Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb007240 Zea mays HOM05D004197 ORTHO05D004975 7.3e-46 186.8 91 100.0
Zm00001eb400580 Zea mays HOM05D004197 ORTHO05D004975 8.1e-45 183.3 91 98.9
Os03g0207250 Oryza sativa ssp. japonica HOM05D004197 ORTHO05D004975 1.4e-44 182.6 91 97.8
CSS0039414 Camellia sinensis var. sinensis HOM05D004197 ORTHO05D004975 3.7e-37 157.9 91 82.4
CSS0047181 Camellia sinensis var. sinensis HOM05D004197 ORTHO05D004975 3.7e-37 157.9 91 82.4
PGR142G4086 Punica granatum HOM05D004197 ORTHO05D004975 4.8e-37 157.5 91 83.5
THA.LOC104804007 Tarenaya hassleriana HOM05D004197 ORTHO05D004975 4.8e-37 157.5 91 80.2
Ca_23424_v3 Cicer arietinum L. HOM05D004197 ORTHO05D004975 1.1e-36 156.4 89 80.9
TPR.G16667 Trifolium pratense HOM05D004197 ORTHO05D004975 1.1e-36 156.4 89 80.9
Psat1g223520 Pisum sativum HOM05D004197 ORTHO05D004975 2.4e-36 155.2 89 78.7
Gorai.004G083000 Gossypium raimondii HOM05D004197 ORTHO05D004975 3.1e-36 154.8 91 80.2
Medtr8g022770 Medicago truncatula HOM05D004197 ORTHO05D004975 4.0e-36 154.5 89 79.8
Psat4g166320 Pisum sativum HOM05D004197 ORTHO05D004975 4.0e-36 154.5 91 76.9
Atru.chr12.1293 Acer truncatum HOM05D004197 ORTHO05D004975 5.3e-36 154.1 91 76.9
MBI11_g23942_MAGBIO Magnolia biondii HOM05D004197 ORTHO05D004975 5.3e-36 154.1 91 78.0
Phvul.003G238300 Phaseolus vulgaris HOM05D004197 ORTHO05D004975 5.3e-36 154.1 89 79.8
Duzib151G0052 Durio zibethinus HOM05D004197 ORTHO05D004975 6.9e-36 153.7 91 78.0
Gohir.A10G143100 Gossypium hirsutum HOM05D004197 ORTHO05D004975 6.9e-36 153.7 91 79.1
Gorai.011G136700 Gossypium raimondii HOM05D004197 ORTHO05D004975 6.9e-36 153.7 91 79.1
Gorai.012G053000 Gossypium raimondii HOM05D004197 ORTHO05D004975 6.9e-36 153.7 91 79.1
Ah.13g073520 Amaranthus hybridus HOM05D004197 ORTHO05D004975 9.0e-36 153.3 91 78.0
CiPaw.11G096400 Carya illinoinensis HOM05D004197 ORTHO05D004975 9.0e-36 153.3 91 76.9
RcHm_v2.0_Chr1g0333831 Rosa chinensis HOM05D004197 ORTHO05D004975 9.0e-36 153.3 91 80.2
Atru.chr12.1301 Acer truncatum HOM05D004197 ORTHO05D004975 1.2e-35 152.9 91 75.8
AL5G41720 Arabidopsis lyrata HOM05D004197 ORTHO05D004975 1.2e-35 152.9 91 81.3
Carub.0005s2637 Capsella rubella HOM05D004197 ORTHO05D004975 1.2e-35 152.9 91 81.3
CiPaw.12G066300 Carya illinoinensis HOM05D004197 ORTHO05D004975 1.2e-35 152.9 91 75.8
Ca_10539_v3 Cicer arietinum L. HOM05D004197 ORTHO05D004975 1.2e-35 152.9 89 78.7
