Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb009480 Zea mays HOM05D003497 ORTHO05D003964 2.7e-272 941.4 481 100.0
Os03g0232000 Oryza sativa ssp. japonica HOM05D003497 ORTHO05D003964 1.7e-141 506.9 483 60.0
HPP92_007713 Vanilla planifolia HOM05D003497 ORTHO05D003964 2.9e-56 223.8 499 35.1
Eucgr.I02495 Eucalyptus grandis HOM05D003497 ORTHO05D003964 4.7e-51 206.5 521 34.5
Eucgr.G00280 Eucalyptus grandis HOM05D003497 ORTHO05D003964 1.2e-46 191.8 477 32.9
Prupe.8G150500 Prunus persica HOM05D003497 ORTHO05D003964 1.7e-45 188.0 509 31.6
CiPaw.06G163900 Carya illinoinensis HOM05D003497 ORTHO05D003964 3.0e-45 187.2 535 30.7
Nn3g19312 Nelumbo nucifera HOM05D003497 ORTHO05D003964 5.6e-44 183.0 514 30.9
Manes.07G056700 Manihot esculenta HOM05D003497 ORTHO05D003964 7.3e-44 182.6 556 31.8
MELO3C018024.2 Cucumis melo HOM05D003497 ORTHO05D003964 1.6e-43 181.4 506 32.8
TAR625G0452 Trochodendron aralioides HOM05D003497 ORTHO05D003964 2.1e-43 181.0 525 32.4
SGA_v2.0_scaffold225G43063 Striga asiatica HOM05D003497 ORTHO05D003964 4.7e-43 179.9 514 32.5
arahy.Tifrunner.gnm1.ann1.6MCD86 Arachis hypogaea HOM05D003497 ORTHO05D003964 3.1e-42 177.2 511 30.9
CsaV3_4G000070 Cucumis sativus L. HOM05D003497 ORTHO05D003964 2.0e-41 174.5 487 31.8
Nn6g34530 Nelumbo nucifera HOM05D003497 ORTHO05D003964 2.6e-41 174.1 519 30.4
RcHm_v2.0_Chr6g0248431 Rosa chinensis HOM05D003497 ORTHO05D003964 4.4e-41 173.3 521 32.6
Sed0023460 Sechium edule HOM05D003497 ORTHO05D003964 1.3e-40 171.8 492 31.7
Thecc.02G120200 Theobroma cacao HOM05D003497 ORTHO05D003964 4.9e-40 169.9 484 30.2
PSO017G1612 Papaver somniferum HOM05D003497 ORTHO05D003964 8.4e-40 169.1 543 29.1
vmacro22257 Vaccinium macrocarpon HOM05D003497 ORTHO05D003964 8.4e-40 169.1 561 30.3
CSS0043603 Camellia sinensis var. sinensis HOM05D003497 ORTHO05D003964 1.9e-39 167.9 452 31.2
FAN27G0942 Fragaria x ananassa HOM05D003497 ORTHO05D003964 1.9e-39 167.9 510 32.5
ClCG10G010030 Citrullus lanatus HOM05D003497 ORTHO05D003964 4.2e-39 166.8 496 31.5
Lj5g0015963 Lotus japonicus HOM05D003497 ORTHO05D003964 4.2e-39 166.8 500 30.6
Lalb_Chr06g0164971 Lupinus albus HOM05D003497 ORTHO05D003964 4.2e-39 166.8 463 30.9
Sc18g0007350 Simmondsia chinensis HOM05D003497 ORTHO05D003964 2.1e-38 164.5 507 29.4
GSVIVG01037051001 Vitis vinifera HOM05D003497 ORTHO05D003964 2.1e-38 164.5 523 28.1
TAR381G0023 Trochodendron aralioides HOM05D003497 ORTHO05D003964 2.3e-37 161.0 440 29.1
BolC7t42548H Brassica oleracea HOM05D003497 ORTHO05D003964 3.0e-37 160.6 494 30.6
BraA07t29128Z Brassica rapa HOM05D003497 ORTHO05D003964 5.1e-37 159.8 506 30.8
