Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb007930 Zea mays HOM05D007089 ORTHO05D008959 2.4e-232 808.5 419 100.0
Os03g0198900 Oryza sativa ssp. japonica HOM05D007089 ORTHO05D008959 2.4e-152 542.7 420 66.2
HPP92_020401 Vanilla planifolia HOM05D007089 ORTHO05D008959 3.7e-108 396.0 419 48.9
Gorai.010G011900 Gossypium raimondii HOM05D007089 ORTHO05D008959 6.9e-107 391.7 416 46.6
COL.COLO4_26368 Corchorus olitorius HOM05D007089 ORTHO05D008959 5.9e-106 388.7 419 46.5
Gohir.D06G009100 Gossypium hirsutum HOM05D007089 ORTHO05D008959 1.0e-105 387.9 416 46.4
Atru.chr13.537 Acer truncatum HOM05D007089 ORTHO05D008959 3.8e-105 386.0 412 47.6
Ciclev10001360m.g Citrus clementina HOM05D007089 ORTHO05D008959 5.0e-105 385.6 411 47.9
Lj4A43T59 Lonicera japonica HOM05D007089 ORTHO05D008959 5.0e-105 385.6 428 47.0
Prupe.1G383100 Prunus persica HOM05D007089 ORTHO05D008959 8.5e-105 384.8 417 47.5
Hma1.2p1_0203F.1_g086680 Hydrangea macrophylla HOM05D007089 ORTHO05D008959 1.1e-104 384.4 428 46.3
TAR381G0661 Trochodendron aralioides HOM05D007089 ORTHO05D008959 1.1e-104 384.4 429 51.7
Gohir.A06G011700 Gossypium hirsutum HOM05D007089 ORTHO05D008959 1.4e-104 384.0 416 46.4
Nn1g05102 Nelumbo nucifera HOM05D007089 ORTHO05D008959 5.5e-104 382.1 416 49.5
PSO700G0257 Papaver somniferum HOM05D007089 ORTHO05D008959 5.5e-104 382.1 427 48.9
PSO170G0803 Papaver somniferum HOM05D007089 ORTHO05D008959 1.2e-103 380.9 429 48.7
Cfa018438 Carpinus fangiana HOM05D007089 ORTHO05D008959 1.6e-103 380.6 419 46.3
Aqoxy5G01701 Aquilegia oxysepala HOM05D007089 ORTHO05D008959 1.8e-102 377.1 422 46.0
PSO832G2704 Papaver somniferum HOM05D007089 ORTHO05D008959 1.8e-102 377.1 427 48.7
CiPaw.09G208600 Carya illinoinensis HOM05D007089 ORTHO05D008959 2.3e-102 376.7 421 47.0
GSVIVG01009652001 Vitis vinifera HOM05D007089 ORTHO05D008959 6.7e-102 375.2 421 48.0
CANSAT25G1057 Cannabis sativa HOM05D007089 ORTHO05D008959 8.7e-102 374.8 427 45.2
Eucgr.F01540 Eucalyptus grandis HOM05D007089 ORTHO05D008959 2.5e-101 373.2 421 47.0
AL1G31930 Arabidopsis lyrata HOM05D007089 ORTHO05D008959 4.3e-101 372.5 416 44.5
Potri.014G041400 Populus trichocarpa HOM05D007089 ORTHO05D008959 1.7e-100 370.5 413 47.2
Sp1g17250 Schrenkiella parvula HOM05D007089 ORTHO05D008959 3.7e-100 369.4 419 44.9
HanXRQChr14g0437051 Helianthus annuus HOM05D007089 ORTHO05D008959 6.3e-100 368.6 416 47.1
AT1G19340 Arabidopsis thaliana HOM05D007089 ORTHO05D008959 1.8e-99 367.1 421 44.9
BraA06t24662Z Brassica rapa HOM05D007089 ORTHO05D008959 1.8e-99 367.1 416 44.2
Migut.N00515 Erythranthe guttata HOM05D007089 ORTHO05D008959 3.1e-99 366.3 423 43.7
BolC5t30479H Brassica oleracea HOM05D007089 ORTHO05D008959 4.1e-99 365.9 422 44.1
Nitab4.5_0005314g0050 Nicotiana tabacum HOM05D007089 ORTHO05D008959 5.3e-99 365.5 423 44.4
ATR0733G253 Amborella trichopoda HOM05D007089 ORTHO05D008959 1.2e-98 364.4 433 44.6
Manes.05G163100 Manihot esculenta HOM05D007089 ORTHO05D008959 1.2e-98 364.4 427 45.4
A06p15500 Brassica napus HOM05D007089 ORTHO05D008959 3.4e-98 362.8 417 44.4
Sc02g0006440 Simmondsia chinensis HOM05D007089 ORTHO05D008959 3.4e-98 362.8 426 47.2
