Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb006920 Zea mays HOM05D001920 ORTHO05D005408 0.0e+00 1128.6 595 100.0
Zm00001eb401360 Zea mays HOM05D001920 ORTHO05D005408 3.2e-299 1031.2 593 90.9
Os12g0538300 Oryza sativa ssp. japonica HOM05D001920 ORTHO05D005408 3.6e-274 948.0 607 84.7
HPP92_005529 Vanilla planifolia HOM05D001920 ORTHO05D005408 1.9e-227 792.7 515 76.1
Prupe.1G408800 Prunus persica HOM05D001920 ORTHO05D005408 2.2e-223 779.2 503 75.9
TAR626G1364 Trochodendron aralioides HOM05D001920 ORTHO05D005408 8.3e-223 777.3 513 74.9
Duzib187G1306 Durio zibethinus HOM05D001920 ORTHO05D005408 2.4e-222 775.8 510 73.7
Potri.006G225500 Populus trichocarpa HOM05D001920 ORTHO05D005408 1.2e-221 773.5 536 70.5
Gohir.D08G268800 Gossypium hirsutum HOM05D001920 ORTHO05D005408 2.7e-221 772.3 504 74.0
PSO210G2773 Papaver somniferum HOM05D001920 ORTHO05D005408 2.7e-221 772.3 510 75.7
CSS0047067 Camellia sinensis var. sinensis HOM05D001920 ORTHO05D005408 4.6e-221 771.5 491 76.0
Gorai.004G286500 Gossypium raimondii HOM05D001920 ORTHO05D005408 4.6e-221 771.5 504 73.8
Cfa017979 Carpinus fangiana HOM05D001920 ORTHO05D005408 1.7e-220 769.6 507 73.2
Medtr8g074590 Medicago truncatula HOM05D001920 ORTHO05D005408 3.0e-220 768.8 503 74.6
COL.COLO4_21094 Corchorus olitorius HOM05D001920 ORTHO05D005408 5.0e-220 768.1 515 72.8
GSVIVG01035413001 Vitis vinifera HOM05D001920 ORTHO05D005408 5.0e-220 768.1 495 75.4
CsaV3_4G035800 Cucumis sativus L. HOM05D001920 ORTHO05D005408 6.6e-220 767.7 493 74.8
Migut.D00410 Erythranthe guttata HOM05D001920 ORTHO05D005408 6.6e-220 767.7 514 73.3
Atru.chr7.1932 Acer truncatum HOM05D001920 ORTHO05D005408 8.6e-220 767.3 505 74.5
CANSAT11G1997 Cannabis sativa HOM05D001920 ORTHO05D005408 1.1e-219 766.9 508 74.0
PSO210G7360 Papaver somniferum HOM05D001920 ORTHO05D005408 1.1e-219 766.9 507 75.0
Gohir.A08G247700 Gossypium hirsutum HOM05D001920 ORTHO05D005408 1.9e-219 766.1 504 73.4
Ciclev10007867m.g Citrus clementina HOM05D001920 ORTHO05D005408 3.3e-219 765.4 492 75.6
PGR044G1731 Punica granatum HOM05D001920 ORTHO05D005408 3.3e-219 765.4 511 73.2
HanXRQChr10g0309741 Helianthus annuus HOM05D001920 ORTHO05D005408 5.6e-219 764.6 517 71.8
Thecc.09G057700 Theobroma cacao HOM05D001920 ORTHO05D005408 1.6e-218 763.1 507 73.6
Ca_03647_v3 Cicer arietinum L. HOM05D001920 ORTHO05D005408 2.1e-218 762.7 501 74.1
Lsat_1_v5_gn_4_73880 Lactuca sativa HOM05D001920 ORTHO05D005408 2.1e-218 762.7 562 67.3
MD08G1065800 Malus domestica HOM05D001920 ORTHO05D005408 2.1e-218 762.7 497 75.1
MD15G1055600 Malus domestica HOM05D001920 ORTHO05D005408 2.1e-218 762.7 498 74.9
Dinv12437 Davidia involucrata HOM05D001920 ORTHO05D005408 2.8e-218 762.3 498 75.3
