Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb009230 Zea mays HOM05D002249 ORTHO05D002443 1.4e-44 182.6 90 100.0
Zm00001eb057880 Zea mays HOM05D002249 ORTHO05D002443 4.0e-44 181.0 90 98.9
Zm00001eb257000 Zea mays HOM05D002249 ORTHO05D002443 5.2e-36 154.1 81 96.3
Zm00001eb421410 Zea mays HOM05D002249 ORTHO05D002443 5.2e-36 154.1 81 96.3
Zm00001eb225730 Zea mays HOM05D002249 ORTHO05D002443 1.5e-35 152.5 81 95.1
Os02g0780700 Oryza sativa ssp. japonica HOM05D002249 ORTHO05D002443 1.9e-22 109.0 84 70.2
CSS0005352 Camellia sinensis var. sinensis HOM05D002249 ORTHO05D002443 1.1e-12 76.6 90 47.8
MBI13_g35423_MAGBIO Magnolia biondii HOM05D002249 ORTHO05D002443 1.1e-12 76.6 91 46.2
Sc15g0000530 Simmondsia chinensis HOM05D002249 ORTHO05D002443 1.1e-12 76.6 84 52.4
Glyma.16G009100 Glycine max HOM05D002249 ORTHO05D002443 1.8e-12 75.9 74 55.4
Thecc.06G122800 Theobroma cacao HOM05D002249 ORTHO05D002443 3.1e-12 75.1 90 48.9
Nitab4.5_0002898g0090 Nicotiana tabacum HOM05D002249 ORTHO05D002443 5.3e-12 74.3 88 51.1
Peaxi162Scf00038g00203 Petunia axillaris HOM05D002249 ORTHO05D002443 5.3e-12 74.3 84 53.6
Solyc03g122280.3 Solanum lycopersicum HOM05D002249 ORTHO05D002443 5.3e-12 74.3 87 50.6
Sopen03g041020 Solanum pennellii HOM05D002249 ORTHO05D002443 5.3e-12 74.3 87 50.6
PGSC0003DMG400022898 Solanum tuberosum HOM05D002249 ORTHO05D002443 6.9e-12 73.9 88 50.0
Manes.11G017300 Manihot esculenta HOM05D002249 ORTHO05D002443 9.0e-12 73.6 82 50.0
Nitab4.5_0009304g0020 Nicotiana tabacum HOM05D002249 ORTHO05D002443 9.0e-12 73.6 85 48.2
Rhsim08G0240400 Rhododendron simsii HOM05D002249 ORTHO05D002443 9.0e-12 73.6 90 47.8
Atru.chr1.4041 Acer truncatum HOM05D002249 ORTHO05D002443 1.5e-11 72.8 68 55.9
Ca_23399_v3 Cicer arietinum L. HOM05D002249 ORTHO05D002443 1.5e-11 72.8 73 52.1
Duzib235G0425 Durio zibethinus HOM05D002249 ORTHO05D002443 1.5e-11 72.8 90 48.9
HPP92_013023 Vanilla planifolia HOM05D002249 ORTHO05D002443 1.5e-11 72.8 80 53.8
Lalb_Chr17g0343531 Lupinus albus HOM05D002249 ORTHO05D002443 2.0e-11 72.4 81 50.6
QL05p003951 Quercus lobata HOM05D002249 ORTHO05D002443 2.0e-11 72.4 80 51.2
CAN.G862.48 Capsicum annuum HOM05D002249 ORTHO05D002443 2.6e-11 72.0 93 46.2
Lj3g0004850 Lotus japonicus HOM05D002249 ORTHO05D002443 2.6e-11 72.0 82 50.0
COL.COLO4_30734 Corchorus olitorius HOM05D002249 ORTHO05D002443 3.4e-11 71.6 68 55.9
Glyma.07G040500 Glycine max HOM05D002249 ORTHO05D002443 3.4e-11 71.6 74 54.1
TPR.G16740 Trifolium pratense HOM05D002249 ORTHO05D002443 3.4e-11 71.6 73 53.4
TAR636G1335 Trochodendron aralioides HOM05D002249 ORTHO05D002443 3.4e-11 71.6 87 49.4
Duzib160G0563 Durio zibethinus HOM05D002249 ORTHO05D002443 4.4e-11 71.2 90 47.8
Aqoxy7G04100 Aquilegia oxysepala HOM05D002249 ORTHO05D002443 5.8e-11 70.9 68 55.9
Cpa.g.sc25.136 Carica papaya HOM05D002249 ORTHO05D002443 7.6e-11 70.5 68 57.4
CiPaw.01G217000 Carya illinoinensis HOM05D002249 ORTHO05D002443 7.6e-11 70.5 75 53.3