Aa31LG7G4040 Aethionema arabicum HOM05D007089 ORTHO05D008959 1.3e-97 360.9 412 46.4
MSTRG.22295 Avicennia marina HOM05D007089 ORTHO05D008959 2.2e-97 360.1 418 45.5
Carub.0001s1893 Capsella rubella HOM05D007089 ORTHO05D008959 5.0e-97 359.0 391 46.0
PGSC0003DMG400027847 Solanum tuberosum HOM05D007089 ORTHO05D008959 5.0e-97 359.0 415 45.1
C05p17740 Brassica napus HOM05D007089 ORTHO05D008959 1.4e-96 357.5 416 44.0
CAN.G1126.18 Capsicum annuum HOM05D007089 ORTHO05D008959 1.9e-96 357.1 426 45.5
ClCG08G015310 Citrullus lanatus HOM05D007089 ORTHO05D008959 3.2e-96 356.3 422 44.8
SGA_v2.0_scaffold33G13513 Striga asiatica HOM05D007089 ORTHO05D008959 3.2e-96 356.3 431 44.3
CSS0000683 Camellia sinensis var. sinensis HOM05D007089 ORTHO05D008959 5.5e-96 355.5 426 43.9
Cpa.g.sc64.54 Carica papaya HOM05D007089 ORTHO05D008959 1.2e-95 354.4 286 58.0
Sopen04g033530 Solanum pennellii HOM05D007089 ORTHO05D008959 1.2e-95 354.4 415 44.3
Peaxi162Scf00057g00723 Petunia axillaris HOM05D007089 ORTHO05D008959 2.1e-95 353.6 421 45.1
Oeu015592.2 Olea europaea HOM05D007089 ORTHO05D008959 6.1e-95 352.1 445 44.7
Thhalv10007768m.g Eutrema salsugineum HOM05D007089 ORTHO05D008959 1.0e-94 351.3 418 44.3
Ah.08g217460 Amaranthus hybridus HOM05D007089 ORTHO05D008959 1.4e-94 350.9 438 41.8
THA.LOC104809053 Tarenaya hassleriana HOM05D007089 ORTHO05D008959 8.8e-94 348.2 391 48.1
BcaB07g31960 Brassica carinata HOM05D007089 ORTHO05D008959 1.5e-93 347.4 416 44.0
Lalb_Chr14g0369091 Lupinus albus HOM05D007089 ORTHO05D008959 4.4e-93 345.9 423 43.3
TPR.G15730 Trifolium pratense HOM05D007089 ORTHO05D008959 9.7e-93 344.7 430 44.2
PGR083G0581 Punica granatum HOM05D007089 ORTHO05D008959 1.3e-92 344.4 415 44.6
Glyma.14G077000 Glycine max HOM05D007089 ORTHO05D008959 2.2e-92 343.6 429 43.1
SalBow8G1187 Salvia bowleyana HOM05D007089 ORTHO05D008959 2.2e-92 343.6 440 41.8
SalBow8G1554 Salvia bowleyana HOM05D007089 ORTHO05D008959 2.2e-92 343.6 440 41.8
MD04G1062700 Malus domestica HOM05D007089 ORTHO05D008959 6.3e-92 342.0 420 45.7
FvH4_2g40230 Fragaria vesca HOM05D007089 ORTHO05D008959 2.4e-91 340.1 418 45.0
RcHm_v2.0_Chr6g0300531 Rosa chinensis HOM05D007089 ORTHO05D008959 4.1e-91 339.3 414 44.7
Rhsim07G0236000 Rhododendron simsii HOM05D007089 ORTHO05D008959 2.0e-90 337.0 472 41.7
AUR62025603 Chenopodium quinoa HOM05D007089 ORTHO05D008959 2.6e-90 336.7 434 41.7
Ca_13340_v3 Cicer arietinum L. HOM05D007089 ORTHO05D008959 2.6e-90 336.7 456 41.7
Cc10_g03320 Coffea canephora HOM05D007089 ORTHO05D008959 3.4e-90 336.3 426 43.7
Haze_17627 Corylus avellana HOM05D007089 ORTHO05D008959 4.5e-90 335.9 423 42.6
Medtr1g021985 Medicago truncatula HOM05D007089 ORTHO05D008959 4.5e-90 335.9 424 42.5
arahy.Tifrunner.gnm1.ann1.4B2PQ4 Arachis hypogaea HOM05D007089 ORTHO05D008959 1.0e-89 334.7 428 43.7
CARHR019930 Cardamine hirsuta HOM05D007089 ORTHO05D008959 1.0e-89 334.7 301 51.8
FAN15G3100 Fragaria x ananassa HOM05D007089 ORTHO05D008959 1.7e-89 334.0 426 44.6
Psat6g006920 Pisum sativum HOM05D007089 ORTHO05D008959 5.0e-89 332.4 428 43.7
