Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb010600 Zea mays HOM05D004961 ORTHO05D006258 4.2e-125 451.4 242 100.0
Zm00001eb398630 Zea mays HOM05D004961 ORTHO05D006258 3.7e-105 385.2 225 91.1
Os03g0247100 Oryza sativa ssp. japonica HOM05D004961 ORTHO05D006258 5.1e-86 321.6 226 74.3
HPP92_025672 Vanilla planifolia HOM05D004961 ORTHO05D006258 1.0e-49 201.1 181 58.6
CSS0035955 Camellia sinensis var. sinensis HOM05D004961 ORTHO05D006258 2.0e-45 186.8 162 57.4
Dinv43717 Davidia involucrata HOM05D004961 ORTHO05D006258 1.1e-43 181.0 175 54.3
TAR629G2710 Trochodendron aralioides HOM05D004961 ORTHO05D006258 1.8e-43 180.3 182 53.8
GSVIVG01027619001 Vitis vinifera HOM05D004961 ORTHO05D006258 2.4e-43 179.9 152 58.6
FAN03G2819 Fragaria x ananassa HOM05D004961 ORTHO05D006258 9.1e-43 177.9 189 50.8
MBI12_g27776_MAGBIO Magnolia biondii HOM05D004961 ORTHO05D006258 1.2e-42 177.6 144 63.2
vmacro13395 Vaccinium macrocarpon HOM05D004961 ORTHO05D006258 1.5e-42 177.2 153 59.5
Rhsim07G0027200 Rhododendron simsii HOM05D004961 ORTHO05D006258 2.0e-42 176.8 150 60.0
FAN06G1099 Fragaria x ananassa HOM05D004961 ORTHO05D006258 2.6e-42 176.4 206 49.0
Gohir.A11G081100 Gossypium hirsutum HOM05D004961 ORTHO05D006258 2.6e-42 176.4 183 54.1
Gohir.D11G085600 Gossypium hirsutum HOM05D004961 ORTHO05D006258 2.6e-42 176.4 183 54.1
Gorai.007G091500 Gossypium raimondii HOM05D004961 ORTHO05D006258 2.6e-42 176.4 183 54.1
Manes.05G044700 Manihot esculenta HOM05D004961 ORTHO05D006258 2.6e-42 176.4 190 51.1
AT3G60850 Arabidopsis thaliana HOM05D004961 ORTHO05D006258 3.4e-42 176.0 194 51.0
Solyc01g091390.2 Solanum lycopersicum HOM05D004961 ORTHO05D006258 3.4e-42 176.0 141 61.0
FvH4_7g11970 Fragaria vesca HOM05D004961 ORTHO05D006258 4.5e-42 175.6 189 50.3
FAN10G1405 Fragaria x ananassa HOM05D004961 ORTHO05D006258 4.5e-42 175.6 189 50.3
SEGI_19190 Sequoiadendron giganteum HOM05D004961 ORTHO05D006258 5.9e-42 175.3 190 48.4
Nitab4.5_0005372g0040 Nicotiana tabacum HOM05D004961 ORTHO05D006258 7.7e-42 174.9 140 60.0
Sopen01g037160 Solanum pennellii HOM05D004961 ORTHO05D006258 7.7e-42 174.9 141 61.0
Cc02_g36640 Coffea canephora HOM05D004961 ORTHO05D006258 1.0e-41 174.5 152 56.6
Gohir.D08G042400 Gossypium hirsutum HOM05D004961 ORTHO05D006258 1.0e-41 174.5 153 56.9
Gorai.004G041000 Gossypium raimondii HOM05D004961 ORTHO05D006258 1.0e-41 174.5 153 56.9
MD02G1203100 Malus domestica HOM05D004961 ORTHO05D006258 1.0e-41 174.5 158 56.3
PGSC0003DMG400012758 Solanum tuberosum HOM05D004961 ORTHO05D006258 1.0e-41 174.5 141 60.3
THA.LOC104802441 Tarenaya hassleriana HOM05D004961 ORTHO05D006258 1.0e-41 174.5 159 55.3
AUR62004223 Chenopodium quinoa HOM05D004961 ORTHO05D006258 1.3e-41 174.1 167 53.3
MD07G1123000 Malus domestica HOM05D004961 ORTHO05D006258 1.3e-41 174.1 158 56.3
Nitab4.5_0000457g0390 Nicotiana tabacum HOM05D004961 ORTHO05D006258 1.3e-41 174.1 140 59.3
