Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb010100 Zea mays HOM05D007520 ORTHO05D009417 2.3e-131 472.2 235 100.0
Nn4g24547 Nelumbo nucifera HOM05D007520 ORTHO05D009417 1.0e-62 244.2 207 55.6
COL.COLO4_27582 Corchorus olitorius HOM05D007520 ORTHO05D009417 1.1e-58 230.7 204 52.9
Aqoxy5G01264 Aquilegia oxysepala HOM05D007520 ORTHO05D009417 4.3e-58 228.8 224 47.8
Duzib268G1867 Durio zibethinus HOM05D007520 ORTHO05D009417 5.7e-58 228.4 203 49.8
Ciclev10016556m.g Citrus clementina HOM05D007520 ORTHO05D009417 9.7e-58 227.6 203 54.2
TWI53G0076 Tripterygium wilfordii HOM05D007520 ORTHO05D009417 1.8e-56 223.4 206 51.9
TAR374G0082 Trochodendron aralioides HOM05D000504 ORTHO05D000403 2.4e-56 223.0 207 53.6
Manes.17G089333 Manihot esculenta HOM05D007520 ORTHO05D009417 5.3e-56 221.9 208 52.9
Actinidia11793 Actinidia chinensis HOM05D007520 ORTHO05D009417 2.0e-55 219.9 212 50.5
Hma1.2p1_0095F.1_g047520 Hydrangea macrophylla HOM05D007520 ORTHO05D009417 2.6e-55 219.5 203 53.2
MELO3C020056.2 Cucumis melo HOM05D007520 ORTHO05D009417 4.5e-55 218.8 203 49.8
Gorai.008G169800 Gossypium raimondii HOM05D007520 ORTHO05D009417 5.9e-55 218.4 203 50.2
PGR042G3173 Punica granatum HOM05D007520 ORTHO05D009417 2.2e-54 216.5 205 51.2
Sed0012329 Sechium edule HOM05D007520 ORTHO05D009417 3.8e-54 215.7 203 49.3
QL03p039135 Quercus lobata HOM05D007520 ORTHO05D009417 2.5e-53 213.0 213 49.3
Prupe.1G338000 Prunus persica HOM05D007520 ORTHO05D009417 5.5e-53 211.8 214 48.1
Lj2g0009613 Lotus japonicus HOM05D007520 ORTHO05D009417 1.2e-52 210.7 207 48.3
ECA246G0416 Erigeron canadensis HOM05D007520 ORTHO05D009417 2.7e-52 209.5 207 51.2
CsaV3_5G012990 Cucumis sativus L. HOM05D007520 ORTHO05D009417 3.6e-52 209.1 203 47.3
CANSAT78G2519 Cannabis sativa HOM05D007520 ORTHO05D009417 4.7e-52 208.8 200 51.0
TPR.G35527 Trifolium pratense HOM05D007520 ORTHO05D009417 4.7e-52 208.8 207 48.3
THA.LOC104824117 Tarenaya hassleriana HOM05D007520 ORTHO05D009417 7.9e-52 208.0 206 46.6
Thhalv10005705m.g Eutrema salsugineum HOM05D007520 ORTHO05D009417 1.4e-51 207.2 203 48.8
BolC7t43791H Brassica oleracea HOM05D007520 ORTHO05D009417 3.0e-51 206.1 203 47.8
Sp2g13330 Schrenkiella parvula HOM05D007520 ORTHO05D009417 5.1e-51 205.3 203 48.3
PSO478G1043 Papaver somniferum HOM05D007520 ORTHO05D009417 6.7e-51 204.9 211 47.4
AT2G01905 Arabidopsis thaliana HOM05D007520 ORTHO05D009417 8.8e-51 204.5 203 49.8
PSO017G5472 Papaver somniferum HOM05D007520 ORTHO05D009417 8.8e-51 204.5 206 47.6
CARHR144480 Cardamine hirsuta HOM05D007520 ORTHO05D009417 2.0e-50 203.4 203 48.3
Psat6g100600 Pisum sativum HOM05D007520 ORTHO05D009417 3.3e-50 202.6 207 47.3
Migut.L00619 Erythranthe guttata HOM05D007520 ORTHO05D009417 4.4e-50 202.2 203 45.3
BraA06t27270Z Brassica rapa HOM05D007520 ORTHO05D009417 7.4e-50 201.4 203 47.3
RcHm_v2.0_Chr4g0433681 Rosa chinensis HOM05D007520 ORTHO05D009417 2.8e-49 199.5 203 48.3
AL5G11020 Arabidopsis lyrata HOM05D007520 ORTHO05D009417 3.7e-49 199.1 213 46.0