HanXRQChr12g0359101 Helianthus annuus HOM05D001920 ORTHO05D005408 2.8e-218 762.3 519 71.7
Sabra06G0174400 Salix brachista HOM05D001920 ORTHO05D005408 3.6e-218 761.9 508 72.6
Sp6g31610 Schrenkiella parvula HOM05D001920 ORTHO05D005408 3.6e-218 761.9 501 72.5
THA.LOC104799157 Tarenaya hassleriana HOM05D001920 ORTHO05D005408 4.7e-218 761.5 508 73.2
A02p01310 Brassica napus HOM05D001920 ORTHO05D005408 6.2e-218 761.1 501 72.3
BraA02t05109Z Brassica rapa HOM05D001920 ORTHO05D005408 6.2e-218 761.1 501 72.3
Haze_18151 Corylus avellana HOM05D001920 ORTHO05D005408 6.2e-218 761.1 592 65.7
SalBow4G2367 Salvia bowleyana HOM05D001920 ORTHO05D005408 6.2e-218 761.1 523 71.5
BcaC03g13404 Brassica carinata HOM05D001920 ORTHO05D005408 8.0e-218 760.8 501 72.3
C02p05530 Brassica napus HOM05D001920 ORTHO05D005408 8.0e-218 760.8 501 72.3
BolC2t06498H Brassica oleracea HOM05D001920 ORTHO05D005408 8.0e-218 760.8 501 72.3
CiPaw.15G036600 Carya illinoinensis HOM05D001920 ORTHO05D005408 8.0e-218 760.8 497 74.8
Psat4g103240 Pisum sativum HOM05D001920 ORTHO05D005408 1.4e-217 760.0 501 74.1
Manes.16G082600 Manihot esculenta HOM05D001920 ORTHO05D005408 1.8e-217 759.6 491 75.2
vmacro07770 Vaccinium macrocarpon HOM05D001920 ORTHO05D005408 1.8e-217 759.6 514 72.4
CAN.G219.68 Capsicum annuum HOM05D001920 ORTHO05D005408 2.3e-217 759.2 491 74.9
CARHR201150 Cardamine hirsuta HOM05D001920 ORTHO05D005408 2.3e-217 759.2 501 72.1
arahy.Tifrunner.gnm1.ann1.9L6JUF Arachis hypogaea HOM05D001920 ORTHO05D005408 3.1e-217 758.8 509 73.5
VMungo0251G2102 Vigna mungo HOM05D001920 ORTHO05D005408 3.1e-217 758.8 504 73.0
AL6G22770 Arabidopsis lyrata HOM05D001920 ORTHO05D005408 5.2e-217 758.1 501 72.1
Phvul.003G267800 Phaseolus vulgaris HOM05D001920 ORTHO05D005408 5.2e-217 758.1 503 73.2
Aqoxy6G00323 Aquilegia oxysepala HOM05D001920 ORTHO05D005408 6.8e-217 757.7 523 72.3
PGSC0003DMG400006851 Solanum tuberosum HOM05D001920 ORTHO05D005408 1.2e-216 756.9 491 74.7
Ah.09g228460 Amaranthus hybridus HOM05D001920 ORTHO05D005408 1.5e-216 756.5 523 70.7
Thhalv10013117m.g Eutrema salsugineum HOM05D001920 ORTHO05D005408 2.0e-216 756.1 501 72.1
Lalb_Chr22g0356171 Lupinus albus HOM05D001920 ORTHO05D005408 2.0e-216 756.1 516 72.1
RhsimUnG0209800 Rhododendron simsii HOM05D001920 ORTHO05D005408 2.0e-216 756.1 506 72.7
Sc23g0005750 Simmondsia chinensis HOM05D001920 ORTHO05D005408 2.0e-216 756.1 568 67.1
Peaxi162Scf00694g00218 Petunia axillaris HOM05D001920 ORTHO05D005408 2.6e-216 755.7 503 73.8
Carub.0006s1052 Capsella rubella HOM05D001920 ORTHO05D005408 3.4e-216 755.4 511 70.6
Solyc01g087650.4 Solanum lycopersicum HOM05D001920 ORTHO05D005408 3.4e-216 755.4 503 73.6