PSO478G4809 Papaver somniferum HOM05D004961 ORTHO05D006258 1.3e-41 174.1 154 57.8
PGR031G0429 Punica granatum HOM05D004961 ORTHO05D006258 1.7e-41 173.7 152 55.9
EL10Ac1g00903 Beta vulgaris HOM05D004961 ORTHO05D006258 2.2e-41 173.3 158 54.4
Ciclev10019247m.g Citrus clementina HOM05D004961 ORTHO05D006258 2.2e-41 173.3 184 49.5
MELO3C006184.2 Cucumis melo HOM05D004961 ORTHO05D006258 2.2e-41 173.3 151 56.3
CsaV3_3G009640 Cucumis sativus L. HOM05D004961 ORTHO05D006258 2.2e-41 173.3 151 56.3
SHI25769 Sapria himalayana HOM05D004961 ORTHO05D006258 2.2e-41 173.3 192 48.4
Thecc.01G375500 Theobroma cacao HOM05D004961 ORTHO05D006258 2.2e-41 173.3 152 57.9
FAN10G1351 Fragaria x ananassa HOM05D004961 ORTHO05D006258 2.9e-41 172.9 189 49.7
Hma1.2p1_0033F.1_g021010 Hydrangea macrophylla HOM05D004961 ORTHO05D006258 2.9e-41 172.9 171 50.9
Hma1.2p1_2294F.1_g319110 Hydrangea macrophylla HOM05D004961 ORTHO05D006258 2.9e-41 172.9 171 50.9
CSS0024555 Camellia sinensis var. sinensis HOM05D004961 ORTHO05D006258 3.8e-41 172.6 144 58.3
FAN06G1287 Fragaria x ananassa HOM05D004961 ORTHO05D006258 3.8e-41 172.6 189 49.7
CiPaw.01G261500 Carya illinoinensis HOM05D004961 ORTHO05D006258 5.0e-41 172.2 157 54.8
CiPaw.02G167000 Carya illinoinensis HOM05D004961 ORTHO05D006258 5.0e-41 172.2 152 55.3
COL.COLO4_12554 Corchorus olitorius HOM05D004961 ORTHO05D006258 5.0e-41 172.2 152 56.6
Nn4g26417 Nelumbo nucifera HOM05D004961 ORTHO05D006258 5.0e-41 172.2 151 56.3
BcaC07g40605 Brassica carinata HOM05D004961 ORTHO05D006258 6.5e-41 171.8 152 57.9
C08p35800 Brassica napus HOM05D004961 ORTHO05D006258 6.5e-41 171.8 152 57.9
BolC8t51170H Brassica oleracea HOM05D004961 ORTHO05D006258 6.5e-41 171.8 152 57.9
Duzib133G1444 Durio zibethinus HOM05D004961 ORTHO05D006258 6.5e-41 171.8 152 56.6
FAN01G0106 Fragaria x ananassa HOM05D004961 ORTHO05D006258 6.5e-41 171.8 189 48.7
Potri.014G070200 Populus trichocarpa HOM05D004961 ORTHO05D006258 6.5e-41 171.8 158 55.1
QL08p052244 Quercus lobata HOM05D004961 ORTHO05D006258 6.5e-41 171.8 152 56.6
Sp5g02400 Schrenkiella parvula HOM05D004961 ORTHO05D006258 6.5e-41 171.8 152 57.2
Actinidia12261 Actinidia chinensis HOM05D004961 ORTHO05D006258 8.5e-41 171.4 145 59.3
Sed0003746 Sechium edule HOM05D004961 ORTHO05D006258 8.5e-41 171.4 151 57.0
BcaC07g42645 Brassica carinata HOM05D004961 ORTHO05D006258 1.1e-40 171.0 152 57.9
A09p53100 Brassica napus HOM05D004961 ORTHO05D006258 1.1e-40 171.0 152 57.9
BraA09t40736Z Brassica rapa HOM05D004961 ORTHO05D006258 1.1e-40 171.0 152 57.9
Lalb_Chr13g0291711 Lupinus albus HOM05D004961 ORTHO05D006258 1.1e-40 171.0 153 55.6
Aqoxy7G00605 Aquilegia oxysepala HOM05D004961 ORTHO05D006258 1.4e-40 170.6 144 59.0
Gohir.A08G031300 Gossypium hirsutum HOM05D004961 ORTHO05D006258 1.4e-40 170.6 153 55.6
Prupe.2G146400 Prunus persica HOM05D004961 ORTHO05D006258 1.4e-40 170.6 158 53.8
Lalb_Chr07g0189751 Lupinus albus HOM05D004961 ORTHO05D006258 1.9e-40 170.2 160 53.1
