Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb009310 Zea mays HOM05D001176 ORTHO05D007019 0.0e+00 1304.7 659 100.0
MBI04_g37458_MAGBIO Magnolia biondii HOM05D001176 ORTHO05D007019 1.6e-275 952.6 691 70.0
CSS0027781 Camellia sinensis var. sinensis HOM05D001176 ORTHO05D007019 1.2e-270 936.4 688 69.5
CiPaw.11G075700 Carya illinoinensis HOM05D001176 ORTHO05D007019 1.5e-270 936.0 692 70.2
Lj2g0027044 Lotus japonicus HOM05D001176 ORTHO05D007019 5.9e-270 934.1 690 69.6
TAR375G1104 Trochodendron aralioides HOM05D001176 ORTHO05D007019 5.9e-270 934.1 693 69.1
Duzib205G1840 Durio zibethinus HOM05D001176 ORTHO05D007019 1.7e-269 932.6 686 69.7
Eucgr.D02557 Eucalyptus grandis HOM05D001176 ORTHO05D007019 5.0e-269 931.0 688 69.5
Glyma.11G090100 Glycine max HOM05D001176 ORTHO05D007019 5.0e-269 931.0 688 69.8
Thecc.03G318700 Theobroma cacao HOM05D001176 ORTHO05D007019 9.4e-268 926.8 686 69.1
COL.COLO4_11286 Corchorus olitorius HOM05D001176 ORTHO05D007019 2.7e-267 925.2 686 69.5
Phvul.002G121100 Phaseolus vulgaris HOM05D001176 ORTHO05D007019 1.4e-266 922.9 688 69.2
Psat2g146720 Pisum sativum HOM05D001176 ORTHO05D007019 3.0e-266 921.8 689 68.7
Gorai.004G178200 Gossypium raimondii HOM05D001176 ORTHO05D007019 2.0e-265 919.1 693 67.8
Lalb_Chr16g0380331 Lupinus albus HOM05D001176 ORTHO05D007019 2.0e-265 919.1 691 69.0
GSVIVG01013198001 Vitis vinifera HOM05D001176 ORTHO05D007019 3.3e-265 918.3 685 67.7
Haze_02517 Corylus avellana HOM05D001176 ORTHO05D007019 5.7e-265 917.5 724 66.9
Lalb_Chr09g0324961 Lupinus albus HOM05D001176 ORTHO05D007019 9.7e-265 916.8 685 69.2
Medtr5g025410 Medicago truncatula HOM05D001176 ORTHO05D007019 9.7e-265 916.8 690 68.7
Gohir.D08G170800 Gossypium hirsutum HOM05D001176 ORTHO05D007019 1.3e-264 916.4 693 67.7
Atru.chr8.2633 Acer truncatum HOM05D001176 ORTHO05D007019 1.7e-264 916.0 689 68.7
Ciclev10011152m.g Citrus clementina HOM05D001176 ORTHO05D007019 2.8e-264 915.2 682 68.9
Cc08_g05630 Coffea canephora HOM05D001176 ORTHO05D007019 4.8e-264 914.4 691 68.0
Nitab4.5_0000030g0410 Nicotiana tabacum HOM05D001176 ORTHO05D007019 4.8e-264 914.4 690 67.7
Gohir.A08G149700 Gossypium hirsutum HOM05D001176 ORTHO05D007019 2.4e-263 912.1 690 67.8
PSO732G0580 Papaver somniferum HOM05D001176 ORTHO05D007019 4.1e-263 911.4 693 67.0
SalBow4G1488 Salvia bowleyana HOM05D001176 ORTHO05D007019 4.1e-263 911.4 692 67.1
CsaV3_4G027950 Cucumis sativus L. HOM05D001176 ORTHO05D007019 7.0e-263 910.6 689 68.5
PGR031G2625 Punica granatum HOM05D001176 ORTHO05D007019 7.0e-263 910.6 694 67.3
VMungo1215G1610 Vigna mungo HOM05D001176 ORTHO05D007019 9.1e-263 910.2 688 68.3
Aqoxy7G00899 Aquilegia oxysepala HOM05D001176 ORTHO05D007019 1.2e-262 909.8 690 68.7