RcHm_v2.0_Chr6g0311281 Rosa chinensis HOM05D001920 ORTHO05D005408 9.8e-216 753.8 506 72.9
Actinidia29326 Actinidia chinensis HOM05D001920 ORTHO05D005408 1.3e-215 753.4 548 69.3
C03p06150 Brassica napus HOM05D001920 ORTHO05D005408 1.3e-215 753.4 501 72.1
Glyma.02G043400 Glycine max HOM05D001920 ORTHO05D005408 2.2e-215 752.7 501 73.1
arahy.Tifrunner.gnm1.ann1.RZJX0Q Arachis hypogaea HOM05D001920 ORTHO05D005408 3.7e-215 751.9 507 72.6
EL10Ac8g19267 Beta vulgaris HOM05D001920 ORTHO05D005408 4.9e-215 751.5 505 71.9
BolC3t13123H Brassica oleracea HOM05D001920 ORTHO05D005408 4.9e-215 751.5 501 71.7
Cc08_g10930 Coffea canephora HOM05D001920 ORTHO05D005408 4.9e-215 751.5 503 72.4
FAN20G0594 Fragaria x ananassa HOM05D001920 ORTHO05D005408 4.9e-215 751.5 492 74.4
Glyma.16G120600 Glycine max HOM05D001920 ORTHO05D005408 4.9e-215 751.5 488 74.6
ClCG05G018020 Citrullus lanatus HOM05D001920 ORTHO05D005408 8.3e-215 750.7 493 73.8
Nitab4.5_0004053g0020 Nicotiana tabacum HOM05D001920 ORTHO05D005408 8.3e-215 750.7 496 74.4
Hund19436 Selenicereus undatus HOM05D001920 ORTHO05D005408 8.3e-215 750.7 509 71.3
Sopen01g034610 Solanum pennellii HOM05D001920 ORTHO05D005408 8.3e-215 750.7 503 73.2
MSTRG.14078 Avicennia marina HOM05D001920 ORTHO05D005408 1.1e-214 750.4 508 72.0
TWI34G1596 Tripterygium wilfordii HOM05D001920 ORTHO05D005408 1.9e-214 749.6 493 74.0
Aa31LG3G15240 Aethionema arabicum HOM05D001920 ORTHO05D005408 5.4e-214 748.0 536 68.3
FvH4_2g31510 Fragaria vesca HOM05D001920 ORTHO05D005408 7.1e-214 747.7 492 74.2
FAN27G2437 Fragaria x ananassa HOM05D001920 ORTHO05D005408 9.2e-214 747.3 503 72.6
CDE05G1481 Ceratophyllum demersum HOM05D001920 ORTHO05D005408 2.1e-213 746.1 483 73.9
QL02p000680 Quercus lobata HOM05D001920 ORTHO05D005408 2.7e-213 745.7 523 71.1
ATR0686G037 Amborella trichopoda HOM05D001920 ORTHO05D005408 3.5e-213 745.3 508 72.2
arahy.Tifrunner.gnm1.ann1.14SSX1 Arachis hypogaea HOM05D001920 ORTHO05D005408 4.6e-213 745.0 507 71.8
arahy.Tifrunner.gnm1.ann1.UJN8CA Arachis hypogaea HOM05D001920 ORTHO05D005408 6.0e-213 744.6 529 70.5
A03p05350 Brassica napus HOM05D001920 ORTHO05D005408 6.0e-213 744.6 497 71.2
Lj4g0027878 Lotus japonicus HOM05D001920 ORTHO05D005408 1.3e-212 743.4 491 73.5
TWI63G1659 Tripterygium wilfordii HOM05D001920 ORTHO05D005408 2.3e-212 742.7 492 73.4
Lj7A258G43 Lonicera japonica HOM05D001920 ORTHO05D005408 3.9e-212 741.9 514 72.8
FAN15G2558 Fragaria x ananassa HOM05D001920 ORTHO05D005408 5.1e-212 741.5 513 71.5
Migut.E01586 Erythranthe guttata HOM05D001920 ORTHO05D005408 7.3e-211 737.6 495 72.7
FAN24G1332 Fragaria x ananassa HOM05D001920 ORTHO05D005408 1.6e-210 736.5 502 72.5
BraA03t09873Z Brassica rapa HOM05D001920 ORTHO05D005408 4.7e-210 734.9 527 67.7
