Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb007220 Zea mays HOM05D004210 ORTHO05D005017 0.0e+00 1115.1 570 100.0
Os03g0207900 Oryza sativa ssp. japonica HOM05D004210 ORTHO05D005017 5.3e-251 870.9 570 77.9
HPP92_001742 Vanilla planifolia HOM05D004210 ORTHO05D005017 4.6e-194 681.8 564 62.6
Nn5g30473 Nelumbo nucifera HOM05D004210 ORTHO05D005017 5.0e-193 678.3 564 63.7
Dinv04121 Davidia involucrata HOM05D004210 ORTHO05D005017 1.1e-192 677.2 560 63.8
CANSAT56G1750 Cannabis sativa HOM05D004210 ORTHO05D005017 2.5e-192 676.0 524 65.8
TAR376G0596 Trochodendron aralioides HOM05D004210 ORTHO05D005017 3.1e-190 669.1 563 62.0
Actinidia18370 Actinidia chinensis HOM05D004210 ORTHO05D005017 2.6e-189 666.0 541 65.1
CiPaw.14G037100 Carya illinoinensis HOM05D004210 ORTHO05D005017 2.6e-189 666.0 558 62.0
TAR625G1450 Trochodendron aralioides HOM05D004210 ORTHO05D005017 1.4e-187 660.2 558 62.5
Potri.019G000900 Populus trichocarpa HOM05D004210 ORTHO05D005017 6.0e-186 654.8 562 61.6
QL04p049870 Quercus lobata HOM05D004210 ORTHO05D005017 6.0e-186 654.8 481 65.9
Haze_03415 Corylus avellana HOM05D004210 ORTHO05D005017 8.6e-185 651.0 559 61.5
Lj8A287G21 Lonicera japonica HOM05D004210 ORTHO05D005017 1.1e-184 650.6 571 61.3
Rhsim04G0193600 Rhododendron simsii HOM05D004210 ORTHO05D005017 2.1e-183 646.4 518 63.7
Ciclev10014800m.g Citrus clementina HOM05D004210 ORTHO05D005017 2.8e-183 646.0 563 60.4
Prupe.5G058900 Prunus persica HOM05D004210 ORTHO05D005017 4.7e-183 645.2 520 62.7
Sabra19G0005800 Salix brachista HOM05D004210 ORTHO05D005017 4.7e-183 645.2 575 60.0
Cpa.g.sc138.49 Carica papaya HOM05D004210 ORTHO05D005017 6.2e-183 644.8 562 60.5
COL.COLO4_16323 Corchorus olitorius HOM05D004210 ORTHO05D005017 8.1e-183 644.4 563 60.6
Potri.001G305500 Populus trichocarpa HOM05D004210 ORTHO05D005017 1.1e-182 644.0 544 62.9
MD07G1061200 Malus domestica HOM05D004210 ORTHO05D005017 1.8e-182 643.3 491 65.4
FvH4_2g10510 Fragaria vesca HOM05D004210 ORTHO05D005017 2.3e-182 642.9 520 62.7
Sabra19G0014200 Salix brachista HOM05D004210 ORTHO05D005017 2.3e-182 642.9 575 59.8
CsaV3_5G035020 Cucumis sativus L. HOM05D004210 ORTHO05D005017 3.1e-182 642.5 562 60.7
MELO3C012312.2 Cucumis melo HOM05D004210 ORTHO05D005017 4.0e-182 642.1 562 60.7
Nitab4.5_0001611g0030 Nicotiana tabacum HOM05D004210 ORTHO05D005017 6.8e-182 641.3 539 63.1
Duzib114G0085 Durio zibethinus HOM05D004210 ORTHO05D005017 1.2e-181 640.6 563 60.6
Thecc.10G122400 Theobroma cacao HOM05D004210 ORTHO05D005017 1.2e-181 640.6 563 60.0
Peaxi162Scf00647g00139 Petunia axillaris HOM05D004210 ORTHO05D005017 1.5e-181 640.2 533 62.7
RcHm_v2.0_Chr6g0268021 Rosa chinensis HOM05D004210 ORTHO05D005017 1.5e-181 640.2 520 62.9
FAN24G2713 Fragaria x ananassa HOM05D004210 ORTHO05D005017 2.0e-181 639.8 520 62.5
FAN27G0821 Fragaria x ananassa HOM05D004210 ORTHO05D005017 4.4e-181 638.6 525 62.3