FvH4_7g06200 Fragaria vesca HOM05D004197 ORTHO05D004975 1.2e-35 152.9 91 79.1
FAN01G1948 Fragaria x ananassa HOM05D004197 ORTHO05D004975 1.2e-35 152.9 91 79.1
FAN06G1493 Fragaria x ananassa HOM05D004197 ORTHO05D004975 1.2e-35 152.9 91 79.1
Glyma.05G102000 Glycine max HOM05D004197 ORTHO05D004975 1.2e-35 152.9 89 79.8
Hma1.2p1_0307F.1_g119895 Hydrangea macrophylla HOM05D004197 ORTHO05D004975 1.2e-35 152.9 91 78.0
Lalb_Chr10g0101191 Lupinus albus HOM05D004197 ORTHO05D004975 1.2e-35 152.9 91 76.9
Prupe.1G206900 Prunus persica HOM05D004197 ORTHO05D004975 1.2e-35 152.9 91 78.0
AT3G59650 Arabidopsis thaliana HOM05D004197 ORTHO05D004975 1.5e-35 152.5 91 80.2
Aa31LG10G13940 Aethionema arabicum HOM05D004197 ORTHO05D004975 2.0e-35 152.1 91 80.2
Gohir.A05G367700 Gossypium hirsutum HOM05D004197 ORTHO05D004975 2.0e-35 152.1 91 78.0
Gohir.D10G075200 Gossypium hirsutum HOM05D004197 ORTHO05D004975 2.0e-35 152.1 91 78.0
QL10p055721 Quercus lobata HOM05D004197 ORTHO05D004975 2.0e-35 152.1 89 78.7
Thecc.04G166300 Theobroma cacao HOM05D004197 ORTHO05D004975 2.0e-35 152.1 91 76.9
CARHR170020 Cardamine hirsuta HOM05D004197 ORTHO05D004975 2.6e-35 151.8 91 80.2
FAN03G3355 Fragaria x ananassa HOM05D004197 ORTHO05D004975 2.6e-35 151.8 91 78.0
Gohir.D10G123800 Gossypium hirsutum HOM05D004197 ORTHO05D004975 2.6e-35 151.8 91 78.0
Lj1g0017974 Lotus japonicus HOM05D004197 ORTHO05D004975 2.6e-35 151.8 86 79.1
Lalb_Chr04g0253841 Lupinus albus HOM05D004197 ORTHO05D004975 2.6e-35 151.8 91 78.0
Ciclev10022904m.g Citrus clementina HOM05D004197 ORTHO05D004975 3.4e-35 151.4 91 78.0
Gohir.D04G047600 Gossypium hirsutum HOM05D004197 ORTHO05D004975 3.4e-35 151.4 91 78.0
VMungo0251G3068 Vigna mungo HOM05D004197 ORTHO05D004975 3.4e-35 151.4 89 78.7
Cpa.g.sc10.180 Carica papaya HOM05D004197 ORTHO05D004975 4.5e-35 151.0 91 75.8
Duzib212G0574 Durio zibethinus HOM05D004197 ORTHO05D004975 4.5e-35 151.0 91 76.9
Glyma.17G164900 Glycine max HOM05D004197 ORTHO05D004975 4.5e-35 151.0 89 77.5
Atru.chr4.2919 Acer truncatum HOM05D004197 ORTHO05D004975 5.8e-35 150.6 91 73.6
Gohir.D02G135200 Gossypium hirsutum HOM05D004197 ORTHO05D004975 5.8e-35 150.6 91 78.0
Rhsim03G0176800 Rhododendron simsii HOM05D004197 ORTHO05D004975 5.8e-35 150.6 89 77.5
TWI32G1250 Tripterygium wilfordii HOM05D004197 ORTHO05D004975 5.8e-35 150.6 91 75.8
GSVIVG01038138001 Vitis vinifera HOM05D004197 ORTHO05D004975 5.8e-35 150.6 91 74.7
