D007869 ORTHO05D009962 6.1e-58 228.8 272 47.4
AUR62004577 Chenopodium quinoa HOM05D007869 ORTHO05D009962 1.0e-57 228.0 254 45.3
Lalb_Chr17g0337801 Lupinus albus HOM05D007869 ORTHO05D009962 2.3e-57 226.9 278 42.8
Psat6g099760 Pisum sativum HOM05D007869 ORTHO05D009962 4.0e-57 226.1 279 42.3
BolC5t28887H Brassica oleracea HOM05D007869 ORTHO05D009962 5.2e-57 225.7 250 46.4
BraA10t42381Z Brassica rapa HOM05D007869 ORTHO05D009962 5.2e-57 225.7 251 46.6
MBI04_g27772_MAGBIO Magnolia biondii HOM05D007869 ORTHO05D009962 6.8e-57 225.3 244 50.0
C05p01060 Brassica napus HOM05D007869 ORTHO05D009962 1.2e-56 224.6 250 46.4
A10p01030 Brassica napus HOM05D007869 ORTHO05D009962 1.5e-56 224.2 251 46.6
CARHR001570 Cardamine hirsuta HOM05D007869 ORTHO05D009962 5.7e-56 222.2 250 43.2
AUR62023523 Chenopodium quinoa HOM05D007869 ORTHO05D009962 5.7e-56 222.2 254 44.1
PSO384G3553 Papaver somniferum HOM05D007869 ORTHO05D009962 7.5e-56 221.9 336 42.0
Ah.05g178800 Amaranthus hybridus HOM05D007869 ORTHO05D009962 1.7e-55 220.7 252 43.7
Carub.0001s0129 Capsella rubella HOM05D007869 ORTHO05D009962 1.7e-55 220.7 255 43.9
BcaC05g24607 Brassica carinata HOM05D007869 ORTHO05D009962 2.2e-55 220.3 248 45.6
ATR0579G134 Amborella trichopoda HOM05D007869 ORTHO05D009962 2.8e-55 219.9 294 42.9
Sp1g01350 Schrenkiella parvula HOM05D007869 ORTHO05D009962 4.9e-55 219.2 249 44.6
CSS0017560 Camellia sinensis var. sinensis HOM05D007869 ORTHO05D009962 1.8e-54 217.2 224 49.6
arahy.Tifrunner.gnm1.ann1.2P25JP Arachis hypogaea HOM05D007869 ORTHO05D009962 5.0e-52 209.1 261 44.4
PSO135G1025 Papaver somniferum HOM05D007869 ORTHO05D009962 6.6e-52 208.8 306 41.8
Aa31LG1G10230 Aethionema arabicum HOM05D007869 ORTHO05D009962 1.5e-51 207.6 253 41.9
arahy.Tifrunner.gnm1.ann1.WBP5Q2 Arachis hypogaea HOM05D007869 ORTHO05D009962 1.9e-51 207.2 262 43.1
AT2G41610 Arabidopsis thaliana HOM05D007869 ORTHO05D009962 7.3e-51 205.3 252 42.5
Actinidia28076 Actinidia chinensis HOM05D007869 ORTHO05D009962 1.0e-49 201.4 223 48.0
AL4G39680 Arabidopsis lyrata HOM05D007869 ORTHO05D009962 1.2e-48 198.0 261 40.6
Lju170C22T1 Lonicera japonica HOM05D007869 ORTHO05D009962 3.7e-47 193.0 195 48.2
FvH4_7g18090 Fragaria vesca HOM05D007869 ORTHO05D009962 2.7e-45 186.8 199 51.3
Medtr1g038290 Medicago truncatula HOM05D007869 ORTHO05D009962 4.7e-42 176.0 279 36.2
Gorai.004G148700 Gossypium raimondii HOM05D007869 ORTHO05D009962 1.0e-41 174.9 172 49.4
FvH4_7g18120 Fragaria vesca HOM05D007869 ORTHO05D009962 1.8e-41 174.1 145 56.6
Gohir.A08G122700 Gossypium hirsutum HOM05D007869 ORTHO05D009962 1.8e-41 174.1 172 49.4
Gohir.D08G144000 Gossypium hirsutum HOM05D007869 ORTHO05D009962 1.8e-41 174.1 172 49.4
Rhsim01G0181500 Rhododendron simsii HOM05D007869 ORTHO05D009962 4.1e-38 162.9 173 48.6
Dinv32655 Davidia involucrata HOM05D007869 ORTHO05D009962 3.0e-28 130.2 134 47.8
SEGI_25376 Sequoiadendron giganteum HOM05D007869 ORTHO05D009962 3.9e-12 76.6 107 43.9
Duzib133G0538 Durio zibethinus HOM05D007869 ORTHO05D009962 8.1e-10 68.9 174 27.6


User provided reference genes

Program Settings