Sabra16G0191800 Salix brachista HOM05D004210 ORTHO05D005017 7.5e-181 637.9 543 62.4
FAN20G0431 Fragaria x ananassa HOM05D004210 ORTHO05D005017 9.8e-181 637.5 520 62.3
FAN15G0031 Fragaria x ananassa HOM05D004210 ORTHO05D005017 1.3e-180 637.1 520 62.3
TAR381G0930 Trochodendron aralioides HOM05D004210 ORTHO05D005017 1.3e-180 637.1 471 65.6
ClCG05G022120 Citrullus lanatus HOM05D004210 ORTHO05D005017 3.7e-180 635.6 562 60.1
Manes.13G078700 Manihot esculenta HOM05D004210 ORTHO05D005017 3.7e-180 635.6 564 60.1
Gohir.A13G003500 Gossypium hirsutum HOM05D004210 ORTHO05D005017 4.9e-180 635.2 566 59.9
Aqoxy1G00569 Aquilegia oxysepala HOM05D004210 ORTHO05D005017 6.4e-180 634.8 562 60.3
CDE04G1921 Ceratophyllum demersum HOM05D004210 ORTHO05D005017 6.4e-180 634.8 564 60.3
PGR142G1915 Punica granatum HOM05D004210 ORTHO05D005017 8.3e-180 634.4 565 59.1
CDE07G1685 Ceratophyllum demersum HOM05D004210 ORTHO05D005017 1.1e-179 634.0 570 59.8
GSVIVG01018295001 Vitis vinifera HOM05D004210 ORTHO05D005017 1.1e-179 634.0 563 60.4
Glyma.06G315900 Glycine max HOM05D004210 ORTHO05D005017 1.9e-179 633.3 543 61.0
MSTRG.20468 Avicennia marina HOM05D004210 ORTHO05D005017 2.4e-179 632.9 514 61.9
Glyma.13G124200 Glycine max HOM05D004210 ORTHO05D005017 7.1e-179 631.3 552 60.5
Nitab4.5_0004014g0070 Nicotiana tabacum HOM05D004210 ORTHO05D005017 2.7e-178 629.4 539 62.3
vmacro20845 Vaccinium macrocarpon HOM05D004210 ORTHO05D005017 3.5e-178 629.0 519 62.8
Phvul.008G161500 Phaseolus vulgaris HOM05D004210 ORTHO05D005017 4.6e-178 628.6 554 60.1
Atru.chr10.436 Acer truncatum HOM05D004210 ORTHO05D005017 6.0e-178 628.2 562 58.9
Sed0024731 Sechium edule HOM05D004210 ORTHO05D005017 1.0e-177 627.5 551 59.0
Sed0005167 Sechium edule HOM05D004210 ORTHO05D005017 2.3e-177 626.3 560 59.5
Cc08_g06030 Coffea canephora HOM05D004210 ORTHO05D005017 3.9e-177 625.5 534 61.2
Gohir.D13G003400 Gossypium hirsutum HOM05D004210 ORTHO05D005017 3.9e-177 625.5 562 58.5
Gorai.013G003300 Gossypium raimondii HOM05D004210 ORTHO05D005017 6.6e-177 624.8 562 58.4
Glyma.05G087400 Glycine max HOM05D004210 ORTHO05D005017 8.6e-177 624.4 550 59.6
MD02G1259400 Malus domestica HOM05D004210 ORTHO05D005017 8.6e-177 624.4 491 64.0
Medtr8g045440 Medicago truncatula HOM05D004210 ORTHO05D005017 1.5e-176 623.6 562 58.4
ATR0661G188 Amborella trichopoda HOM05D004210 ORTHO05D005017 1.9e-176 623.2 579 56.3
PGSC0003DMG400027522 Solanum tuberosum HOM05D004210 ORTHO05D005017 1.9e-176 623.2 537 60.7
Sopen01g040660 Solanum pennellii HOM05D004210 ORTHO05D005017 1.6e-175 620.2 536 60.8
Migut.B01123 Erythranthe guttata HOM05D004210 ORTHO05D005017 2.1e-175 619.8 531 60.3
PSO541G0139 Papaver somniferum HOM05D004210 ORTHO05D005017 1.8e-174 616.7 566 57.6
Medtr8g041740 Medicago truncatula HOM05D004210 ORTHO05D005017 3.1e-174 615.9 561 58.1
Glyma.08G229800 Glycine max HOM05D004210 ORTHO05D005017 2.6e-173 612.8 563 58.4