Dinv33200 Davidia involucrata HOM05D004197 ORTHO05D004975 7.6e-35 150.2 88 77.3
arahy.Tifrunner.gnm1.ann1.4JR04K Arachis hypogaea HOM05D004197 ORTHO05D004975 9.9e-35 149.8 91 75.8
arahy.Tifrunner.gnm1.ann1.5DCW4K Arachis hypogaea HOM05D004197 ORTHO05D004975 9.9e-35 149.8 91 75.8
CDE02G1869 Ceratophyllum demersum HOM05D004197 ORTHO05D004975 9.9e-35 149.8 89 77.5
Nn1g09691 Nelumbo nucifera HOM05D004197 ORTHO05D004975 9.9e-35 149.8 91 74.7
QL04p073242 Quercus lobata HOM05D004197 ORTHO05D004975 9.9e-35 149.8 89 75.3
HPP92_007604 Vanilla planifolia HOM05D004197 ORTHO05D004975 9.9e-35 149.8 91 75.8
arahy.Tifrunner.gnm1.ann1.E9H45Q Arachis hypogaea HOM05D004197 ORTHO05D004975 1.3e-34 149.4 89 76.4
Eucgr.G02225 Eucalyptus grandis HOM05D004197 ORTHO05D004975 1.3e-34 149.4 91 75.8
Thhalv10006316m.g Eutrema salsugineum HOM05D004197 ORTHO05D004975 1.3e-34 149.4 91 80.2
TWI34G1638 Tripterygium wilfordii HOM05D004197 ORTHO05D004975 1.3e-34 149.4 91 76.9
Cfa015042 Carpinus fangiana HOM05D004197 ORTHO05D004975 2.2e-34 148.7 91 74.7
Cc02_g26370 Coffea canephora HOM05D004197 ORTHO05D004975 2.2e-34 148.7 91 80.2
Gohir.D08G078000 Gossypium hirsutum HOM05D004197 ORTHO05D004975 2.2e-34 148.7 91 76.9
Sp5g03530 Schrenkiella parvula HOM05D004197 ORTHO05D004975 2.2e-34 148.7 91 79.1
EL10Ac6g15364 Beta vulgaris HOM05D004197 ORTHO05D004975 3.8e-34 147.9 91 76.9
Atru.chr12.1273 Acer truncatum HOM05D004197 ORTHO05D004975 4.9e-34 147.5 91 73.6
BcaC07g40496 Brassica carinata HOM05D004197 ORTHO05D004975 4.9e-34 147.5 91 78.0
A09p51920 Brassica napus HOM05D004197 ORTHO05D004975 4.9e-34 147.5 91 78.0
C08p34650 Brassica napus HOM05D004197 ORTHO05D004975 4.9e-34 147.5 91 78.0
BolC8t51067H Brassica oleracea HOM05D004197 ORTHO05D004975 4.9e-34 147.5 91 78.0
BraA09t40628Z Brassica rapa HOM05D004197 ORTHO05D004975 4.9e-34 147.5 91 78.0
ATR0733G162 Amborella trichopoda HOM05D004197 ORTHO05D004975 6.4e-34 147.1 91 74.7
MSTRG.27564 Avicennia marina HOM05D004197 ORTHO05D004975 6.4e-34 147.1 91 79.1
BcaC08g44998 Brassica carinata HOM05D004197 ORTHO05D004975 6.4e-34 147.1 91 78.0
A07p24720 Brassica napus HOM05D000455 ORTHO05D000434 6.4e-34 147.1 91 78.0
C06p26290 Brassica napus HOM05D000455 ORTHO05D000434 6.4e-34 147.1 91 78.0
BolC6t37793H Brassica oleracea HOM05D004197 ORTHO05D004975 6.4e-34 147.1 91 78.0
BraA07t30117Z Brassica rapa HOM05D004197 ORTHO05D004975 6.4e-34 147.1 91 78.0
