Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb010690 Zea mays HOM05D005662 ORTHO05D007004 7.3e-147 523.9 262 100.0
Os03g0249300 Oryza sativa ssp. japonica HOM05D005662 ORTHO05D007004 2.6e-83 312.8 265 64.9
Os10g0170000 Oryza sativa ssp. japonica HOM05D005662 ORTHO05D007004 7.0e-65 251.5 263 53.6
Zm00001eb224250 Zea mays HOM05D005662 ORTHO05D007004 1.1e-57 227.6 266 50.0
Nn4g26371 Nelumbo nucifera HOM05D005662 ORTHO05D007004 4.2e-54 215.7 270 47.8
MD07G1257000 Malus domestica HOM05D005662 ORTHO05D007004 2.6e-51 206.5 266 45.9
MSTRG.8809 Avicennia marina HOM05D005662 ORTHO05D007004 3.4e-51 206.1 266 43.6
CiPaw.03G096300 Carya illinoinensis HOM05D005662 ORTHO05D007004 4.4e-51 205.7 265 43.4
Potri.012G128500 Populus trichocarpa HOM05D005662 ORTHO05D007004 4.4e-51 205.7 266 44.4
HPP92_004603 Vanilla planifolia HOM05D005662 ORTHO05D007004 5.7e-51 205.3 265 47.9
HanXRQChr08g0223561 Helianthus annuus HOM05D005662 ORTHO05D007004 7.5e-51 204.9 263 45.2
CDE02G0217 Ceratophyllum demersum HOM05D005662 ORTHO05D007004 9.8e-51 204.5 270 47.4
QL09p018886 Quercus lobata HOM05D005662 ORTHO05D007004 2.2e-50 203.4 266 44.7
COL.COLO4_14166 Corchorus olitorius HOM05D005662 ORTHO05D007004 4.9e-50 202.2 264 47.3
Hma1.2p1_0654F.1_g196460 Hydrangea macrophylla HOM05D005662 ORTHO05D007004 4.9e-50 202.2 267 42.7
Cc02_g04010 Coffea canephora HOM05D005662 ORTHO05D007004 1.4e-49 200.7 265 45.3
MBI12_g31644_MAGBIO Magnolia biondii HOM05D005662 ORTHO05D007004 2.4e-49 199.9 267 44.9
Prupe.2G281200 Prunus persica HOM05D005662 ORTHO05D007004 2.4e-49 199.9 265 45.7
TAR375G0912 Trochodendron aralioides HOM05D005662 ORTHO05D007004 3.2e-49 199.5 258 45.0
Gorai.001G237900 Gossypium raimondii HOM05D005662 ORTHO05D007004 4.1e-49 199.1 270 47.4
Lsat_1_v5_gn_8_9401 Lactuca sativa HOM05D005662 ORTHO05D007004 7.0e-49 198.4 267 45.3
Atru.chr1.651 Acer truncatum HOM05D005662 ORTHO05D007004 9.2e-49 198.0 268 44.8
TWI39G1176 Tripterygium wilfordii HOM05D005662 ORTHO05D007004 9.2e-49 198.0 265 44.9
Gohir.D07G210500 Gossypium hirsutum HOM05D005662 ORTHO05D007004 1.2e-48 197.6 270 47.0
Ciclev10005797m.g Citrus clementina HOM05D005662 ORTHO05D007004 2.0e-48 196.8 265 42.6
TAR374G0299 Trochodendron aralioides HOM05D005662 ORTHO05D007004 2.7e-48 196.4 269 45.4
GSVIVG01018540001 Vitis vinifera HOM05D005662 ORTHO05D007004 2.7e-48 196.4 267 43.8
Dinv22971 Davidia involucrata HOM05D005662 ORTHO05D007004 4.5e-48 195.7 265 43.4
MD01G1184800 Malus domestica HOM05D005662 ORTHO05D007004 4.5e-48 195.7 266 44.0
Manes.06G137000 Manihot esculenta HOM05D005662 ORTHO05D007004 4.5e-48 195.7 269 44.6
Actinidia25029 Actinidia chinensis HOM05D005662 ORTHO05D007004 5.9e-48 195.3 258 45.0
Gohir.A07G204500 Gossypium hirsutum HOM05D005662 ORTHO05D007004 5.9e-48 195.3 267 47.2