Solyc01g096950.4 Solanum lycopersicum HOM05D004210 ORTHO05D005017 3.4e-173 612.5 535 60.2
Phvul.003G276000 Phaseolus vulgaris HOM05D004210 ORTHO05D005017 4.4e-173 612.1 563 58.1
TPR.G24022 Trifolium pratense HOM05D004210 ORTHO05D005017 9.9e-173 610.9 562 57.8
arahy.Tifrunner.gnm1.ann1.374KBL Arachis hypogaea HOM05D004210 ORTHO05D005017 2.2e-172 609.8 564 58.5
arahy.Tifrunner.gnm1.ann1.3JDG4T Arachis hypogaea HOM05D004210 ORTHO05D005017 2.2e-172 609.8 564 58.7
CSS0018495 Camellia sinensis var. sinensis HOM05D004210 ORTHO05D005017 4.9e-172 608.6 563 59.0
DCAR_002139 Daucus carota HOM05D004210 ORTHO05D005017 4.9e-172 608.6 542 59.6
Glyma.04G129500 Glycine max HOM05D004210 ORTHO05D005017 8.4e-172 607.8 489 62.8
TPR.G14605 Trifolium pratense HOM05D004210 ORTHO05D005017 8.4e-172 607.8 561 57.8
Lj3g0025560 Lotus japonicus HOM05D004210 ORTHO05D005017 1.9e-171 606.7 560 58.4
Aa31LG8G7780 Aethionema arabicum HOM05D004210 ORTHO05D005017 3.2e-171 605.9 561 57.4
Lalb_Chr01g0007661 Lupinus albus HOM05D004210 ORTHO05D005017 3.2e-171 605.9 548 58.4
Sc18g0006930 Simmondsia chinensis HOM05D004210 ORTHO05D005017 3.2e-171 605.9 572 57.9
SalBow4G0418 Salvia bowleyana HOM05D004210 ORTHO05D005017 1.6e-170 603.6 532 58.8
arahy.Tifrunner.gnm1.ann1.A6SQAT Arachis hypogaea HOM05D004210 ORTHO05D005017 1.7e-169 600.1 564 58.0
PSO478G0462 Papaver somniferum HOM05D004210 ORTHO05D005017 1.7e-169 600.1 566 57.1
VMungo0251G3202 Vigna mungo HOM05D004210 ORTHO05D005017 2.3e-169 599.7 563 57.4
Ca_05576_v3 Cicer arietinum L. HOM05D004210 ORTHO05D005017 3.9e-169 599.0 599 53.6
BraA01t03490Z Brassica rapa HOM05D004210 ORTHO05D005017 1.2e-167 594.0 552 57.2
C01p43210 Brassica napus HOM05D004210 ORTHO05D005017 1.6e-167 593.6 559 57.1
Thhalv10020461m.g Eutrema salsugineum HOM05D004210 ORTHO05D005017 1.6e-167 593.6 564 56.2
Oeu012473.1 Olea europaea HOM05D004210 ORTHO05D005017 2.1e-167 593.2 488 61.1
BolC1t04267H Brassica oleracea HOM05D004210 ORTHO05D005017 2.8e-167 592.8 559 56.7
Sp3g19020 Schrenkiella parvula HOM05D004210 ORTHO05D005017 3.6e-167 592.4 559 56.5
Medtr8g045463 Medicago truncatula HOM05D004210 ORTHO05D005017 1.1e-166 590.9 535 57.8
Medtr8g045470 Medicago truncatula HOM05D004210 ORTHO05D005017 1.1e-166 590.9 535 57.8
BcaC09g49045 Brassica carinata HOM05D004210 ORTHO05D005017 1.4e-166 590.5 559 56.7
THA.LOC104804661 Tarenaya hassleriana HOM05D004210 ORTHO05D005017 4.0e-166 589.0 564 56.9
Psat4g180480 Pisum sativum HOM05D004210 ORTHO05D005017 1.5e-165 587.0 564 56.0
AT3G21060 Arabidopsis thaliana HOM05D004210 ORTHO05D005017 4.4e-165 585.5 568 56.7
Hund06390 Selenicereus undatus HOM05D004210 ORTHO05D005017 5.8e-165 585.1 532 57.5
Sabra19G0013500 Salix brachista HOM05D004210 ORTHO05D005017 9.9e-165 584.3 526 60.1
Carub.0003s2096 Capsella rubella HOM05D004210 ORTHO05D005017 2.9e-164 582.8 560 55.4