AUR62031243 Chenopodium quinoa HOM05D001920 ORTHO05D005408 2.0e-208 729.6 571 65.0
Nn8g38775 Nelumbo nucifera HOM05D001920 ORTHO05D005408 3.4e-208 728.8 457 77.7
BcaB01g05437 Brassica carinata HOM05D001920 ORTHO05D005408 6.4e-207 724.5 476 72.3
RhsimUnG0018300 Rhododendron simsii HOM05D001920 ORTHO05D005408 8.3e-207 724.2 506 70.6
AUR62027456 Chenopodium quinoa HOM05D001920 ORTHO05D005408 1.4e-206 723.4 510 69.4
DCAR_003139 Daucus carota HOM05D001920 ORTHO05D005408 3.5e-205 718.8 595 62.7
AT5G11980 Arabidopsis thaliana HOM05D001920 ORTHO05D005408 6.0e-205 718.0 468 74.6
BcaNung02634 Brassica carinata HOM05D001920 ORTHO05D005408 1.5e-203 713.4 505 69.1
ECA234G0290 Erigeron canadensis HOM05D001920 ORTHO05D005408 4.3e-203 711.8 505 69.9
MELO3C016885.2 Cucumis melo HOM05D001920 ORTHO05D005408 2.8e-202 709.1 493 71.0
unitig_8.g5056 Utricularia gibba HOM05D001920 ORTHO05D005408 8.1e-202 707.6 507 69.0
Actinidia03557 Actinidia chinensis HOM05D001920 ORTHO05D005408 4.4e-192 675.2 476 70.0
Eucgr.C03063 Eucalyptus grandis HOM05D001920 ORTHO05D005408 5.8e-192 674.9 469 71.0
Cpa.g.sc222.19 Carica papaya HOM05D001920 ORTHO05D005408 2.6e-184 649.4 493 67.1
Hma1.2p1_0077F.1_g039730 Hydrangea macrophylla HOM05D001920 ORTHO05D005408 1.7e-183 646.7 440 72.5
Mapoly0087s0038 Marchantia polymorpha HOM05D001920 ORTHO05D005408 1.1e-182 644.0 491 64.4
TPR.G14979 Trifolium pratense HOM05D001920 ORTHO05D005408 4.2e-182 642.1 405 76.8
Pp3c10_11790 Physcomitrium patens HOM05D001920 ORTHO05D005408 1.5e-176 623.6 493 61.3
MBI18_g38862_MAGBIO Magnolia biondii HOM05D001920 ORTHO05D005408 7.6e-176 621.3 493 64.5
Sed0005880 Sechium edule HOM05D001920 ORTHO05D005408 1.9e-174 616.7 444 68.5
Sed0005137 Sechium edule HOM05D001920 ORTHO05D005408 2.5e-171 606.3 391 73.4
CBR_g34170 Chara braunii HOM05D001920 ORTHO05D005408 1.3e-170 604.0 481 60.7
Hma1.2p1_0196F.1_g084800 Hydrangea macrophylla HOM05D001920 ORTHO05D005408 9.0e-169 597.8 477 64.2
SMO356G0672 Selaginella moellendorffii HOM05D001920 ORTHO05D005408 3.8e-167 592.4 508 59.3
SHI18715 Sapria himalayana HOM05D001920 ORTHO05D005408 1.6e-162 577.0 456 62.9
SGA_v2.0_scaffold169G38703 Striga asiatica HOM05D001920 ORTHO05D005408 1.3e-159 567.4 575 56.0
Nitab4.5_0000707g0110 Nicotiana tabacum HOM05D001920 ORTHO05D005408 6.7e-156 555.1 497 59.2
Oeu003998.1 Olea europaea HOM05D001920 ORTHO05D005408 6.1e-149 531.9 506 57.7
Lj7C259T3 Lonicera japonica HOM05D001920 ORTHO05D005408 7.4e-147 525.0 318 79.2
Pp3c2_14420 Physcomitrium patens HOM05D001920 ORTHO05D005408 1.6e-144 517.3 402 61.4
RcHm_v2.0_Chr4g0442191 Rosa chinensis HOM05D001920 ORTHO05D005408 6.5e-143 511.9 503 54.5