Lj9C202G6 Lonicera japonica HOM05D001176 ORTHO05D007019 1.2e-262 909.8 687 68.1
Sed0008250 Sechium edule HOM05D001176 ORTHO05D007019 3.5e-262 908.3 686 68.1
AUR62017508 Chenopodium quinoa HOM05D001176 ORTHO05D007019 5.9e-262 907.5 690 67.2
RcHm_v2.0_Chr6g0304421 Rosa chinensis HOM05D001176 ORTHO05D007019 7.7e-262 907.1 687 67.2
FAN20G0920 Fragaria x ananassa HOM05D001176 ORTHO05D007019 1.7e-261 906.0 687 67.1
Prupe.1G077200 Prunus persica HOM05D001176 ORTHO05D007019 1.7e-261 906.0 685 67.6
Rhsim11G0036600 Rhododendron simsii HOM05D001176 ORTHO05D007019 1.7e-261 906.0 737 64.6
MSTRG.25741 Avicennia marina HOM05D001176 ORTHO05D007019 2.2e-261 905.6 691 67.0
Manes.15G189800 Manihot esculenta HOM05D001176 ORTHO05D007019 2.2e-261 905.6 688 68.6
ATR0665G266 Amborella trichopoda HOM05D001176 ORTHO05D007019 2.9e-261 905.2 693 66.2
PSO675G7478 Papaver somniferum HOM05D001176 ORTHO05D007019 2.9e-261 905.2 693 67.0
HanXRQChr03g0068151 Helianthus annuus HOM05D001176 ORTHO05D007019 6.5e-261 904.0 685 67.4
FAN27G0701 Fragaria x ananassa HOM05D001176 ORTHO05D007019 1.5e-260 902.9 687 67.2
THA.LOC104798522 Tarenaya hassleriana HOM05D001176 ORTHO05D007019 2.5e-260 902.1 685 68.0
Potri.004G236600 Populus trichocarpa HOM05D001176 ORTHO05D007019 4.2e-260 901.4 687 67.5
CDE04G2738 Ceratophyllum demersum HOM05D001176 ORTHO05D007019 5.5e-260 901.0 691 66.3
Sc21g0000770 Simmondsia chinensis HOM05D001176 ORTHO05D007019 5.5e-260 901.0 691 67.6
Ca_25034_v3 Cicer arietinum L. HOM05D001176 ORTHO05D007019 7.2e-260 900.6 676 68.9
Migut.A00530 Erythranthe guttata HOM05D001176 ORTHO05D007019 3.6e-259 898.3 693 68.0
CAN.G930.8 Capsicum annuum HOM05D001176 ORTHO05D007019 6.1e-259 897.5 690 66.8
MELO3C010519.2 Cucumis melo HOM05D001176 ORTHO05D007019 6.1e-259 897.5 690 68.0
DCAR_001483 Daucus carota HOM05D001176 ORTHO05D007019 1.8e-258 896.0 688 66.4
AT1G31780 Arabidopsis thaliana HOM05D001176 ORTHO05D007019 8.8e-258 893.6 680 68.4
BcaB07g32825 Brassica carinata HOM05D001176 ORTHO05D007019 2.0e-257 892.5 680 67.8
EL10Ac5g11241 Beta vulgaris HOM05D001176 ORTHO05D007019 4.4e-257 891.3 690 66.2
ECA240G2428 Erigeron canadensis HOM05D001176 ORTHO05D007019 7.5e-257 890.6 685 67.0
Lsat_1_v5_gn_9_124460 Lactuca sativa HOM05D001176 ORTHO05D007019 1.3e-256 889.8 700 66.6
Oeu039635.2 Olea europaea HOM05D001176 ORTHO05D007019 1.3e-256 889.8 736 63.9
AL1G45850 Arabidopsis lyrata HOM05D001176 ORTHO05D007019 1.7e-256 889.4 680 67.8
Sopen08g024070 Solanum pennellii HOM05D001176 ORTHO05D007019 2.8e-256 888.6 690 65.9
Solyc08g075440.4 Solanum lycopersicum HOM05D001176 ORTHO05D007019 3.7e-256 888.3 690 65.9
Carub.0001s3008 Capsella rubella HOM05D001176 ORTHO05D007019 1.4e-255 886.3 680 67.6