Gorai.011G081000 Gossypium raimondii HOM05D004197 ORTHO05D004975 6.4e-34 147.1 91 76.9
BcaB02g07455 Brassica carinata HOM05D004197 ORTHO05D004975 8.4e-34 146.7 91 78.0
Lsat_1_v5_gn_6_33001 Lactuca sativa HOM05D004197 ORTHO05D004975 8.4e-34 146.7 91 79.1
CAN.G525.23 Capsicum annuum HOM05D004197 ORTHO05D004975 1.4e-33 146.0 91 78.0
Aqoxy7G00569 Aquilegia oxysepala HOM05D004197 ORTHO05D004975 1.9e-33 145.6 91 73.6
Rhsim02G0084000 Rhododendron simsii HOM05D004197 ORTHO05D004975 1.9e-33 145.6 85 78.8
Solyc04g014390.3 Solanum lycopersicum HOM05D004197 ORTHO05D004975 1.9e-33 145.6 91 76.9
Sopen04g006520 Solanum pennellii HOM05D004197 ORTHO05D004975 1.9e-33 145.6 91 76.9
EL10Ac3g06082 Beta vulgaris HOM05D004197 ORTHO05D004975 2.4e-33 145.2 91 73.6
ClCG07G015230 Citrullus lanatus HOM05D004197 ORTHO05D004975 2.4e-33 145.2 91 75.8
Nitab4.5_0007872g0010 Nicotiana tabacum HOM05D004197 ORTHO05D004975 2.4e-33 145.2 91 76.9
AUR62002389 Chenopodium quinoa HOM05D004197 ORTHO05D004975 3.2e-33 144.8 91 71.4
Gorai.005G151300 Gossypium raimondii HOM05D004197 ORTHO05D004975 3.2e-33 144.8 91 73.6
AUR62023799 Chenopodium quinoa HOM05D004197 ORTHO05D004975 5.5e-33 144.1 91 71.4
MD08G1230600 Malus domestica HOM05D004197 ORTHO05D004975 5.5e-33 144.1 91 72.5
ECA240G1468 Erigeron canadensis HOM05D004197 ORTHO05D004975 9.3e-33 143.3 91 75.8
Oeu016610.1 Olea europaea HOM05D004197 ORTHO05D004975 9.3e-33 143.3 91 74.7
Cc03_g14030 Coffea canephora HOM05D004197 ORTHO05D004975 1.2e-32 142.9 91 78.0
Nitab4.5_0000902g0310 Nicotiana tabacum HOM05D004197 ORTHO05D004975 1.2e-32 142.9 91 75.8
Sed0002539 Sechium edule HOM05D004197 ORTHO05D004975 1.2e-32 142.9 91 74.7
MELO3C017759.2 Cucumis melo HOM05D004197 ORTHO05D004975 1.6e-32 142.5 91 75.8
Lsat_1_v5_gn_5_190681 Lactuca sativa HOM05D004197 ORTHO05D004975 1.6e-32 142.5 91 78.0
Peaxi162Scf00196g00222 Petunia axillaris HOM05D004197 ORTHO05D004975 1.6e-32 142.5 91 74.7
Migut.F01587 Erythranthe guttata HOM05D004197 ORTHO05D004975 2.1e-32 142.1 91 76.9
HanXRQChr10g0286001 Helianthus annuus HOM05D004197 ORTHO05D004975 2.7e-32 141.7 91 75.8
Manes.06G021100 Manihot esculenta HOM05D004197 ORTHO05D004975 2.7e-32 141.7 91 73.6
Sp2g07880 Schrenkiella parvula HOM05D004197 ORTHO05D004975 2.7e-32 141.7 91 76.9
Hund04335 Selenicereus undatus HOM05D004197 ORTHO05D004975 2.7e-32 141.7 91 72.5
PGSC0003DMG401023624 Solanum tuberosum HOM05D004197 ORTHO05D004975 2.7e-32 141.7 91 75.8