CANSAT25G1915 Cannabis sativa HOM05D003497 ORTHO05D003964 5.1e-37 159.8 519 29.9
COL.COLO4_32482 Corchorus olitorius HOM05D003497 ORTHO05D003964 5.1e-37 159.8 439 31.2
ATR0739G052 Amborella trichopoda HOM05D003497 ORTHO05D003964 6.6e-37 159.5 531 29.2
BcaC06g35052 Brassica carinata HOM05D003497 ORTHO05D003964 6.6e-37 159.5 494 30.4
Rhsim05G0093000 Rhododendron simsii HOM05D003497 ORTHO05D003964 8.7e-37 159.1 567 29.5
MSTRG.16671 Avicennia marina HOM05D003497 ORTHO05D003964 1.1e-36 158.7 521 30.1
FvH4_2g03310 Fragaria vesca HOM05D003497 ORTHO05D003964 2.5e-36 157.5 530 31.3
HanXRQChr16g0502181 Helianthus annuus HOM05D003497 ORTHO05D003964 3.3e-36 157.1 523 27.3
Potri.005G109700 Populus trichocarpa HOM05D003497 ORTHO05D003964 3.3e-36 157.1 572 27.8
Cfa004695 Carpinus fangiana HOM05D003497 ORTHO05D003964 4.3e-36 156.8 467 30.0
QL11p029247 Quercus lobata HOM05D003497 ORTHO05D003964 4.3e-36 156.8 521 28.2
Ca_11026_v3 Cicer arietinum L. HOM05D003497 ORTHO05D003964 5.6e-36 156.4 475 31.6
DCAR_021943 Daucus carota HOM05D003497 ORTHO05D003964 5.6e-36 156.4 456 30.7
Sabra05G0090000 Salix brachista HOM05D003497 ORTHO05D003964 5.6e-36 156.4 572 28.1
AUR62027025 Chenopodium quinoa HOM05D003497 ORTHO05D003964 7.3e-36 156.0 560 28.8
Oeu025307.1 Olea europaea HOM05D003497 ORTHO05D003964 7.3e-36 156.0 562 29.5
A07p13790 Brassica napus HOM05D003497 ORTHO05D003964 9.6e-36 155.6 503 29.4
Cc02_g20070 Coffea canephora HOM05D003497 ORTHO05D003964 9.6e-36 155.6 544 31.1
Gorai.013G052000 Gossypium raimondii HOM05D003497 ORTHO05D003964 9.6e-36 155.6 513 28.1
Glyma.10G255600 Glycine max HOM05D003497 ORTHO05D003964 1.6e-35 154.8 493 30.4
Ah.01g007110 Amaranthus hybridus HOM05D003497 ORTHO05D003964 2.1e-35 154.5 538 28.8
C07p20260 Brassica napus HOM05D003497 ORTHO05D003964 2.1e-35 154.5 500 30.2
TWI14G1256 Tripterygium wilfordii HOM05D003497 ORTHO05D003964 2.1e-35 154.5 462 28.8
Haze_10291 Corylus avellana HOM05D003497 ORTHO05D003964 2.8e-35 154.1 515 29.3
Gohir.D13G046300 Gossypium hirsutum HOM05D003497 ORTHO05D003964 3.6e-35 153.7 517 28.4
Nitab4.5_0000003g0710 Nicotiana tabacum HOM05D003497 ORTHO05D003964 3.6e-35 153.7 503 31.0
Migut.B00464 Erythranthe guttata HOM05D003497 ORTHO05D003964 4.8e-35 153.3 458 32.1
Eucgr.H03378 Eucalyptus grandis HOM05D003497 ORTHO05D003964 4.8e-35 153.3 422 30.3
FAN20G1538 Fragaria x ananassa HOM05D003497 ORTHO05D003964 4.8e-35 153.3 523 31.5
FAN20G2306 Fragaria x ananassa HOM05D003497 ORTHO05D003964 4.8e-35 153.3 523 31.5
THA.LOC104822142 Tarenaya hassleriana HOM05D003497 ORTHO05D003964 4.8e-35 153.3 541 29.2
Gohir.A13G047900 Gossypium hirsutum HOM05D003497 ORTHO05D003964 6.2e-35 152.9 507 28.4