Dinv28543 Davidia involucrata HOM05D005662 ORTHO05D007004 7.8e-48 194.9 269 44.2
SGA_v2.0_scaffold2G01165 Striga asiatica HOM05D005662 ORTHO05D007004 7.8e-48 194.9 271 43.9
Eucgr.K00149 Eucalyptus grandis HOM05D005662 ORTHO05D007004 1.0e-47 194.5 270 44.1
Potri.015G129900 Populus trichocarpa HOM05D005662 ORTHO05D007004 1.3e-47 194.1 268 43.7
SalBow4G2223 Salvia bowleyana HOM05D005662 ORTHO05D007004 2.9e-47 193.0 268 44.8
SalBow4G3324 Salvia bowleyana HOM05D005662 ORTHO05D007004 2.9e-47 193.0 268 44.8
Aqoxy7G00656 Aquilegia oxysepala HOM05D005662 ORTHO05D007004 5.0e-47 192.2 280 41.1
Ca_30761_v3 Cicer arietinum L. HOM05D005662 ORTHO05D007004 5.0e-47 192.2 269 43.9
Sopen03g023350 Solanum pennellii HOM05D005662 ORTHO05D007004 5.0e-47 192.2 249 43.8
PSO478G4436 Papaver somniferum HOM05D005662 ORTHO05D007004 1.5e-46 190.7 262 43.9
PSO782G3258 Papaver somniferum HOM05D005662 ORTHO05D007004 1.5e-46 190.7 261 43.7
Solyc03g083540.3 Solanum lycopersicum HOM05D005662 ORTHO05D007004 1.5e-46 190.7 249 43.4
RcHm_v2.0_Chr1g0374961 Rosa chinensis HOM05D005662 ORTHO05D007004 1.9e-46 190.3 264 44.3
ECA232G3412 Erigeron canadensis HOM05D005662 ORTHO05D007004 3.3e-46 189.5 261 40.2
ATR0733G084 Amborella trichopoda HOM05D005662 ORTHO05D007004 4.3e-46 189.1 266 41.0
Migut.F00442 Erythranthe guttata HOM05D005662 ORTHO05D007004 4.3e-46 189.1 266 43.6
FvH4_7g28050 Fragaria vesca HOM05D005662 ORTHO05D007004 5.6e-46 188.7 267 43.4
CANSAT56G2670 Cannabis sativa HOM05D005662 ORTHO05D007004 7.3e-46 188.3 269 41.3
CSS0015308 Camellia sinensis var. sinensis HOM05D005662 ORTHO05D007004 9.5e-46 188.0 266 41.0
SGA_v2.0_scaffold486G52387 Striga asiatica HOM05D005662 ORTHO05D007004 9.5e-46 188.0 267 41.9
THA.LOC104821401 Tarenaya hassleriana HOM05D005662 ORTHO05D007004 9.5e-46 188.0 268 45.5
HanXRQChr16g0512531 Helianthus annuus HOM05D005662 ORTHO05D007004 2.8e-45 186.4 264 40.9
Medtr4g033850 Medicago truncatula HOM05D005662 ORTHO05D007004 3.6e-45 186.0 264 43.9
Sabra12G0096500 Salix brachista HOM05D005662 ORTHO05D007004 3.6e-45 186.0 245 44.1
Thecc.03G160400 Theobroma cacao HOM05D005662 ORTHO05D007004 8.0e-45 184.9 265 44.9
PGSC0003DMG400023012 Solanum tuberosum HOM05D005662 ORTHO05D007004 1.0e-44 184.5 249 43.8
PGR142G0586 Punica granatum HOM05D005662 ORTHO05D007004 2.3e-44 183.3 270 40.7
Thhalv10004861m.g Eutrema salsugineum HOM05D005662 ORTHO05D007004 4.0e-44 182.6 267 43.4
Duzib205G1232 Durio zibethinus HOM05D005662 ORTHO05D007004 5.2e-44 182.2 259 43.2
Nitab4.5_0000072g0480 Nicotiana tabacum HOM05D005662 ORTHO05D007004 5.2e-44 182.2 263 40.7
Actinidia13561 Actinidia chinensis HOM05D005662 ORTHO05D007004 6.8e-44 181.8 263 41.8
BraA02t09152Z Brassica rapa HOM05D005662 ORTHO05D007004 6.8e-44 181.8 266 44.4
Phvul.011G004300 Phaseolus vulgaris HOM05D005662 ORTHO05D007004 6.8e-44 181.8 256 44.1