CsaV3_4G002820 Cucumis sativus L. HOM05D004197 ORTHO05D004975 4.6e-32 141.0 91 72.5
DCAR_029674 Daucus carota HOM05D004197 ORTHO05D004975 7.9e-32 140.2 91 73.6
HanXRQChr09g0264591 Helianthus annuus HOM05D004197 ORTHO05D004975 7.9e-32 140.2 91 73.6
PSO832G1844 Papaver somniferum HOM05D004197 ORTHO05D004975 7.9e-32 140.2 89 75.3
SalBow6G6028 Salvia bowleyana HOM05D004197 ORTHO05D004975 1.0e-31 139.8 90 74.4
ECA247G1539 Erigeron canadensis HOM05D004197 ORTHO05D004975 1.8e-31 139.0 91 75.8
CANSAT80G2644 Cannabis sativa HOM05D004197 ORTHO05D004975 2.3e-31 138.7 91 72.5
DCAR_009572 Daucus carota HOM05D004197 ORTHO05D004975 2.3e-31 138.7 91 73.6
PSO017G5565 Papaver somniferum HOM05D004197 ORTHO05D004975 2.3e-31 138.7 89 74.2
PSO675G0737 Papaver somniferum HOM05D004197 ORTHO05D004975 2.3e-31 138.7 89 74.2
TAR362G0244 Trochodendron aralioides HOM05D000090 ORTHO05D001584 3.9e-31 137.9 82 78.0
Phvul.010G124900 Phaseolus vulgaris HOM05D004197 ORTHO05D004975 5.1e-31 137.5 82 78.0
TAR629G0957 Trochodendron aralioides HOM05D004197 ORTHO05D004975 6.7e-31 137.1 90 73.3
CARHR099320 Cardamine hirsuta HOM05D004197 ORTHO05D004975 8.7e-31 136.7 83 78.3
Potri.013G126200 Populus trichocarpa HOM05D004197 ORTHO05D004975 1.1e-30 136.3 91 70.3
FvH4_2g13530 Fragaria vesca HOM05D004197 ORTHO05D004975 1.5e-30 136.0 83 78.3
unitig_899.g14470 Utricularia gibba HOM05D004197 ORTHO05D004975 1.5e-30 136.0 91 73.6
PSO591G0183 Papaver somniferum HOM05D004197 ORTHO05D004975 1.9e-30 135.6 89 73.0
arahy.Tifrunner.gnm1.ann1.XY21PC Arachis hypogaea HOM05D004197 ORTHO05D004975 2.5e-30 135.2 91 69.2
CDE09G0571 Ceratophyllum demersum HOM05D004197 ORTHO05D004975 2.5e-30 135.2 81 79.0
SalBow2G3321 Salvia bowleyana HOM05D004197 ORTHO05D004975 4.3e-30 134.4 90 72.2
TPR.G31074 Trifolium pratense HOM05D004197 ORTHO05D006502 5.6e-30 134.0 92 68.5
FAN24G1973 Fragaria x ananassa HOM05D004197 ORTHO05D004975 2.8e-29 131.7 81 77.8
Actinidia11444 Actinidia chinensis HOM05D005056 ORTHO05D006487 3.7e-29 131.3 81 74.1
QL04p093649 Quercus lobata HOM05D004197 ORTHO05D004975 6.2e-29 130.6 82 70.7
Gohir.D08G220700 Gossypium hirsutum HOM05D004197 ORTHO05D004975 8.2e-29 130.2 76 80.3
arahy.Tifrunner.gnm1.ann1.60591L Arachis hypogaea HOM05D004197 ORTHO05D004975 1.8e-28 129.0 98 65.3
Mapoly0027s0066 Marchantia polymorpha HOM05D004197 ORTHO05D004975 1.3e-26 122.9 91 67.0
SGA_v2.0_scaffold49G18240 Striga asiatica HOM05D004197 ORTHO05D004975 1.3e-26 122.9 81 72.8