Atru.chr5.2286 Acer truncatum HOM05D003497 ORTHO05D003964 8.1e-35 152.5 518 29.7
Thhalv10009461m.g Eutrema salsugineum HOM05D003497 ORTHO05D003964 1.1e-34 152.1 536 30.6
SEGI_36088 Sequoiadendron giganteum HOM05D003497 ORTHO05D003964 1.1e-34 152.1 517 30.8
MBI16_g32073_MAGBIO Magnolia biondii HOM05D003497 ORTHO05D003964 2.4e-34 151.0 336 34.2
Nitab4.5_0003918g0020 Nicotiana tabacum HOM05D003497 ORTHO05D003964 2.4e-34 151.0 530 30.0
Duzib132G0146 Durio zibethinus HOM05D003497 ORTHO05D003964 3.1e-34 150.6 524 28.4
PSO170G5054 Papaver somniferum HOM05D003497 ORTHO05D003964 3.1e-34 150.6 576 27.1
CSS0013379 Camellia sinensis var. sinensis HOM05D003497 ORTHO05D003964 4.0e-34 150.2 353 34.8
Phvul.007G047200 Phaseolus vulgaris HOM05D003497 ORTHO05D003964 4.0e-34 150.2 477 29.6
CSS0047045 Camellia sinensis var. sinensis HOM05D003497 ORTHO05D003964 5.3e-34 149.8 355 34.9
Ciclev10028208m.g Citrus clementina HOM05D003497 ORTHO05D003964 7.6e-33 146.0 552 28.6
SalBow6G6060 Salvia bowleyana HOM05D003497 ORTHO05D003964 7.6e-33 146.0 441 31.1
TPR.G21155 Trifolium pratense HOM05D003497 ORTHO05D003964 7.6e-33 146.0 500 30.4
AL1G37530 Arabidopsis lyrata HOM05D003497 ORTHO05D003964 1.3e-32 145.2 510 28.6
ECA234G0007 Erigeron canadensis HOM05D003497 ORTHO05D003964 1.7e-32 144.8 548 25.7
AT1G23780 Arabidopsis thaliana HOM05D003497 ORTHO05D003964 2.2e-32 144.4 504 28.6
BcaB03g14136 Brassica carinata HOM05D003497 ORTHO05D003964 2.2e-32 144.4 502 29.9
AUR62030867 Chenopodium quinoa HOM05D003497 ORTHO05D003964 2.2e-32 144.4 563 27.2
Peaxi162Scf00152g00641 Petunia axillaris HOM05D003497 ORTHO05D003964 2.9e-32 144.1 518 30.1
unitig_744.g24206 Utricularia gibba HOM05D003497 ORTHO05D003964 2.9e-32 144.1 536 28.9
VMungo0720G1031 Vigna mungo HOM05D003497 ORTHO05D003964 2.9e-32 144.1 431 29.9
Carub.0001s2329 Capsella rubella HOM05D003497 ORTHO05D003964 3.8e-32 143.7 491 29.3
Medtr1g106020 Medicago truncatula HOM05D003497 ORTHO05D003964 3.8e-32 143.7 504 30.2
Glyma.20G135900 Glycine max HOM05D003497 ORTHO05D003964 4.9e-32 143.3 433 29.8
Aa31LG7G7660 Aethionema arabicum HOM05D003497 ORTHO05D003964 8.4e-32 142.5 463 30.0
CARHR024190 Cardamine hirsuta HOM05D003497 ORTHO05D003964 1.1e-31 142.1 500 29.2
Actinidia28001 Actinidia chinensis HOM05D000349 ORTHO05D003964 4.2e-31 140.2 357 32.2
PGSC0003DMG400021329 Solanum tuberosum HOM05D003497 ORTHO05D003964 4.2e-31 140.2 521 29.4
Psat6g213160 Pisum sativum HOM05D003497 ORTHO05D003964 9.3e-31 139.0 475 30.9
Sopen01g002980 Solanum pennellii HOM05D003497 ORTHO05D003964 9.3e-31 139.0 521 29.4