Lalb_Chr18g0049111 Lupinus albus HOM05D004210 ORTHO05D005017 3.8e-164 582.4 542 56.6
Sabra19G0006000 Salix brachista HOM05D004210 ORTHO05D005017 8.4e-164 581.3 526 59.9
Oeu027040.1 Olea europaea HOM05D004210 ORTHO05D005017 1.9e-163 580.1 464 61.6
BcaB04g20615 Brassica carinata HOM05D004210 ORTHO05D005017 5.4e-163 578.6 569 55.4
Hma1.2p1_0892F.1_g233380 Hydrangea macrophylla HOM05D004210 ORTHO05D005017 7.1e-163 578.2 528 59.3
Manes.13G077346 Manihot esculenta HOM05D004210 ORTHO05D005017 9.3e-163 577.8 406 67.7
Hund00055 Selenicereus undatus HOM05D004210 ORTHO05D005017 1.6e-162 577.0 643 50.7
CARHR096890 Cardamine hirsuta HOM05D004210 ORTHO05D005017 6.0e-162 575.1 562 55.5
AUR62001320 Chenopodium quinoa HOM05D004210 ORTHO05D005017 1.3e-161 573.9 558 54.3
EL10Ac7g18124 Beta vulgaris HOM05D004210 ORTHO05D005017 2.3e-161 573.2 537 56.8
ECA248G0690 Erigeron canadensis HOM05D004210 ORTHO05D005017 5.6e-160 568.5 525 55.0
Psat4g200760 Pisum sativum HOM05D004210 ORTHO05D005017 1.3e-159 567.4 561 54.9
AUR62025703 Chenopodium quinoa HOM05D004210 ORTHO05D005017 8.1e-159 564.7 563 54.0
Duzib106G1791 Durio zibethinus HOM05D004210 ORTHO05D005017 3.1e-158 562.8 526 58.6
Lsat_1_v5_gn_4_138820 Lactuca sativa HOM05D004210 ORTHO05D005017 4.0e-158 562.4 577 54.6
HanXRQChr09g0259631 Helianthus annuus HOM05D004210 ORTHO05D005017 2.4e-155 553.1 560 55.7
VMungo0647G0038 Vigna mungo HOM05D004210 ORTHO05D005017 2.4e-155 553.1 518 58.7
SGA_v2.0_scaffold196G40978 Striga asiatica HOM05D004210 ORTHO05D005017 7.1e-155 551.6 551 53.5
AL249U10010 Arabidopsis lyrata HOM05D004210 ORTHO05D005017 4.3e-152 542.3 403 63.5
AL3G35010 Arabidopsis lyrata HOM05D004210 ORTHO05D005017 1.3e-151 540.8 553 54.6
A01p33790 Brassica napus HOM05D004210 ORTHO05D005017 9.9e-149 531.2 515 56.5
Pp3c12_14420 Physcomitrium patens HOM05D004210 ORTHO05D005017 1.1e-142 511.1 554 50.0
Mapoly0028s0049 Marchantia polymorpha HOM05D004210 ORTHO05D005017 4.0e-142 509.2 577 49.9
HanXRQChr14g0446551 Helianthus annuus HOM05D004210 ORTHO05D005017 7.9e-138 495.0 479 52.8
Psat2g059840 Pisum sativum HOM05D004210 ORTHO05D005017 1.3e-135 487.6 539 49.9
Ca_13103_v3 Cicer arietinum L. HOM05D004210 ORTHO05D005017 2.8e-135 486.5 576 48.8
ECA238G3001 Erigeron canadensis HOM05D004210 ORTHO05D005017 1.8e-134 483.8 528 51.1
TWI75G1118 Tripterygium wilfordii HOM05D004210 ORTHO05D005017 6.3e-127 458.8 503 51.3
AagrBONN_evm.TU.Sc2ySwM_368.940 Anthoceros agrestis HOM05D004210 ORTHO05D005017 5.9e-125 452.2 582 45.2
AagrBONN_evm.TU.Sc2ySwM_344.4521 Anthoceros agrestis HOM05D004210 ORTHO05D005017 7.9e-122 441.8 569 45.2
SMO145G0186 Selaginella moellendorffii HOM05D004210 ORTHO05D005017 5.3e-118 429.1 570 45.1
Ca_24139_v3 Cicer arietinum L. HOM05D004210 ORTHO05D005017 3.3e-112 409.8 561 45.8
Eucgr.G02654 Eucalyptus grandis HOM05D004210 ORTHO05D005017 1.3e-111 407.9 434 53.2
