Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb008900 Zea mays HOM05D005068 ORTHO05D007561 0.0e+00 1857.8 1006 100.0
Os09g0116400 Oryza sativa ssp. japonica HOM05D005068 ORTHO05D007561 0.0e+00 1239.2 1024 69.3
HPP92_014041 Vanilla planifolia HOM05D005068 ORTHO05D007561 7.1e-267 924.5 1009 53.4
CSS0048439 Camellia sinensis var. sinensis HOM05D005068 ORTHO05D007561 5.3e-254 881.7 1041 50.2
TAR628G1511 Trochodendron aralioides HOM05D005068 ORTHO05D007561 3.4e-253 879.0 1015 51.6
CSS0009347 Camellia sinensis var. sinensis HOM05D005068 ORTHO05D007561 5.8e-253 878.2 1041 50.1
Gohir.A10G051500 Gossypium hirsutum HOM05D005068 ORTHO05D007561 2.5e-251 872.8 1050 52.5
Manes.09G018800 Manihot esculenta HOM05D005068 ORTHO05D007561 2.5e-251 872.8 1089 49.9
Sed0003275 Sechium edule HOM05D005068 ORTHO05D007561 7.9e-250 867.8 1016 51.1
Gorai.011G056800 Gossypium raimondii HOM05D005068 ORTHO05D007561 1.0e-249 867.5 1051 52.5
CDE05G0629 Ceratophyllum demersum HOM05D005068 ORTHO05D007561 6.7e-249 864.8 1006 51.9
Gohir.D10G053200 Gossypium hirsutum HOM05D005068 ORTHO05D007561 6.7e-249 864.8 1051 52.4
CiPaw.01G213900 Carya illinoinensis HOM05D005068 ORTHO05D007561 1.1e-248 864.0 1066 49.9
CsaV3_7G034120 Cucumis sativus L. HOM05D005068 ORTHO05D007561 2.4e-246 856.3 1037 49.4
Sed0017975 Sechium edule HOM05D005068 ORTHO05D007561 2.4e-246 856.3 1014 50.1
MELO3C024322.2 Cucumis melo HOM05D005068 ORTHO05D007561 6.9e-246 854.7 1035 50.0
QL05p001958 Quercus lobata HOM05D005068 ORTHO05D007561 2.0e-245 853.2 1090 48.9
PGR102G2847 Punica granatum HOM05D005068 ORTHO05D007561 2.6e-245 852.8 1012 50.6
CANSAT01G1537 Cannabis sativa HOM05D005068 ORTHO05D007561 2.9e-244 849.4 1041 52.2
Ciclev10024779m.g Citrus clementina HOM05D005068 ORTHO05D007561 3.8e-244 849.0 1073 51.7
GSVIVG01016696001 Vitis vinifera HOM05D005068 ORTHO05D007561 6.5e-244 848.2 1058 49.5
CAN.G790.67 Capsicum annuum HOM05D005068 ORTHO05D007561 1.1e-243 847.4 1005 50.7
arahy.Tifrunner.gnm1.ann1.JS5XG8 Arachis hypogaea HOM05D005068 ORTHO05D007561 2.5e-243 846.3 1057 49.1
MD09G1175700 Malus domestica HOM05D005068 ORTHO05D007561 3.6e-242 842.4 1091 47.2
Phvul.010G125200 Phaseolus vulgaris HOM05D005068 ORTHO05D007561 3.6e-242 842.4 1064 49.1
Solyc03g123530.4 Solanum lycopersicum HOM05D005068 ORTHO05D007561 6.1e-242 841.6 1014 49.2
Medtr5g019130 Medicago truncatula HOM05D005068 ORTHO05D007561 1.4e-241 840.5 1028 51.3
Lj3g0023295 Lotus japonicus HOM05D005068 ORTHO05D007561 1.8e-241 840.1 1032 52.3
Prupe.3G034700 Prunus persica HOM05D005068 ORTHO05D007561 5.1e-241 838.6 864 54.6
Eucgr.J02606 Eucalyptus grandis HOM05D005068 ORTHO05D007561 6.7e-241 838.2 921 52.6
FvH4_6g35460 Fragaria vesca HOM05D005068 ORTHO05D007561 6.7e-241 838.2 894 54.8
Potri.001G164100 Populus trichocarpa HOM05D005068 ORTHO05D007561 1.1e-240 837.4 1066 49.4
Atru.chr1.4129 Acer truncatum HOM05D005068 ORTHO05D007561 1.5e-240 837.0 1064 49.7
PSO384G5027 Papaver somniferum HOM05D005068 ORTHO05D007561 2.0e-240 836.6 1092 48.1