RcHm_v2.0_Chr1g0350691 Rosa chinensis HOM05D004961 ORTHO05D006258 1.9e-40 170.2 151 55.6
TWI14G0737 Tripterygium wilfordii HOM05D004961 ORTHO05D006258 1.9e-40 170.2 159 55.3
Thhalv10005830m.g Eutrema salsugineum HOM05D004961 ORTHO05D006258 2.5e-40 169.9 152 57.2
Sabra14G0049800 Salix brachista HOM05D004961 ORTHO05D006258 2.5e-40 169.9 158 54.4
Sed0025415 Sechium edule HOM05D004961 ORTHO05D006258 2.5e-40 169.9 151 55.6
Aa31LG10G15080 Aethionema arabicum HOM05D004961 ORTHO05D006258 4.2e-40 169.1 152 55.9
AL5G43170 Arabidopsis lyrata HOM05D004961 ORTHO05D006258 4.2e-40 169.1 192 49.5
TWI59G0003 Tripterygium wilfordii HOM05D004961 ORTHO05D006258 4.2e-40 169.1 159 54.1
TAR375G0417 Trochodendron aralioides HOM05D004961 ORTHO05D006258 4.2e-40 169.1 144 57.6
CANSAT56G2246 Cannabis sativa HOM05D004961 ORTHO05D006258 5.5e-40 168.7 152 55.9
HanXRQChr03g0093851 Helianthus annuus HOM05D004961 ORTHO05D006258 5.5e-40 168.7 140 61.4
CDE11G0257 Ceratophyllum demersum HOM05D004961 ORTHO05D006258 7.2e-40 168.3 189 50.3
Haze_16810 Corylus avellana HOM05D004961 ORTHO05D006258 7.2e-40 168.3 152 53.9
CAN.G388.8 Capsicum annuum HOM05D004961 ORTHO05D006258 9.4e-40 167.9 141 58.2
unitig_22.g6802 Utricularia gibba HOM05D004961 ORTHO05D006258 9.4e-40 167.9 184 49.5
BraA07t30166Z Brassica rapa HOM05D004961 ORTHO05D006258 1.6e-39 167.2 150 58.0
Cfa001712 Carpinus fangiana HOM05D004961 ORTHO05D006258 1.6e-39 167.2 152 55.3
ECA236G4958 Erigeron canadensis HOM05D004961 ORTHO05D006258 1.6e-39 167.2 161 53.4
Atru.chr5.317 Acer truncatum HOM05D004961 ORTHO05D006258 2.1e-39 166.8 176 51.1
PSO782G4206 Papaver somniferum HOM05D004961 ORTHO05D006258 2.7e-39 166.4 154 57.1
Carub.0005s2761 Capsella rubella HOM05D004961 ORTHO05D006258 3.6e-39 166.0 152 55.3
Medtr8g036115 Medicago truncatula HOM05D004961 ORTHO05D006258 3.6e-39 166.0 151 55.6
Oeu005782.1 Olea europaea HOM05D004961 ORTHO05D006258 3.6e-39 166.0 193 48.2
TPR.G21740 Trifolium pratense HOM05D004961 ORTHO05D006258 3.6e-39 166.0 151 57.0
Peaxi162Scf00021g01613 Petunia axillaris HOM05D004961 ORTHO05D006258 4.7e-39 165.6 140 58.6
HanXRQChr09g0245711 Helianthus annuus HOM05D004961 ORTHO05D006258 6.1e-39 165.2 190 48.9
SalBow5G3969 Salvia bowleyana HOM05D004961 ORTHO05D006258 6.1e-39 165.2 158 53.2
SalBow5G5559 Salvia bowleyana HOM05D004961 ORTHO05D006258 6.1e-39 165.2 158 53.2
Ca_23848_v3 Cicer arietinum L. HOM05D004961 ORTHO05D006258 1.0e-38 164.5 151 55.0
Migut.N01639 Erythranthe guttata HOM05D004961 ORTHO05D006258 1.4e-38 164.1 158 53.8
Lsat_1_v5_gn_7_7241 Lactuca sativa HOM05D004961 ORTHO05D006258 1.4e-38 164.1 152 54.6
Lj3g0023798 Lotus japonicus HOM05D004961 ORTHO05D006258 1.4e-38 164.1 151 56.3
CARHR171240 Cardamine hirsuta HOM05D004961 ORTHO05D006258 1.8e-38 163.7 152 55.3
Oeu003482.1 Olea europaea HOM05D004961 ORTHO05D006258 1.8e-38 163.7 213 45.1
Phvul.010G084800 Phaseolus vulgaris HOM05D004961 ORTHO05D006258 1.8e-38 163.7 152 56.6