Lalb_Chr03g0032281 Lupinus albus HOM05D004210 ORTHO05D005017 1.0e-108 398.3 439 54.0
Ca_24147_v3 Cicer arietinum L. HOM05D004210 ORTHO05D005017 1.1e-107 394.8 360 58.1
Dinv30359 Davidia involucrata HOM05D004210 ORTHO05D005017 6.7e-105 385.6 378 57.4
Phvul.011G184500 Phaseolus vulgaris HOM05D004210 ORTHO05D005017 1.2e-104 384.8 462 46.1
unitig_26.g9497 Utricularia gibba HOM05D004210 ORTHO05D005017 1.7e-103 380.9 382 54.5
SEGI_20000 Sequoiadendron giganteum HOM05D004210 ORTHO05D005017 8.6e-92 342.0 307 53.1
CSS0025743 Camellia sinensis var. sinensis HOM05D004210 ORTHO05D005017 2.1e-90 337.4 391 50.4
CBR_g18561 Chara braunii HOM05D004210 ORTHO05D005017 8.8e-89 332.0 642 36.3
CBR_g10843 Chara braunii HOM05D004210 ORTHO05D005017 2.9e-84 317.0 629 35.3
Cre03.g195750 Chlamydomonas reinhardtii HOM05D004210 ORTHO05D005017 1.7e-55 221.5 461 32.3
MBI16_g14436_MAGBIO Magnolia biondii HOM05D004210 ORTHO05D005017 4.3e-51 206.8 249 48.6
SEGI_15684 Sequoiadendron giganteum HOM05D004210 ORTHO05D005017 6.9e-49 199.5 260 46.9
Dinv18710 Davidia involucrata HOM05D004210 ORTHO05D005017 4.4e-48 196.8 323 42.4
PRCOL_00000885 Prasinoderma coloniale HOM05D004210 ORTHO05D005017 8.4e-47 192.6 520 30.4
Dinv18720 Davidia involucrata HOM05D004210 ORTHO05D005017 3.2e-46 190.7 166 63.9
MCO03G571 Micromonas commoda HOM05D004210 ORTHO05D005017 9.3e-46 189.1 471 32.1
Glyma.12G171232 Glycine max HOM05D004210 ORTHO05D013328 7.1e-38 162.9 96 71.9
Pp3c4_7580 Physcomitrium patens HOM05D004210 ORTHO05D005017 3.0e-36 157.5 367 33.2
VMungo1127G1364 Vigna mungo HOM05D004210 ORTHO05D005017 1.5e-35 155.2 169 47.9
Atru.chr12.1163 Acer truncatum HOM05D004210 ORTHO05D005017 2.5e-35 154.5 91 74.7
Cfa023087 Carpinus fangiana HOM05D004210 ORTHO05D005017 4.8e-34 150.2 441 29.0
Dinv18721 Davidia involucrata HOM05D004210 ORTHO05D005017 8.1e-34 149.4 100 73.0
Aa31LG8G7760 Aethionema arabicum HOM05D004210 ORTHO05D005017 6.9e-33 146.4 118 61.0
Rhsim01G0121500 Rhododendron simsii HOM05D004210 ORTHO05D005017 1.6e-29 135.2 111 62.2
Medtr5g069620 Medicago truncatula HOM05D004210 ORTHO05D005017 2.2e-18 98.2 86 51.2
Manes.13G077544 Manihot esculenta HOM05D004210 ORTHO05D005017 7.9e-13 79.7 172 41.3
Atru.chr12.1162 Acer truncatum HOM05D004210 ORTHO05D005017 1.5e-11 75.5 154 40.9
Hma1.2p1_0892F.1_g233370 Hydrangea macrophylla HOM05D004210 ORTHO05D005017 1.5e-11 75.5 40 77.5
unitig_26.g9496 Utricularia gibba HOM05D004210 ORTHO05D005017 2.5e-11 74.7 61 52.5
Nn1g04650 Nelumbo nucifera HOM05D004210 ORTHO05D005017 1.3e-10 72.4 40 75.0
Lalb_Chr03g0032271 Lupinus albus HOM05D004210 ORTHO05D005017 1.3e-07 62.4 32 81.2
Nn1g02745 Nelumbo nucifera HOM05D000508 ORTHO05D000371 8.5e-07 59.7 157 31.2
SHI06412 Sapria himalayana HOM05D004210 ORTHO05D000023 1.1e-06 59.3 33 72.7
MD09G1146400 Malus domestica HOM05D001610 ORTHO05D001585 5.5e-06 57.0 80 33.8


User provided reference genes

Program Settings