ClCG11G016030 Citrullus lanatus HOM05D001176 ORTHO05D007019 1.8e-255 885.9 689 67.1
Sp1g27470 Schrenkiella parvula HOM05D001176 ORTHO05D007019 1.8e-255 885.9 680 67.8
Nn1g09379 Nelumbo nucifera HOM05D001176 ORTHO05D007019 3.1e-255 885.2 690 66.2
TWI79G0428 Tripterygium wilfordii HOM05D001176 ORTHO05D007019 5.3e-255 884.4 685 66.9
A09p34570 Brassica napus HOM05D001176 ORTHO05D007019 7.0e-255 884.0 680 67.5
BraA09t38996Z Brassica rapa HOM05D001176 ORTHO05D007019 9.1e-255 883.6 680 67.5
BcaC05g27192 Brassica carinata HOM05D001176 ORTHO05D007019 3.5e-254 881.7 680 67.4
BolC5t31821H Brassica oleracea HOM05D001176 ORTHO05D007019 3.5e-254 881.7 680 67.4
Thhalv10006980m.g Eutrema salsugineum HOM05D001176 ORTHO05D007019 1.3e-253 879.8 680 67.2
CARHR031080 Cardamine hirsuta HOM05D001176 ORTHO05D007019 8.5e-253 877.1 680 67.1
Aa31LG2G14290 Aethionema arabicum HOM05D001176 ORTHO05D007019 1.5e-252 876.3 682 67.2
Ah.05g167880 Amaranthus hybridus HOM05D001176 ORTHO05D007019 2.5e-252 875.5 721 63.0
C05p30980 Brassica napus HOM05D001176 ORTHO05D007019 6.1e-251 870.9 680 66.8
SGA_v2.0_scaffold96G29093 Striga asiatica HOM05D001176 ORTHO05D007019 8.0e-251 870.5 793 58.6
Peaxi162Scf00193g00811 Petunia axillaris HOM05D001176 ORTHO05D007019 2.0e-249 865.9 690 65.7
TPR.G8989 Trifolium pratense HOM05D001176 ORTHO05D007019 2.6e-249 865.5 646 68.6
Sabra01G0180800 Salix brachista HOM05D001176 ORTHO05D007019 1.6e-246 856.3 687 64.9
SEGI_32977 Sequoiadendron giganteum HOM05D001176 ORTHO05D007019 4.5e-246 854.7 701 63.9
Gohir.D08G170700 Gossypium hirsutum HOM05D001176 ORTHO05D007019 5.0e-245 851.3 693 63.9
Nitab4.5_0001333g0050 Nicotiana tabacum HOM05D001176 ORTHO05D007019 5.0e-245 851.3 690 64.1
Cpa.g.sc90.31 Carica papaya HOM05D001176 ORTHO05D007019 6.1e-243 844.3 688 63.5
unitig_748.g7392 Utricularia gibba HOM05D001176 ORTHO05D007019 4.9e-240 834.7 690 62.8
HPP92_018761 Vanilla planifolia HOM05D001176 ORTHO05D007019 3.1e-239 832.0 564 74.3
AUR62015049 Chenopodium quinoa HOM05D001176 ORTHO05D007019 8.9e-234 813.9 661 64.0
Mapoly0009s0222 Marchantia polymorpha HOM05D001176 ORTHO05D007019 3.0e-229 798.9 717 58.2
Actinidia01255 Actinidia chinensis HOM05D001176 ORTHO05D007019 1.3e-221 773.5 557 71.5
Pp3c2_23210 Physcomitrium patens HOM05D001176 ORTHO05D007019 8.9e-218 760.8 713 55.3
QL12p003889 Quercus lobata HOM05D001176 ORTHO05D007019 6.2e-211 738.0 1195 40.0
Oeu014108.2 Olea europaea HOM05D001176 ORTHO05D007019 6.4e-208 728.0 773 53.7
FvH4_2g37280 Fragaria vesca HOM05D001176 ORTHO05D007019 4.4e-201 705.3 543 68.7
FAN15G1703 Fragaria x ananassa HOM05D001176 ORTHO05D007019 6.2e-195 684.9 472 72.5
SMO339G0033 Selaginella moellendorffii HOM05D001176 ORTHO05D007019 1.3e-192 677.2 697 53.1