SMO164G0066 Selaginella moellendorffii HOM05D004961 ORTHO05D006258 1.8e-38 163.7 151 54.3
Sc26g0001210 Simmondsia chinensis HOM05D004961 ORTHO05D006258 2.3e-38 163.3 155 52.3
Oeu037913.2 Olea europaea HOM05D004961 ORTHO05D006258 3.0e-38 162.9 189 48.1
VMungo0331G0268 Vigna mungo HOM05D004961 ORTHO05D006258 3.0e-38 162.9 152 55.9
DCAR_025114 Daucus carota HOM05D004961 ORTHO05D006258 3.9e-38 162.5 177 49.7
BcaC08g45088 Brassica carinata HOM05D004961 ORTHO05D006258 5.1e-38 162.2 151 57.0
C06p26950 Brassica napus HOM05D004961 ORTHO05D006258 5.1e-38 162.2 151 57.0
BolC6t37869H Brassica oleracea HOM05D004961 ORTHO05D006258 5.1e-38 162.2 151 57.0
SMO358G0144 Selaginella moellendorffii HOM05D004961 ORTHO05D006258 5.1e-38 162.2 166 50.6
SGA_v2.0_scaffold11G05589 Striga asiatica HOM05D004961 ORTHO05D006258 6.7e-38 161.8 158 51.3
Migut.B01640 Erythranthe guttata HOM05D004961 ORTHO05D006258 8.8e-38 161.4 197 46.7
ATR0810G227 Amborella trichopoda HOM05D004961 ORTHO05D006258 2.0e-37 160.2 144 55.6
A07p25240 Brassica napus HOM05D004961 ORTHO05D006258 2.0e-37 160.2 155 56.1
arahy.Tifrunner.gnm1.ann1.0VBM10 Arachis hypogaea HOM05D004961 ORTHO05D006258 5.7e-37 158.7 151 53.0
arahy.Tifrunner.gnm1.ann1.T4E2VP Arachis hypogaea HOM05D004961 ORTHO05D006258 5.7e-37 158.7 161 52.2
Glyma.01G143700 Glycine max HOM05D004961 ORTHO05D006258 7.4e-37 158.3 152 55.3
Glyma.03G023401 Glycine max HOM05D004961 ORTHO05D006258 7.4e-37 158.3 152 54.6
Ah.05g174990 Amaranthus hybridus HOM05D004961 ORTHO05D006258 1.3e-36 157.5 140 55.0
ATR0582G166 Amborella trichopoda HOM05D004961 ORTHO05D006258 5.3e-35 152.1 150 51.3
Lj9P570T30 Lonicera japonica HOM05D004961 ORTHO05D006258 2.6e-34 149.8 130 58.5
Nn4g26286 Nelumbo nucifera HOM05D004961 ORTHO05D006258 3.5e-34 149.4 139 55.4
ECA234G3702 Erigeron canadensis HOM05D004961 ORTHO05D006258 8.5e-33 144.8 232 41.8
Psat4g195520 Pisum sativum HOM05D004961 ORTHO05D006258 5.5e-32 142.1 143 53.1
AUR62013625 Chenopodium quinoa HOM05D004961 ORTHO05D006258 1.8e-30 137.1 127 55.9
CDE02G2832 Ceratophyllum demersum HOM05D004961 ORTHO05D006258 4.1e-27 125.9 155 47.1
HanXRQChr06g0169541 Helianthus annuus HOM05D004961 ORTHO05D006258 7.0e-27 125.2 133 48.9
SGA_v2.0_scaffold43G16471 Striga asiatica HOM05D004961 ORTHO05D006258 3.8e-25 119.4 148 43.2
HanXRQChr16g0519241 Helianthus annuus HOM05D004961 ORTHO05D006258 1.6e-23 114.0 156 41.7
Cpa.g.sc18.116 Carica papaya HOM05D004961 ORTHO05D006258 3.7e-20 102.8 89 58.4
BcaC07g40606 Brassica carinata HOM05D003135 ORTHO05D003715 1.1e-11 74.7 77 51.9
BcaNung07135 Brassica carinata HOM05D004961 ORTHO05D006258 9.2e-11 71.6 43 76.7
AagrBONN_evm.TU.Sc2ySwM_344.1101 Anthoceros agrestis HOM05D004961 ORTHO05D006258 1.0e-09 68.2 162 30.2
MELO3C015747.2 Cucumis melo HOM05D004961 ORTHO05D044953 3.8e-09 66.2 59 52.5


User provided reference genes

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