TWI59G1220 Tripterygium wilfordii HOM05D005068 ORTHO05D007561 2.5e-240 836.3 1073 48.1
VMungo0331G1431 Vigna mungo HOM05D005068 ORTHO05D007561 7.4e-240 834.7 1041 48.8
Cc04_g00890 Coffea canephora HOM05D005068 ORTHO05D007561 9.7e-240 834.3 1041 52.5
PSO339G5314 Papaver somniferum HOM05D005068 ORTHO05D007561 9.7e-240 834.3 1077 48.7
HanXRQChr12g0360151 Helianthus annuus HOM05D005068 ORTHO05D007561 1.3e-239 833.9 1024 49.1
MD17G1151100 Malus domestica HOM05D005068 ORTHO05D007561 2.2e-239 833.2 1057 48.7
Aqoxy1G00349 Aquilegia oxysepala HOM05D005068 ORTHO05D007561 2.8e-239 832.8 1030 48.3
Hund18654 Selenicereus undatus HOM05D005068 ORTHO05D007561 2.8e-239 832.8 1081 46.9
FAN14G5424 Fragaria x ananassa HOM05D005068 ORTHO05D007561 1.1e-238 830.9 1082 48.5
RcHm_v2.0_Chr2g0147011 Rosa chinensis HOM05D005068 ORTHO05D007561 1.4e-238 830.5 1019 50.7
Sp5g27520 Schrenkiella parvula HOM05D005068 ORTHO05D007561 1.4e-238 830.5 916 52.6
FAN05G3041 Fragaria x ananassa HOM05D005068 ORTHO05D007561 1.8e-238 830.1 1054 49.6
Glyma.07G043700 Glycine max HOM05D005068 ORTHO05D007561 3.1e-238 829.3 1080 48.0
MBI13_g01677_MAGBIO Magnolia biondii HOM05D005068 ORTHO05D007561 2.0e-237 826.6 872 54.5
THA.LOC104808063 Tarenaya hassleriana HOM05D005068 ORTHO05D007561 5.9e-237 825.1 930 51.8
ATR0317G028 Amborella trichopoda HOM05D005068 ORTHO05D007561 1.3e-236 823.9 1097 47.7
AL2G32110 Arabidopsis lyrata HOM05D005068 ORTHO05D007561 1.4e-235 820.5 920 51.7
Lalb_Chr04g0253821 Lupinus albus HOM05D005068 ORTHO05D007561 1.2e-234 817.4 1025 49.2
ECA234G0903 Erigeron canadensis HOM05D005068 ORTHO05D007561 2.1e-234 816.6 1024 48.7
AT1G72440 Arabidopsis thaliana HOM05D005068 ORTHO05D007561 4.7e-234 815.5 914 52.0
Medtr4g119670 Medicago truncatula HOM05D005068 ORTHO05D007561 4.7e-234 815.5 1009 49.1
Cfa003490 Carpinus fangiana HOM05D005068 ORTHO05D007561 1.0e-233 814.3 1072 47.8
Nitab4.5_0003981g0040 Nicotiana tabacum HOM05D005068 ORTHO05D007561 8.8e-233 811.2 1016 51.4
Peaxi162Scf00038g02247 Petunia axillaris HOM05D005068 ORTHO05D007561 8.8e-233 811.2 1014 49.6
Psat2g016360 Pisum sativum HOM05D005068 ORTHO05D007561 4.4e-232 808.9 1050 47.7
BcaC08g46695 Brassica carinata HOM05D005068 ORTHO05D007561 2.2e-231 806.6 895 52.2
Nitab4.5_0009947g0020 Nicotiana tabacum HOM05D005068 ORTHO05D007561 2.8e-231 806.2 888 51.9
Oeu000383.1 Olea europaea HOM05D005068 ORTHO05D007561 3.7e-231 805.8 1019 47.9
C06p46800 Brassica napus HOM05D005068 ORTHO05D007561 6.3e-231 805.1 1022 48.4
Thecc.06G127400 Theobroma cacao HOM05D005068 ORTHO05D007561 6.3e-231 805.1 1079 49.4
BolC6t39723H Brassica oleracea HOM05D005068 ORTHO05D007561 1.5e-229 800.4 1031 47.9
MSTRG.22527 Avicennia marina HOM05D005068 ORTHO05D007561 3.5e-229 799.3 1041 47.8
Glyma.16G012100 Glycine max HOM05D005068 ORTHO05D007561 3.5e-229 799.3 1036 50.7
Carub.0002s1929 Capsella rubella HOM05D005068 ORTHO05D007561 4.5e-229 798.9 930 50.9
Cpa.g.sc25.173 Carica papaya HOM05D005068 ORTHO05D007561 4.5e-229 798.9 1085 47.0
Lsat_1_v5_gn_5_136720 Lactuca sativa HOM05D005068 ORTHO05D007561 4.5e-229 798.9 1015 48.1