Lj3g0000340 Lotus japonicus HOM05D004197 ORTHO05D004975 1.9e-25 119.0 89 66.3
TAR493G0004 Trochodendron aralioides HOM05D004197 ORTHO05D004975 7.1e-25 117.1 77 75.3
Sabra13G0105500 Salix brachista HOM05D004197 ORTHO05D004975 3.9e-23 111.3 91 63.7
Pp3c1_20100 Physcomitrium patens HOM05D004197 ORTHO05D004975 8.7e-23 110.2 86 62.8
Glyma.07G044001 Glycine max HOM05D004197 ORTHO05D004975 2.5e-22 108.6 89 62.9
SEGI_18755 Sequoiadendron giganteum HOM05D004197 ORTHO05D004975 4.3e-22 107.8 91 54.9
C04p24770 Brassica napus HOM05D004197 ORTHO05D004975 7.4e-22 107.1 81 71.6
BolC4t23981H Brassica oleracea HOM05D004197 ORTHO05D004975 7.4e-22 107.1 81 71.6
SHI24203 Sapria himalayana HOM05D004197 ORTHO05D004975 1.6e-21 105.9 83 59.0
BcaC02g10824 Brassica carinata HOM05D004197 ORTHO05D004975 6.3e-21 104.0 81 70.4
Lsat_1_v5_gn_6_23540 Lactuca sativa HOM05D004197 ORTHO05D004975 1.8e-20 102.4 79 68.4
Peaxi162Scf00474g00723 Petunia axillaris HOM05D004197 ORTHO05D004975 2.2e-18 95.5 91 56.0
Gohir.D04G172540 Gossypium hirsutum HOM05D004197 ORTHO05D004975 3.6e-16 88.2 68 64.7
Gorai.012G161800 Gossypium raimondii HOM05D004197 ORTHO05D004975 1.8e-15 85.9 68 63.2
Lsat_1_v5_gn_2_131080 Lactuca sativa HOM05D004197 ORTHO05D004975 8.8e-15 83.6 80 57.5
Gorai.004G076200 Gossypium raimondii HOM05D004197 ORTHO05D004975 1.5e-14 82.8 58 69.0
unitig_736.g22525 Utricularia gibba HOM05D000398 ORTHO05D000551 3.3e-14 81.6 57 66.7
SMO347G0376 Selaginella moellendorffii HOM05D004197 ORTHO05D004975 3.7e-13 78.2 90 42.2
Cre06.g270650 Chlamydomonas reinhardtii HOM05D004197 ORTHO05D004975 1.8e-12 75.9 89 41.6
Gorai.004G234500 Gossypium raimondii HOM05D004197 ORTHO05D004975 4.1e-12 74.7 56 66.1
vmacro16589 Vaccinium macrocarpon HOM05D004197 ORTHO05D004975 3.6e-08 61.6 33 78.8
COL.COLO4_08144 Corchorus olitorius HOM05D004197 ORTHO05D004975 6.1e-08 60.8 33 78.8
Hma1.2p1_0150F.1_g066800 Hydrangea macrophylla HOM05D004197 ORTHO05D004975 6.1e-08 60.8 33 78.8
Actinidia27110 Actinidia chinensis HOM05D004197 ORTHO05D004975 1.0e-07 60.1 35 74.3
arahy.Tifrunner.gnm1.ann1.GGUP18 Arachis hypogaea HOM05D004197 ORTHO05D004975 3.0e-07 58.5 33 75.8
MCO09G643 Micromonas commoda HOM05D004197 ORTHO05D004975 3.0e-07 58.5 86 36.0
Thecc.10G088100 Theobroma cacao HOM05D004197 ORTHO05D004975 5.1e-07 57.8 89 40.4


User provided reference genes

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