Sp2g25490 Schrenkiella parvula HOM05D005662 ORTHO05D007004 8.9e-44 181.4 242 45.9
Duzib084G0609 Durio zibethinus HOM05D005662 ORTHO05D007004 1.5e-43 180.6 265 43.4
C02p62090 Brassica napus HOM05D005662 ORTHO05D007004 2.0e-43 180.3 267 42.3
Glyma.09G233200 Glycine max HOM05D005662 ORTHO05D007004 2.0e-43 180.3 254 41.3
Lalb_Chr04g0260971 Lupinus albus HOM05D005662 ORTHO05D007004 2.0e-43 180.3 264 42.0
Peaxi162Scf01372g00048 Petunia axillaris HOM05D005662 ORTHO05D007004 2.0e-43 180.3 262 40.5
Glyma.14G044000 Glycine max HOM05D005662 ORTHO05D007004 2.6e-43 179.9 256 42.6
BolC3t18716H Brassica oleracea HOM05D005662 ORTHO05D007004 3.4e-43 179.5 269 42.4
DCAR_015743 Daucus carota HOM05D005662 ORTHO05D007004 3.4e-43 179.5 262 42.4
VMungo1127G2067 Vigna mungo HOM05D005662 ORTHO05D007004 4.4e-43 179.1 257 44.0
AL8G39110 Arabidopsis lyrata HOM05D005662 ORTHO05D007004 7.5e-43 178.3 269 44.2
A02p42240 Brassica napus HOM05D005662 ORTHO05D007004 9.8e-43 177.9 266 42.5
Oeu039209.1 Olea europaea HOM05D005662 ORTHO05D007004 1.3e-42 177.6 245 41.6
unitig_37.g12504 Utricularia gibba HOM05D005662 ORTHO05D007004 1.3e-42 177.6 242 41.3
AT5G62290 Arabidopsis thaliana HOM05D005662 ORTHO05D007004 1.7e-42 177.2 267 43.4
Nitab4.5_0000481g0050 Nicotiana tabacum HOM05D005662 ORTHO05D007004 1.7e-42 177.2 263 40.3
vmacro06774 Vaccinium macrocarpon HOM05D005662 ORTHO05D007004 1.7e-42 177.2 272 42.3
TPR.G15119 Trifolium pratense HOM05D005662 ORTHO05D007004 2.9e-42 176.4 250 42.4
Carub.0008s2298 Capsella rubella HOM05D005662 ORTHO05D007004 3.7e-42 176.0 268 43.7
arahy.Tifrunner.gnm1.ann1.TMT042 Arachis hypogaea HOM05D005662 ORTHO05D007004 1.1e-41 174.5 263 41.4
BcaB07g29785 Brassica carinata HOM05D005662 ORTHO05D007004 1.4e-41 174.1 269 41.3
arahy.Tifrunner.gnm1.ann1.93Q1AU Arachis hypogaea HOM05D005662 ORTHO05D007004 1.9e-41 173.7 263 41.8
BraA06t25849Z Brassica rapa HOM05D005662 ORTHO05D007004 1.9e-41 173.7 255 43.1
CARHR276070 Cardamine hirsuta HOM05D005662 ORTHO05D007004 1.9e-41 173.7 272 43.0
Psat7g191960 Pisum sativum HOM05D005662 ORTHO05D007004 1.9e-41 173.7 268 42.2
Aa31LG11G1300 Aethionema arabicum HOM05D005662 ORTHO05D007004 5.4e-41 172.2 263 43.7
arahy.Tifrunner.gnm1.ann1.QSR7PX Arachis hypogaea HOM05D005662 ORTHO05D007004 4.6e-40 169.1 263 41.1
Sed0027239 Sechium edule HOM05D005662 ORTHO05D007004 2.3e-39 166.8 272 40.1
arahy.Tifrunner.gnm1.ann1.LZP622 Arachis hypogaea HOM05D005662 ORTHO05D007004 5.0e-39 165.6 260 40.8
EL10Ac3g05805 Beta vulgaris HOM05D005662 ORTHO05D007004 6.6e-39 165.2 274 38.3
Lj3g0023650 Lotus japonicus HOM05D005662 ORTHO05D007004 1.1e-38 164.5 256 40.6
MELO3C005412.2 Cucumis melo HOM05D005662 ORTHO05D007004 1.9e-38 163.7 271 38.7
Lalb_Chr15g0077021 Lupinus albus HOM05D005662 ORTHO05D007004 2.5e-38 163.3 253 40.3