CSS0013739 Camellia sinensis var. sinensis HOM05D003497 ORTHO05D003964 4.6e-30 136.7 259 35.9
MD05G1106300 Malus domestica HOM05D003497 ORTHO05D003964 2.3e-29 134.4 511 29.9
TWI14G0922 Tripterygium wilfordii HOM05D003497 ORTHO05D003964 1.5e-28 131.7 257 35.8
Solyc01g006990.4 Solanum lycopersicum HOM05D003497 ORTHO05D003964 1.9e-28 131.3 521 28.8
CAN.G911.43 Capsicum annuum HOM05D003497 ORTHO05D003964 9.6e-28 129.0 314 33.1
Gorai.005G229700 Gossypium raimondii HOM05D003497 ORTHO05D003964 9.6e-28 129.0 439 28.7
Cpa.g.c35687 Carica papaya HOM05D003497 ORTHO05D003964 2.1e-27 127.9 387 32.6
Atru.chr5.2290 Acer truncatum HOM05D003497 ORTHO05D003964 2.8e-27 127.5 276 30.8
CARHR164020 Cardamine hirsuta HOM05D003497 ORTHO05D003964 2.8e-27 127.5 396 30.3
Sp1g21160 Schrenkiella parvula HOM05D003497 ORTHO05D003964 3.6e-27 127.1 453 28.3
Gohir.D02G203142 Gossypium hirsutum HOM05D003497 ORTHO05D004787 6.2e-27 126.3 439 28.2
Gohir.A03G180900 Gossypium hirsutum HOM05D003497 ORTHO05D003964 8.1e-27 125.9 437 27.7
CARHR164040 Cardamine hirsuta HOM05D003497 ORTHO05D003964 1.8e-26 124.8 397 30.2
PGR142G0099 Punica granatum HOM05D003497 ORTHO05D003964 4.0e-26 123.6 537 28.7
Lsat_1_v5_gn_5_117220 Lactuca sativa HOM05D003497 ORTHO05D003964 1.2e-25 122.1 501 26.9
Sp7g01980 Schrenkiella parvula HOM05D003497 ORTHO05D003964 1.5e-25 121.7 425 27.8
Phvul.005G029200 Phaseolus vulgaris HOM05D003497 ORTHO05D003964 5.8e-25 119.8 422 28.4
EL10Ac9g22176 Beta vulgaris HOM05D003497 ORTHO05D003964 2.2e-24 117.9 546 25.8
RcHm_v2.0_Chr4g0407371 Rosa chinensis HOM05D003497 ORTHO05D003964 2.9e-24 117.5 266 33.8
Aqoxy5G00815 Aquilegia oxysepala HOM05D003497 ORTHO05D003964 3.8e-24 117.1 280 32.1
BolC4t26586H Brassica oleracea HOM05D003497 ORTHO05D003964 3.8e-24 117.1 420 29.0
THA.LOC104824678 Tarenaya hassleriana HOM05D003497 ORTHO05D003964 8.4e-24 115.9 487 26.3
BcaB03g11953 Brassica carinata HOM05D003497 ORTHO05D003964 1.9e-23 114.8 321 31.2
C04p49930 Brassica napus HOM05D003497 ORTHO05D003964 4.2e-23 113.6 420 29.0
Haze_10298 Corylus avellana HOM05D003497 ORTHO05D003964 9.3e-23 112.5 272 32.0
RcHm_v2.0_Chr4g0395411 Rosa chinensis HOM05D003497 ORTHO05D003964 1.6e-22 111.7 142 43.7
CDE04G1396 Ceratophyllum demersum HOM05D003497 ORTHO05D003964 3.5e-22 110.5 592 25.0
BraA04t17199Z Brassica rapa HOM05D003497 ORTHO05D003964 4.6e-22 110.2 191 34.6
Eucgr.I02498 Eucalyptus grandis HOM05D003497 ORTHO05D003964 6.0e-22 109.8 517 25.1
A04p15640 Brassica napus HOM05D003497 ORTHO05D003964 1.3e-21 108.6 227 33.0
AT1G23770 Arabidopsis thaliana HOM05D003497 ORTHO05D003964 5.1e-21 106.7 191 33.5