AagrBONN_evm.TU.Sc2ySwM_362.2951 Anthoceros agrestis HOM05D001176 ORTHO05D007019 3.8e-192 675.6 639 54.5
PGSC0003DMG400001956 Solanum tuberosum HOM05D001176 ORTHO05D007019 1.9e-180 636.7 509 63.9
MD13G1243800 Malus domestica HOM05D001176 ORTHO05D007019 1.3e-173 614.0 513 61.2
MD13G1244000 Malus domestica HOM05D001176 ORTHO05D007019 1.1e-164 584.3 413 70.2
Cre13.g587750 Chlamydomonas reinhardtii HOM05D001176 ORTHO05D007019 1.0e-136 491.5 703 40.0
PRCOL_00001869 Prasinoderma coloniale HOM05D001176 ORTHO05D007019 2.2e-136 490.3 711 42.1
MCO03G158 Micromonas commoda HOM05D001176 ORTHO05D007019 2.7e-134 483.4 701 39.5
Dinv41808 Davidia involucrata HOM05D001176 ORTHO05D007019 1.7e-115 421.0 265 80.4
Actinidia32787 Actinidia chinensis HOM05D001176 ORTHO05D007019 1.1e-111 408.3 658 41.3
CBR_g61503 Chara braunii HOM05D001176 ORTHO05D007019 1.6e-105 387.9 470 46.2
CSS0004945 Camellia sinensis var. sinensis HOM05D001176 ORTHO05D007019 1.5e-92 344.7 655 38.2
CDE07G2068 Ceratophyllum demersum HOM05D004834 ORTHO05D006247 8.4e-91 339.0 652 36.0
Cc07_g20650 Coffea canephora HOM05D001176 ORTHO05D007019 1.2e-89 335.1 417 49.4
CSS0030107 Camellia sinensis var. sinensis HOM05D001176 ORTHO05D007019 5.1e-88 329.7 232 69.0
Dinv41809 Davidia involucrata HOM05D001176 ORTHO05D007019 1.7e-83 314.7 274 61.3
CSS0012136 Camellia sinensis var. sinensis HOM05D001176 ORTHO05D007019 6.0e-81 306.2 625 37.3
MD13G1243900 Malus domestica HOM05D001176 ORTHO05D007019 1.5e-68 265.0 243 57.2
vmacro00085 Vaccinium macrocarpon HOM05D001176 ORTHO05D007019 5.8e-68 263.1 297 52.2
CBR_g61501 Chara braunii HOM05D001176 ORTHO05D007019 9.0e-61 239.2 176 67.0
FAN15G2248 Fragaria x ananassa HOM05D001176 ORTHO05D007019 4.2e-58 230.3 217 55.3
Hund16023 Selenicereus undatus HOM05D001176 ORTHO05D007019 2.1e-57 228.0 200 61.5
Os03g0225600 Oryza sativa ssp. japonica HOM05D001176 ORTHO05D007019 1.4e-50 205.3 113 87.6
arahy.Tifrunner.gnm1.ann1.7XHH75 Arachis hypogaea HOM05D001176 ORTHO05D007019 2.5e-42 177.9 138 66.7
arahy.Tifrunner.gnm1.ann1.V0K3WG Arachis hypogaea HOM05D001176 ORTHO05D007019 2.5e-42 177.9 138 66.7
Zm00001eb399610 Zea mays HOM05D001176 ORTHO05D007019 6.5e-35 153.3 146 61.0
Glyma.01G154450 Glycine max HOM05D001176 ORTHO05D007019 8.8e-32 142.9 120 65.8
HPP92_018762 Vanilla planifolia HOM05D001176 ORTHO05D007019 9.7e-31 139.4 82 75.6
Glyma.01G154501 Glycine max HOM05D001176 ORTHO05D007019 3.7e-22 110.9 99 56.6
CsaV3_4G027980 Cucumis sativus L. HOM05D001176 ORTHO05D007019 5.0e-19 100.5 201 37.8
TPR.G11479 Trifolium pratense HOM05D001176 ORTHO05D007019 6.6e-11 73.6 58 65.5
Glyma.01G154551 Glycine max HOM05D001176 ORTHO05D214389 9.5e-10 69.7 84 51.2


User provided reference genes

Program Settings