MD13G1015700 Malus domestica HOM05D007520 ORTHO05D009417 3.7e-49 199.1 203 48.3
Medtr1g038820 Medicago truncatula HOM05D007520 ORTHO05D009417 4.8e-49 198.7 211 46.9
arahy.Tifrunner.gnm1.ann1.RL07R4 Arachis hypogaea HOM05D007520 ORTHO05D009417 1.8e-48 196.8 211 46.4
HanXRQChr12g0379401 Helianthus annuus HOM05D007520 ORTHO05D009417 2.4e-48 196.4 190 51.6
BcaC06g31264 Brassica carinata HOM05D007520 ORTHO05D009417 5.3e-48 195.3 214 44.4
FvH4_4g26110 Fragaria vesca HOM05D007520 ORTHO05D009417 7.0e-48 194.9 211 47.9
Solyc04g078500.1 Solanum lycopersicum HOM05D007520 ORTHO05D009417 1.2e-47 194.1 201 50.7
C07p32740 Brassica napus HOM05D007520 ORTHO05D009417 2.6e-47 193.0 203 45.3
Atru.chr11.1007 Acer truncatum HOM05D007520 ORTHO05D009417 3.5e-47 192.6 182 50.0
Aa31LG2G8010 Aethionema arabicum HOM05D007520 ORTHO05D009417 3.5e-47 192.6 231 43.7
Sopen04g032100 Solanum pennellii HOM05D007520 ORTHO05D009417 4.5e-47 192.2 207 49.3
Phvul.003G001900 Phaseolus vulgaris HOM05D007520 ORTHO05D009417 1.0e-46 191.0 200 44.5
PGSC0003DMG400041336 Solanum tuberosum HOM05D001905 ORTHO05D001820 2.9e-46 189.5 207 49.3
A06p43940 Brassica napus HOM05D007520 ORTHO05D009417 3.8e-46 189.1 203 44.8
CiPaw.06G058600 Carya illinoinensis HOM05D007520 ORTHO05D009417 6.5e-46 188.3 203 47.8
VMungo0251G1805 Vigna mungo HOM05D007520 ORTHO05D009417 6.5e-46 188.3 205 45.4
SGA_v2.0_scaffold172G39028 Striga asiatica HOM05D007520 ORTHO05D009417 1.1e-45 187.6 215 45.6
Sc15g0004470 Simmondsia chinensis HOM05D007520 ORTHO05D009417 5.5e-45 185.3 207 44.9
CAN.G1812.4 Capsicum annuum HOM05D007520 ORTHO05D009417 1.6e-44 183.7 201 48.8
Nitab4.5_0004339g0060 Nicotiana tabacum HOM05D007520 ORTHO05D009417 3.6e-44 182.6 205 46.8
Thecc.02G303900 Theobroma cacao HOM05D007520 ORTHO05D009417 4.7e-44 182.2 144 56.2
Nitab4.5_0010118g0020 Nicotiana tabacum HOM05D007520 ORTHO05D009417 4.0e-43 179.1 205 45.9
Lalb_Chr10g0094861 Lupinus albus HOM05D007520 ORTHO05D009417 8.2e-41 171.4 188 44.1
Lsat_1_v5_gn_5_170921 Lactuca sativa HOM05D007520 ORTHO05D009417 4.1e-40 169.1 207 42.5
EL10Ac1g01972 Beta vulgaris HOM05D007520 ORTHO05D009417 1.2e-39 167.5 210 41.4
Ah.11g041100 Amaranthus hybridus HOM05D007520 ORTHO05D009417 7.7e-39 164.9 219 39.3
FAN12G3032 Fragaria x ananassa HOM05D007520 ORTHO05D009417 1.0e-38 164.5 157 50.3
FAN12G3090 Fragaria x ananassa HOM05D007520 ORTHO05D009417 1.0e-38 164.5 157 50.3
FAN17G2852 Fragaria x ananassa HOM05D007520 ORTHO05D009417 1.1e-37 161.0 171 45.6
Atru.BG.295.p Acer truncatum HOM05D007520 ORTHO05D009417 1.9e-37 160.2 130 54.6
Glyma.14G224300 Glycine max HOM05D007520 ORTHO05D009417 9.1e-32 141.4 128 48.4
FAN22G1570 Fragaria x ananassa HOM05D000296 ORTHO05D000175 2.7e-31 139.8 147 44.9
Dinv08902 Davidia involucrata HOM05D007520 ORTHO05D009417 6.5e-30 135.2 149 47.7
AUR62036879 Chenopodium quinoa HOM05D007520 ORTHO05D009417 1.5e-29 134.0 141 44.7