BcaB06g27743 Brassica carinata HOM05D003497 ORTHO05D003964 1.5e-20 105.1 235 31.5
BcaC02g08840 Brassica carinata HOM05D003497 ORTHO05D003964 1.5e-20 105.1 414 28.5
RcHm_v2.0_Chr4g0407381 Rosa chinensis HOM05D003497 ORTHO05D003964 1.5e-20 105.1 254 30.7
RcHm_v2.0_Chr4g0407391 Rosa chinensis HOM05D003497 ORTHO05D003964 1.9e-20 104.8 260 30.8
Medtr4g019560 Medicago truncatula HOM05D003497 ORTHO05D003964 5.6e-20 103.2 207 35.3
Phvul.005G029000 Phaseolus vulgaris HOM05D003497 ORTHO05D003964 7.4e-20 102.8 401 26.4
Mapoly0001s0353 Marchantia polymorpha HOM05D003497 ORTHO05D003964 9.6e-20 102.4 347 28.5
Migut.B00469 Erythranthe guttata HOM05D003497 ORTHO05D003964 1.3e-19 102.1 290 32.4
MD10G1110300 Malus domestica HOM05D003497 ORTHO05D003964 1.6e-19 101.7 205 33.2
Medtr7g057330 Medicago truncatula HOM05D003497 ORTHO05D003964 1.6e-19 101.7 203 35.0
AL1G37520 Arabidopsis lyrata HOM05D003497 ORTHO05D003964 3.7e-19 100.5 192 32.8
Carub.0001s2328 Capsella rubella HOM05D003497 ORTHO05D003964 4.8e-19 100.1 227 31.3
Zm00001eb051260 Zea mays HOM05D028645 ORTHO05D030730 4.8e-19 100.1 55 87.3
Zm00001eb197560 Zea mays HOM05D028645 ORTHO05D030730 4.8e-19 100.1 55 87.3
Zm00001eb313830 Zea mays HOM05D028645 ORTHO05D030730 4.8e-19 100.1 55 87.3
FvH4_5g20811 Fragaria vesca HOM05D003497 ORTHO05D003964 1.1e-18 99.0 260 29.6
Pp3c15_1340 Physcomitrium patens HOM05D003497 ORTHO05D003964 1.4e-18 98.6 471 27.6
Zm00001eb293930 Zea mays HOM05D028645 ORTHO05D030730 1.4e-18 98.6 55 85.5
MD10G1110700 Malus domestica HOM05D003497 ORTHO05D003964 1.8e-18 98.2 321 29.3
Dinv09537 Davidia involucrata HOM05D006380 ORTHO05D008400 2.4e-18 97.8 477 26.6
Phvul.005G037100 Phaseolus vulgaris HOM05D003497 ORTHO05D003964 2.4e-18 97.8 387 28.4
AagrBONN_evm.TU.Sc2ySwM_344.3993 Anthoceros agrestis HOM05D003497 ORTHO05D003964 4.0e-18 97.1 472 28.4
FAN04G2985 Fragaria x ananassa HOM05D003497 ORTHO05D003964 5.3e-18 96.7 263 28.1
Sed0000294 Sechium edule HOM05D003497 ORTHO05D003964 1.5e-17 95.1 385 26.5
MD10G1110600 Malus domestica HOM05D003497 ORTHO05D003964 4.5e-17 93.6 203 34.5
PSO017G7033 Papaver somniferum HOM05D003497 ORTHO05D003964 7.6e-17 92.8 252 29.0
PSO170G0850 Papaver somniferum HOM05D003497 ORTHO05D003964 7.6e-17 92.8 253 28.9
Ciclev10028907m.g Citrus clementina HOM05D003497 ORTHO05D003964 1.0e-16 92.4 263 29.7
Carub.0002s1705 Capsella rubella HOM05D003497 ORTHO05D003964 1.3e-16 92.0 361 26.0
FAN18G2835 Fragaria x ananassa HOM05D003497 ORTHO05D003964 2.9e-16 90.9 114 39.5
HanXRQChr10g0290301 Helianthus annuus HOM05D003497 ORTHO05D003964 3.8e-16 90.5 228 28.5
PGR102G1733 Punica granatum HOM05D003497 ORTHO05D003964 2.5e-15 87.8 245 29.4