Sabra01G0128700 Salix brachista HOM05D005068 ORTHO05D007561 4.5e-229 798.9 1049 49.6
Thhalv10018056m.g Eutrema salsugineum HOM05D005068 ORTHO05D007561 2.2e-228 796.6 1042 49.3
FAN09G4827 Fragaria x ananassa HOM05D005068 ORTHO05D007561 3.8e-228 795.8 891 53.3
BcaB03g14995 Brassica carinata HOM05D005068 ORTHO05D007561 6.5e-228 795.0 914 51.0
SalBow6G5915 Salvia bowleyana HOM05D005068 ORTHO05D007561 3.2e-227 792.7 1091 45.6
AUR62009935 Chenopodium quinoa HOM05D005068 ORTHO05D007561 1.2e-226 790.8 1038 47.2
Ca_23422_v3 Cicer arietinum L. HOM05D005068 ORTHO05D007561 2.1e-226 790.0 1083 46.0
AUR62001432 Chenopodium quinoa HOM05D005068 ORTHO05D007561 2.7e-226 789.6 1061 46.8
Ca_30848_v3 Cicer arietinum L. HOM05D005068 ORTHO05D007561 2.7e-226 789.6 890 51.9
Sopen03g041300 Solanum pennellii HOM05D005068 ORTHO05D007561 6.1e-226 788.5 1034 47.4
EL10Ac7g16459 Beta vulgaris HOM05D005068 ORTHO05D007561 8.0e-226 788.1 1087 44.9
CARHR065370 Cardamine hirsuta HOM05D005068 ORTHO05D007561 1.0e-225 787.7 1041 50.9
TPR.G16658 Trifolium pratense HOM05D005068 ORTHO05D007561 4.0e-225 785.8 1093 45.5
Peaxi162Scf00535g00325 Petunia axillaris HOM05D005068 ORTHO05D007561 2.6e-224 783.1 996 48.5
arahy.Tifrunner.gnm1.ann1.X03KN2 Arachis hypogaea HOM05D005068 ORTHO05D007561 2.2e-220 770.0 1062 46.5
Aa31LG4G2770 Aethionema arabicum HOM05D005068 ORTHO05D007561 6.5e-220 768.5 927 48.8
SEGI_35987 Sequoiadendron giganteum HOM05D005068 ORTHO05D007561 8.5e-220 768.1 1077 44.8
ClCG09G001250 Citrullus lanatus HOM05D005068 ORTHO05D007561 1.9e-219 766.9 1038 47.2
DCAR_026429 Daucus carota HOM05D005068 ORTHO05D007561 2.1e-218 763.5 889 50.5
unitig_26.g8921 Utricularia gibba HOM05D005068 ORTHO05D007561 8.0e-218 761.5 1030 46.0
BraA07t31420Z Brassica rapa HOM05D005068 ORTHO05D007561 2.3e-217 760.0 893 50.3
Rhsim08G0242500 Rhododendron simsii HOM05D005068 ORTHO05D007561 3.0e-217 759.6 1015 46.7
Haze_16103 Corylus avellana HOM05D005068 ORTHO05D007561 5.0e-212 742.3 1198 42.4
Lj5A31T61 Lonicera japonica HOM05D005068 ORTHO05D007561 1.8e-209 733.8 876 50.0
Nn8g38536 Nelumbo nucifera HOM05D005068 ORTHO05D007561 5.6e-203 712.2 1046 43.8
vmacro15071 Vaccinium macrocarpon HOM05D005068 ORTHO05D007561 2.4e-198 696.8 867 49.3
Nitab4.5_0007072g0030 Nicotiana tabacum HOM05D005068 ORTHO05D007561 2.3e-196 690.3 814 53.3
SGA_v2.0_scaffold71G23904 Striga asiatica HOM05D005068 ORTHO05D007561 6.8e-193 678.7 1020 45.5
Actinidia21819 Actinidia chinensis HOM05D005068 ORTHO05D007561 2.2e-191 673.7 928 45.3
AagrBONN_evm.TU.Sc2ySwM_228.3616 Anthoceros agrestis HOM05D005068 ORTHO05D007561 3.5e-189 666.4 985 43.1
Pp3c8_7540 Physcomitrium patens HOM05D005068 ORTHO05D007561 1.0e-188 664.8 993 42.9
Mapoly0001s0039 Marchantia polymorpha HOM05D005068 ORTHO05D007561 6.6e-188 662.1 872 46.0
vmacro14086 Vaccinium macrocarpon HOM05D005068 ORTHO05D007561 3.5e-181 639.8 629 56.1
SHI38508 Sapria himalayana HOM05D005068 ORTHO05D007561 3.4e-176 623.2 820 47.2
COL.COLO4_30833 Corchorus olitorius HOM05D005068 ORTHO05D007561 4.3e-171 606.3 587 57.6