Hund04625 Selenicereus undatus HOM05D005662 ORTHO05D007004 1.6e-37 160.6 244 39.3
SEGI_33447 Sequoiadendron giganteum HOM05D005662 ORTHO05D007004 4.7e-37 159.1 253 39.5
Ca_00244_v3 Cicer arietinum L. HOM05D005662 ORTHO05D007004 6.2e-37 158.7 214 44.4
C03p64570 Brassica napus HOM05D000207 ORTHO05D001482 1.8e-36 157.1 236 41.1
A06p29040 Brassica napus HOM05D000207 ORTHO05D001482 7.5e-35 151.8 221 42.1
SMO351G0592 Selaginella moellendorffii HOM05D005662 ORTHO05D007004 9.8e-35 151.4 258 37.2
Pp3c16_14910 Physcomitrium patens HOM05D005662 ORTHO05D007004 3.2e-33 146.4 238 38.2
Sed0014362 Sechium edule HOM05D005662 ORTHO05D007004 1.0e-31 141.4 262 37.0
ClCG01G005160 Citrullus lanatus HOM05D005662 ORTHO05D007004 3.0e-31 139.8 309 32.7
Mapoly0005s0155 Marchantia polymorpha HOM05D005662 ORTHO05D007004 1.5e-30 137.5 263 36.1
Rhsim03G0170700 Rhododendron simsii HOM05D005662 ORTHO05D007004 1.9e-30 137.1 290 36.9
Sc13g0007790 Simmondsia chinensis HOM05D005662 ORTHO05D007004 9.5e-30 134.8 163 46.6
Haze_13835 Corylus avellana HOM05D005662 ORTHO05D007004 3.6e-29 132.9 264 35.2
Pp3c5_5760 Physcomitrium patens HOM05D005662 ORTHO05D007004 3.6e-29 132.9 271 35.8
CBR_g40194 Chara braunii HOM05D005662 ORTHO05D007004 4.7e-29 132.5 272 33.5
PSO063G7367 Papaver somniferum HOM05D005662 ORTHO05D007004 8.1e-29 131.7 143 47.6
Atru.chr1.654 Acer truncatum HOM05D005662 ORTHO05D007004 3.4e-27 126.3 204 42.2
Cfa008223 Carpinus fangiana HOM05D000922 ORTHO05D007004 2.9e-26 123.2 193 37.8
AagrBONN_evm.TU.Sc2ySwM_368.1564 Anthoceros agrestis HOM05D005662 ORTHO05D007004 1.6e-24 117.5 144 47.9
Cpa.g.sc130.1 Carica papaya HOM05D005662 ORTHO05D007004 4.6e-24 115.9 93 55.9
Sabra15G0143400 Salix brachista HOM05D005662 ORTHO05D007004 1.0e-23 114.8 114 50.0
Ah.13g067320 Amaranthus hybridus HOM05D005662 ORTHO05D007004 1.1e-22 111.3 95 54.7
Lsat_1_v5_gn_9_52481 Lactuca sativa HOM05D005662 ORTHO05D007004 1.8e-20 104.0 99 51.5
AUR62016115 Chenopodium quinoa HOM05D005662 ORTHO05D007004 2.4e-17 93.6 265 28.7
COL.COLO4_29300 Corchorus olitorius HOM05D005662 ORTHO05D007004 1.5e-14 84.3 108 39.8
Cre12.g538150 Chlamydomonas reinhardtii HOM05D005662 ORTHO05D007004 2.5e-14 83.6 239 31.0
PRCOL_00002770 Prasinoderma coloniale HOM05D005662 ORTHO05D007004 9.6e-14 81.6 187 35.8
CAN.G152.22 Capsicum annuum HOM05D005662 ORTHO05D007004 6.2e-13 79.0 168 34.5
Ah.13g067330 Amaranthus hybridus HOM05D005662 ORTHO05D007004 1.3e-10 71.2 99 43.4
MCO15G129 Micromonas commoda HOM05D005662 ORTHO05D007004 8.4e-10 68.6 182 28.6
BcaC03g18141 Brassica carinata HOM05D000207 ORTHO05D001482 9.3e-09 65.1 140 35.7
Thecc.03G160100 Theobroma cacao HOM05D005662 ORTHO05D007004 4.6e-08 62.8 133 37.6
DCAR_018618 Daucus carota HOM05D005662 ORTHO05D007004 6.0e-08 62.4 171 31.6


User provided reference genes

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