Solyc04g079950.4 Solanum lycopersicum HOM05D007089 ORTHO05D008959 9.4e-88 328.2 400 44.5
vmacro04507 Vaccinium macrocarpon HOM05D007089 ORTHO05D008959 1.4e-86 324.3 436 42.4
Duzib041G0709 Durio zibethinus HOM05D007089 ORTHO05D008959 1.8e-86 323.9 415 41.0
VMungo0647G2017 Vigna mungo HOM05D007089 ORTHO05D008959 3.9e-86 322.8 427 43.8
MBI16_g26378_MAGBIO Magnolia biondii HOM05D007089 ORTHO05D008959 8.2e-84 315.1 444 41.7
unitig_8.g3115 Utricularia gibba HOM05D007089 ORTHO05D008959 3.1e-83 313.2 401 42.4
QL02p007525 Quercus lobata HOM05D007089 ORTHO05D008959 4.5e-82 309.3 542 36.0
Sabra14G0030300 Salix brachista HOM05D007089 ORTHO05D008959 4.5e-82 309.3 369 44.2
AUR62001387 Chenopodium quinoa HOM05D007089 ORTHO05D008959 1.5e-80 304.3 444 39.6
arahy.Tifrunner.gnm1.ann1.K9WZZ6 Arachis hypogaea HOM05D007089 ORTHO05D008959 2.5e-80 303.5 428 41.6
DCAR_008774 Daucus carota HOM05D007089 ORTHO05D008959 5.5e-80 302.4 374 43.0
Mapoly0005s0290 Marchantia polymorpha HOM05D007089 ORTHO05D008959 1.5e-77 294.3 435 40.0
Nitab4.5_0000110g0230 Nicotiana tabacum HOM05D007089 ORTHO05D008959 3.7e-76 289.7 376 41.8
EL10Ac7g18245 Beta vulgaris HOM05D007089 ORTHO05D008959 3.1e-75 286.6 442 39.1
Lsat_1_v5_gn_5_30021 Lactuca sativa HOM05D007089 ORTHO05D008959 3.5e-74 283.1 372 48.1
Pp3c10_21330 Physcomitrium patens HOM05D007089 ORTHO05D008959 3.8e-73 279.6 290 48.3
Phvul.001G016200 Phaseolus vulgaris HOM05D007089 ORTHO05D008959 3.0e-70 270.0 383 41.0
CDE02G1565 Ceratophyllum demersum HOM05D007089 ORTHO05D008959 1.2e-69 268.1 404 41.3
CsaV3_2G028500 Cucumis sativus L. HOM05D007089 ORTHO05D008959 4.4e-69 266.2 337 42.7
ECA246G5250 Erigeron canadensis HOM05D007089 ORTHO05D008959 5.7e-69 265.8 350 41.4
SEGI_17198 Sequoiadendron giganteum HOM05D007089 ORTHO05D008959 2.2e-68 263.8 427 37.0
SEGI_08195 Sequoiadendron giganteum HOM05D007089 ORTHO05D008959 4.0e-62 243.0 357 38.9
Lj5g0009638 Lotus japonicus HOM05D007089 ORTHO05D008959 1.2e-61 241.5 354 41.0
SMO358G0064 Selaginella moellendorffii HOM05D007089 ORTHO05D008959 5.2e-54 216.1 189 54.0
Actinidia29839 Actinidia chinensis HOM05D007089 ORTHO05D008959 2.0e-53 214.2 337 38.6
Actinidia38023 Actinidia chinensis HOM05D007089 ORTHO05D008959 4.6e-50 203.0 270 43.3
BcaNung07258 Brassica carinata HOM05D000817 ORTHO05D008959 1.3e-49 201.4 157 56.1
FAN20G0063 Fragaria x ananassa HOM05D007089 ORTHO05D008959 7.3e-48 195.7 341 37.2
CBR_g34449 Chara braunii HOM05D007089 ORTHO05D008959 1.2e-47 194.9 393 31.6
AagrBONN_evm.TU.Sc2ySwM_228.1009 Anthoceros agrestis HOM05D007089 ORTHO05D008959 1.1e-40 171.8 187 46.5
Thecc.01G286100 Theobroma cacao HOM05D007089 ORTHO05D008959 1.7e-25 121.3 223 35.0
MELO3C010924.2 Cucumis melo HOM05D007089 ORTHO05D008959 7.1e-19 99.4 227 32.2
Glyma.17G248801 Glycine max HOM05D007089 ORTHO05D008959 1.3e-15 88.6 77 49.4
Sed0025576 Sechium edule HOM05D007089 ORTHO05D008959 8.1e-15 85.9 75 50.7
FAN27G0845 Fragaria x ananassa HOM05D007089 ORTHO05D008959 2.7e-10 70.9 157 34.4
Cfa025491 Carpinus fangiana HOM05D007089 ORTHO05D008959 6.0e-10 69.7 240 26.2


User provided reference genes

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