Cc04_g01170 Coffea canephora HOM05D002249 ORTHO05D002443 7.6e-11 70.5 74 51.4
TWI59G1101 Tripterygium wilfordii HOM05D002249 ORTHO05D002443 7.6e-11 70.5 86 47.7
CANSAT56G1355 Cannabis sativa HOM05D002249 ORTHO05D002443 9.9e-11 70.1 88 44.3
Eucgr.F04399 Eucalyptus grandis HOM05D002249 ORTHO05D002443 9.9e-11 70.1 75 50.7
EL10Ac7g16433 Beta vulgaris HOM05D002249 ORTHO05D002443 1.3e-10 69.7 75 57.3
Gorai.010G174700 Gossypium raimondii HOM05D002249 ORTHO05D002443 1.3e-10 69.7 75 53.3
Hma1.2p1_0229F.1_g096660 Hydrangea macrophylla HOM05D002249 ORTHO05D002443 1.3e-10 69.7 74 51.4
Hma1.2p1_0291F.1_g114900 Hydrangea macrophylla HOM05D002249 ORTHO05D002443 1.3e-10 69.7 74 51.4
Psat4g168000 Pisum sativum HOM05D002249 ORTHO05D002443 1.3e-10 69.7 73 52.1
Haze_16048 Corylus avellana HOM05D002249 ORTHO05D004685 1.7e-10 69.3 68 55.9
TWI14G1185 Tripterygium wilfordii HOM05D002249 ORTHO05D002443 1.7e-10 69.3 85 50.6
SalBow7G3278 Salvia bowleyana HOM05D002249 ORTHO05D002443 2.2e-10 68.9 84 46.4
Ciclev10025081m.g Citrus clementina HOM05D002249 ORTHO05D002443 2.9e-10 68.6 68 55.9
Gohir.D06G149700 Gossypium hirsutum HOM05D002249 ORTHO05D002443 2.9e-10 68.6 75 52.0
unitig_0.g2219 Utricularia gibba HOM05D002249 ORTHO05D002443 2.9e-10 68.6 78 48.7
Gohir.A06G143800 Gossypium hirsutum HOM05D002249 ORTHO05D002443 3.8e-10 68.2 75 52.0
vmacro15044 Vaccinium macrocarpon HOM05D002249 ORTHO05D002443 3.8e-10 68.2 68 51.5
CiPaw.02G134700 Carya illinoinensis HOM05D002249 ORTHO05D002443 8.4e-10 67.0 76 48.7
AUR62001455 Chenopodium quinoa HOM05D002249 ORTHO05D002443 8.4e-10 67.0 87 47.1
AUR62009911 Chenopodium quinoa HOM05D002249 ORTHO05D002443 1.1e-09 66.6 87 46.0
HanXRQChr09g0277001 Helianthus annuus HOM05D002249 ORTHO05D002443 1.1e-09 66.6 92 45.7
MD17G1165600 Malus domestica HOM05D002249 ORTHO05D002443 1.1e-09 66.6 96 42.7
TAR624G0854 Trochodendron aralioides HOM05D002249 ORTHO05D002443 1.1e-09 66.6 76 51.3
VMungo0331G1604 Vigna mungo HOM05D002249 ORTHO05D002443 1.4e-09 66.2 81 48.1
Phvul.010G128300 Phaseolus vulgaris HOM05D002249 ORTHO05D002443 1.9e-09 65.9 83 49.4
ATR0053G041 Amborella trichopoda HOM05D002249 ORTHO05D002443 2.4e-09 65.5 86 43.0
FAN09G3698 Fragaria x ananassa HOM05D002249 ORTHO05D002443 2.4e-09 65.5 93 43.0
MD09G1180000 Malus domestica HOM05D002249 ORTHO05D002443 2.4e-09 65.5 75 48.0
Cfa003520 Carpinus fangiana HOM05D002249 ORTHO05D002443 3.2e-09 65.1 75 49.3
Prupe.3G038800 Prunus persica HOM05D002249 ORTHO05D002443 4.2e-09 64.7 101 40.6
DCAR_022685 Daucus carota HOM05D002249 ORTHO05D002443 9.3e-09 63.5 82 46.3
FvH4_6g35030 Fragaria vesca HOM05D002249 ORTHO05D002443 9.3e-09 63.5 92 42.4
FAN05G1044 Fragaria x ananassa HOM05D002249 ORTHO05D002443 9.3e-09 63.5 92 42.4
FAN14G2969 Fragaria x ananassa HOM05D002249 ORTHO05D002443 9.3e-09 63.5 92 42.4
Lalb_Chr04g0253661 Lupinus albus HOM05D002249 ORTHO05D002443 1.2e-08 63.2 70 50.0