SMO270G0122 Selaginella moellendorffii HOM05D003497 ORTHO05D003964 2.5e-15 87.8 179 33.5
Actinidia04396 Actinidia chinensis HOM05D003497 ORTHO05D003964 4.2e-15 87.0 264 30.3
MD10G1175800 Malus domestica HOM05D003497 ORTHO05D003964 1.2e-14 85.5 256 31.6
MD10G1110400 Malus domestica HOM05D003497 ORTHO05D003964 1.6e-14 85.1 108 42.6
PGR102G1148 Punica granatum HOM05D003497 ORTHO05D003964 1.6e-14 85.1 280 25.7
HanXRQChr10g0290281 Helianthus annuus HOM05D003497 ORTHO05D003964 4.6e-14 83.6 232 27.2
Migut.B00470 Erythranthe guttata HOM05D003497 ORTHO05D003964 7.9e-14 82.8 281 24.9
AL2G29670 Arabidopsis lyrata HOM05D003497 ORTHO05D003964 1.3e-13 82.0 190 30.0
COL.COLO4_32483 Corchorus olitorius HOM05D003497 ORTHO05D003964 6.7e-13 79.7 235 30.6
Sed0003270 Sechium edule HOM05D003497 ORTHO05D003964 8.7e-13 79.3 400 25.5
CBR_g19394 Chara braunii HOM05D003497 ORTHO05D003964 1.5e-12 78.6 100 44.0
HanXRQChr10g0290271 Helianthus annuus HOM05D003497 ORTHO05D003964 1.5e-12 78.6 106 37.7
Potri.015G020600 Populus trichocarpa HOM05D003497 ORTHO05D003964 1.5e-12 78.6 102 40.2
AT1G70360 Arabidopsis thaliana HOM05D003497 ORTHO05D003964 2.5e-12 77.8 179 29.1
Cre17.g738800 Chlamydomonas reinhardtii HOM05D003497 ORTHO05D003964 5.7e-12 76.6 157 37.6
Haze_10296 Corylus avellana HOM05D003497 ORTHO05D003964 7.4e-12 76.3 125 39.2
Os10g0130200 Oryza sativa ssp. japonica HOM05D019728 ORTHO05D023023 8.2e-11 72.8 220 30.0
BcaC02g08839 Brassica carinata HOM05D003497 ORTHO05D003964 1.1e-10 72.4 148 32.4
AL5G35170 Arabidopsis lyrata HOM05D003497 ORTHO05D003964 1.8e-10 71.6 119 31.9
Os10g0130300 Oryza sativa ssp. japonica HOM05D019728 ORTHO05D023023 3.1e-10 70.9 229 31.0
Sed0016990 Sechium edule HOM05D003497 ORTHO05D003964 4.1e-10 70.5 375 24.8
CiPaw.08G128300 Carya illinoinensis HOM05D000212 ORTHO05D003964 7.6e-09 66.2 94 39.4
MCO07G198 Micromonas commoda HOM05D003497 ORTHO05D003964 1.7e-08 65.1 393 26.0
Sed0009840 Sechium edule HOM05D003497 ORTHO05D003964 3.8e-08 63.9 190 28.4
Lsat_1_v5_gn_5_117240 Lactuca sativa HOM05D003497 ORTHO05D003964 1.1e-07 62.4 80 40.0
FAN17G0318 Fragaria x ananassa HOM05D003497 ORTHO05D003964 2.5e-07 61.2 79 41.8
PSO170G1569 Papaver somniferum HOM05D003497 ORTHO05D003964 4.2e-07 60.5 87 37.9
PSO017G5705 Papaver somniferum HOM05D003497 ORTHO05D003964 9.3e-07 59.3 111 31.5
Haze_10290 Corylus avellana HOM05D003497 ORTHO05D003964 2.7e-06 57.8 306 24.2
C03p57300 Brassica napus HOM05D003497 ORTHO05D003964 7.9e-06 56.2 165 29.7
Potri.017G134500 Populus trichocarpa HOM05D003497 ORTHO05D003964 7.9e-06 56.2 50 50.0


User provided reference genes

Program Settings