Rhsim09G0085600 Rhododendron simsii HOM05D007520 ORTHO05D009417 6.1e-28 128.6 156 41.0
Gohir.A12G153900 Gossypium hirsutum HOM05D007520 ORTHO05D009417 1.8e-27 127.1 203 35.5
GSVIVG01011596001 Vitis vinifera HOM05D007520 ORTHO05D009417 4.0e-27 125.9 117 52.1
SalBow4G2630 Salvia bowleyana HOM05D007520 ORTHO05D009417 6.8e-27 125.2 118 44.1
Gohir.D12G157000 Gossypium hirsutum HOM05D007520 ORTHO05D009417 2.0e-26 123.6 203 35.0
SalBow3G0394 Salvia bowleyana HOM05D007520 ORTHO05D009417 2.6e-26 123.2 116 44.8
ClCG11G001000 Citrullus lanatus HOM05D007520 ORTHO05D009417 3.4e-26 122.9 171 38.6
DCAR_002655 Daucus carota HOM05D007520 ORTHO05D009417 3.4e-26 122.9 131 46.6
MSTRG.8107 Avicennia marina HOM05D007520 ORTHO05D009417 7.5e-26 121.7 118 50.8
Cc11_g05730 Coffea canephora HOM05D007520 ORTHO05D009417 2.8e-25 119.8 114 50.9
HPP92_016407 Vanilla planifolia HOM05D007520 ORTHO05D009417 2.4e-24 116.7 92 58.7
GSVIVG01011595001 Vitis vinifera HOM05D007520 ORTHO05D009417 2.4e-24 116.7 88 56.8
CSS0024703 Camellia sinensis var. sinensis HOM05D007520 ORTHO05D009417 3.1e-24 116.3 136 41.2
Carub.0005s0089 Capsella rubella HOM05D007520 ORTHO05D009417 4.1e-24 115.9 124 46.8
Pp3c10_19450 Physcomitrium patens HOM05D007520 ORTHO05D009417 2.0e-23 113.6 194 34.5
Hma1.2p1_0095F.1_g047530 Hydrangea macrophylla HOM05D007520 ORTHO05D009417 4.5e-23 112.5 227 33.9
PGSC0003DMG400013121 Solanum tuberosum HOM05D007520 ORTHO05D009417 1.9e-21 107.1 119 46.2
SalBow6G7185 Salvia bowleyana HOM05D007520 ORTHO05D009417 4.3e-21 105.9 101 46.5
Mapoly0059s0009 Marchantia polymorpha HOM05D007520 ORTHO05D009417 7.3e-21 105.1 205 32.2
CSS0003025 Camellia sinensis var. sinensis HOM05D007520 ORTHO05D009417 9.5e-21 104.8 136 39.0
Carub.0005s0090 Capsella rubella HOM05D007520 ORTHO05D009417 3.0e-19 99.8 87 51.7
SalBow2G3493 Salvia bowleyana HOM05D007520 ORTHO05D009417 5.2e-19 99.0 90 48.9
CSS0021820 Camellia sinensis var. sinensis HOM05D007520 ORTHO05D009417 8.9e-19 98.2 94 50.0
CSS0032687 Camellia sinensis var. sinensis HOM05D007520 ORTHO05D009417 8.9e-19 98.2 94 50.0
Lj3A859T72 Lonicera japonica HOM05D007520 ORTHO05D009417 5.7e-18 95.5 131 38.9
HPP92_016406 Vanilla planifolia HOM05D007520 ORTHO05D009417 9.8e-18 94.7 69 62.3
CSS0008274 Camellia sinensis var. sinensis HOM05D007520 ORTHO05D009417 5.4e-16 89.0 66 54.5
CDE06G1244 Ceratophyllum demersum HOM05D007520 ORTHO05D009417 5.0e-14 82.4 70 55.7
Haze_10814 Corylus avellana HOM05D007520 ORTHO05D009417 7.3e-13 78.6 86 45.3
Dinv08901 Davidia involucrata HOM05D007520 ORTHO05D009417 9.8e-10 68.2 45 64.4
AUR62026615 Chenopodium quinoa HOM05D007520 ORTHO05D009417 2.4e-08 63.5 75 37.3
AUR62032185 Chenopodium quinoa HOM05D007520 ORTHO05D009417 2.7e-07 60.1 68 36.8
Eucgr.B02652 Eucalyptus grandis HOM05D007520 ORTHO05D009417 1.0e-06 58.2 48 54.2
AUR62033544 Chenopodium quinoa HOM05D000122 ORTHO05D009417 3.9e-06 56.2 74 32.4


User provided reference genes

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