MSTRG.9526 Avicennia marina HOM05D002249 ORTHO05D002443 2.1e-08 62.4 77 44.2
Lalb_Chr10g0101421 Lupinus albus HOM05D002249 ORTHO05D002443 2.1e-08 62.4 70 48.6
arahy.Tifrunner.gnm1.ann1.XAN60E Arachis hypogaea HOM05D002249 ORTHO05D002443 2.7e-08 62.0 94 38.3
Potri.003G067900 Populus trichocarpa HOM05D002249 ORTHO05D002443 3.5e-08 61.6 69 50.7
SGA_v2.0_scaffold4G02071 Striga asiatica HOM05D002249 ORTHO05D002443 3.5e-08 61.6 86 45.3
arahy.Tifrunner.gnm1.ann1.MG6I4X Arachis hypogaea HOM05D002249 ORTHO05D002443 4.6e-08 61.2 94 38.3
C01p50510 Brassica napus HOM05D002249 ORTHO05D002443 4.6e-08 61.2 85 48.2
BolC1t05002H Brassica oleracea HOM05D002249 ORTHO05D002443 4.6e-08 61.2 85 48.2
Migut.D00932 Erythranthe guttata HOM05D002249 ORTHO05D002443 4.6e-08 61.2 79 43.0
Hund18682 Selenicereus undatus HOM05D002249 ORTHO05D002443 4.6e-08 61.2 68 52.9
ECA232G1947 Erigeron canadensis HOM05D002249 ORTHO05D002443 6.0e-08 60.8 89 42.7
Lsat_1_v5_gn_4_92880 Lactuca sativa HOM05D002249 ORTHO05D002443 6.0e-08 60.8 87 44.8
A01p39570 Brassica napus HOM05D002249 ORTHO05D002443 7.8e-08 60.5 88 46.6
BraA01t03997Z Brassica rapa HOM05D002249 ORTHO05D002443 7.8e-08 60.5 88 46.6
AT3G14075 Arabidopsis thaliana HOM05D002249 ORTHO05D002443 1.3e-07 59.7 86 44.2
FAN02G4185 Fragaria x ananassa HOM05D002249 ORTHO05D002443 1.3e-07 59.7 92 40.2
Oeu000396.3 Olea europaea HOM05D002249 ORTHO05D002443 1.3e-07 59.7 80 41.2
Aa31LG8G1300 Aethionema arabicum HOM05D002249 ORTHO05D002443 1.7e-07 59.3 85 45.9
MELO3C022670.2 Cucumis melo HOM05D002249 ORTHO05D002443 1.7e-07 59.3 72 52.8
Thhalv10020264m.g Eutrema salsugineum HOM05D002249 ORTHO05D002443 1.7e-07 59.3 88 47.7
Sp3g12330 Schrenkiella parvula HOM05D002249 ORTHO05D002443 1.7e-07 59.3 86 47.7
AL3G26300 Arabidopsis lyrata HOM05D002249 ORTHO05D002443 2.3e-07 58.9 86 43.0
Sabra03G0039800 Salix brachista HOM05D002249 ORTHO05D002443 2.3e-07 58.9 69 47.8
CARHR088930 Cardamine hirsuta HOM05D002249 ORTHO05D002443 3.0e-07 58.5 85 44.7
CsaV3_3G030770 Cucumis sativus L. HOM05D002249 ORTHO05D002443 3.0e-07 58.5 75 50.7
PGR119G0494 Punica granatum HOM05D002249 ORTHO05D002443 5.1e-07 57.8 72 48.6
Sed0005200 Sechium edule HOM05D002249 ORTHO05D002443 6.6e-07 57.4 82 46.3
BcaNung04889 Brassica carinata HOM05D002249 ORTHO05D002443 8.7e-07 57.0 86 44.2
BcaNung06668 Brassica carinata HOM05D002249 ORTHO05D002443 8.7e-07 57.0 86 44.2
MSTRG.4548 Avicennia marina HOM05D002249 ORTHO05D002443 1.1e-06 56.6 88 39.8
Carub.0003s1368 Capsella rubella HOM05D002249 ORTHO05D002443 1.1e-06 56.6 85 41.2
ClCG07G014540 Citrullus lanatus HOM05D002249 ORTHO05D002443 1.1e-06 56.6 70 48.6
THA.LOC104822661 Tarenaya hassleriana HOM05D002249 ORTHO05D002443 1.1e-06 56.6 78 44.9
PSO724G0881 Papaver somniferum HOM05D002249 ORTHO05D002443 5.6e-06 54.3 81 40.7


User provided reference genes

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