TAR383G0209 Trochodendron aralioides HOM05D005068 ORTHO05D007561 2.1e-170 604.0 690 51.7
FAN02G4153 Fragaria x ananassa HOM05D005068 ORTHO05D007561 2.4e-166 590.5 614 56.2
Migut.I01119 Erythranthe guttata HOM05D005068 ORTHO05D007561 2.4e-150 537.3 1053 38.2
CBR_g4353 Chara braunii HOM05D005068 ORTHO05D007561 5.5e-150 536.2 938 38.1
CDE11G1047 Ceratophyllum demersum HOM05D005068 ORTHO05D007561 1.2e-144 518.5 630 51.3
A07p38620 Brassica napus HOM05D005068 ORTHO05D007561 4.5e-144 516.5 552 53.4
SMO356G0436 Selaginella moellendorffii HOM05D005068 ORTHO05D007561 4.8e-138 496.5 858 36.7
ECA234G3781 Erigeron canadensis HOM05D005068 ORTHO05D007561 1.6e-133 481.5 865 37.6
Dinv37834 Davidia involucrata HOM05D005068 ORTHO05D007561 1.6e-130 471.5 508 53.0
Sc12g0010810 Simmondsia chinensis HOM05D005068 ORTHO05D007561 1.4e-124 451.8 738 43.4
PGSC0003DMG400009145 Solanum tuberosum HOM05D005068 ORTHO05D007561 5.3e-121 439.9 581 47.0
Cre10.g459600 Chlamydomonas reinhardtii HOM05D005068 ORTHO05D007561 1.5e-107 395.2 1016 33.5
Dinv37835 Davidia involucrata HOM05D005068 ORTHO05D007561 6.8e-100 369.8 357 56.9
CDE11G0362 Ceratophyllum demersum HOM05D005068 ORTHO05D007561 3.6e-93 347.4 366 54.9
PRCOL_00007240 Prasinoderma coloniale HOM05D005068 ORTHO05D007561 1.4e-81 308.9 833 32.7
Cfa026526 Carpinus fangiana HOM05D005068 ORTHO05D007561 2.2e-74 285.0 725 31.2
SHI25215 Sapria himalayana HOM05D005068 ORTHO05D007561 3.5e-72 277.7 389 42.7
Haze_25369 Corylus avellana HOM05D005068 ORTHO05D007561 1.6e-61 242.3 620 31.9
TAR383G0400 Trochodendron aralioides HOM05D005068 ORTHO05D007561 1.8e-60 238.8 294 47.6
Cc00_g06320 Coffea canephora HOM05D005068 ORTHO05D007561 2.2e-50 205.3 211 57.3
Psat7g194920 Pisum sativum HOM05D005068 ORTHO05D030493 4.8e-45 187.6 211 53.1
FAN23G2170 Fragaria x ananassa HOM05D005068 ORTHO05D007561 2.2e-42 178.7 191 55.5
Zm00001eb239840 Zea mays HOM05D001561 ORTHO05D001715 2.7e-40 171.8 146 64.4
MSTRG.13912 Avicennia marina HOM05D005068 ORTHO05D019833 4.2e-33 147.9 102 69.6
vmacro14085 Vaccinium macrocarpon HOM05D005068 ORTHO05D007561 1.9e-30 139.0 237 41.8
Hund18058 Selenicereus undatus HOM05D005068 ORTHO05D030493 3.4e-27 128.3 172 46.5
Psat7g194960 Pisum sativum HOM05D005068 ORTHO05D030493 1.9e-25 122.5 167 46.7
Psat4g066440 Pisum sativum HOM05D005068 ORTHO05D030493 3.5e-24 118.2 81 69.1
HanXRQChr04g0122031 Helianthus annuus HOM05D005068 ORTHO05D007561 8.7e-23 113.6 132 50.0
Zm00001eb363000 Zea mays HOM05D001561 ORTHO05D002967 1.3e-15 89.7 52 82.7
ECA233G2064 Erigeron canadensis HOM05D005068 ORTHO05D007561 9.7e-14 83.6 81 50.6
COL.COLO4_30832 Corchorus olitorius HOM05D005068 ORTHO05D014954 1.3e-13 83.2 75 60.0
Sc16g0005100 Simmondsia chinensis HOM05D005068 ORTHO05D014954 1.3e-13 83.2 62 66.1
Lj5C31T11 Lonicera japonica HOM05D005068 ORTHO05D019833 1.6e-08 66.2 233 29.6
Sc16g0005210 Simmondsia chinensis HOM05D005068 ORTHO05D019833 1.8e-07 62.8 219 27.4


User provided reference genes

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