MBI05_g36626_MAGBIO Magnolia biondii HOM05D001920 ORTHO05D005408 4.0e-140 502.7 506 53.8
FvH4_4g33140 Fragaria vesca HOM05D001920 ORTHO05D005408 6.7e-140 501.9 494 54.5
FAN12G3829 Fragaria x ananassa HOM05D001920 ORTHO05D005408 2.0e-139 500.4 494 54.0
FAN07G1923 Fragaria x ananassa HOM05D001920 ORTHO05D005408 1.2e-136 491.1 495 54.5
SGA_v2.0_scaffold163G38013 Striga asiatica HOM05D001920 ORTHO05D005408 5.5e-134 482.3 354 70.3
Lj7C264G4 Lonicera japonica HOM05D001920 ORTHO05D005408 4.4e-131 472.6 461 54.0
AagrBONN_evm.TU.Sc2ySwM_228.4615 Anthoceros agrestis HOM05D001920 ORTHO05D005408 1.8e-124 450.7 331 66.2
PRCOL_00001520 Prasinoderma coloniale HOM05D001920 ORTHO05D005408 2.0e-123 447.2 520 46.5
FAN22G0219 Fragaria x ananassa HOM05D001920 ORTHO05D005408 2.3e-116 423.7 491 47.7
Cre10.g439650 Chlamydomonas reinhardtii HOM05D001920 ORTHO05D005408 2.2e-98 364.0 557 39.7
Oeu004630.1 Olea europaea HOM05D001920 ORTHO05D005408 7.6e-91 339.0 540 40.9
FAN17G1736 Fragaria x ananassa HOM05D001920 ORTHO05D005408 4.6e-88 329.7 430 45.6
MCO04G241 Micromonas commoda HOM05D001920 ORTHO05D005408 1.4e-84 318.2 430 41.6
FAN12G2252 Fragaria x ananassa HOM05D001920 ORTHO05D005408 3.3e-78 297.0 363 50.7
Migut.A00111 Erythranthe guttata HOM05D001920 ORTHO05D005408 1.8e-60 238.0 168 70.8
CDE05G0360 Ceratophyllum demersum HOM05D001920 ORTHO05D005408 2.1e-56 224.6 151 68.2
CDE05G1717 Ceratophyllum demersum HOM05D001920 ORTHO05D005408 1.9e-49 201.4 256 44.5
Gorai.009G043000 Gossypium raimondii HOM05D001920 ORTHO05D005408 1.3e-47 195.3 516 31.2
Zm00001eb014540 Zea mays HOM05D000282 ORTHO05D000272 5.3e-44 183.3 101 95.0
MBI13_g05979_MAGBIO Magnolia biondii HOM05D001920 ORTHO05D005408 1.2e-43 182.2 397 33.5
SEGI_36171 Sequoiadendron giganteum HOM05D001920 ORTHO05D000001 1.9e-41 174.9 140 64.3
arahy.Tifrunner.gnm1.ann1.NPWH83 Arachis hypogaea HOM05D001920 ORTHO05D005408 6.3e-37 159.8 102 75.5
MSTRG.25967 Avicennia marina HOM05D001920 ORTHO05D005408 2.2e-34 151.4 137 59.9
Gohir.D05G042133 Gossypium hirsutum HOM05D001920 ORTHO05D005408 3.0e-31 141.0 460 27.8
Lj7A264G15 Lonicera japonica HOM05D001920 ORTHO05D005408 3.7e-29 134.0 100 68.0
BcaNung02635 Brassica carinata HOM05D001920 ORTHO05D005408 4.5e-27 127.1 80 76.2
Eucgr.L03492 Eucalyptus grandis HOM05D001920 ORTHO05D005408 1.3e-21 109.0 89 57.3
TPR.G36194 Trifolium pratense HOM05D001920 ORTHO05D005408 3.7e-21 107.5 91 60.4
Hma1.2p1_0196F.1_g084820 Hydrangea macrophylla HOM05D001920 ORTHO05D005408 1.4e-20 105.5 96 54.2
TPR.G748 Trifolium pratense HOM05D001920 ORTHO05D005408 2.2e-18 98.2 65 76.9
BcaC05g26027 Brassica carinata HOM05D001920 ORTHO05D024365 1.2e-16 92.4 69 68.1
SGA_v2.0_scaffold26G11215 Striga asiatica HOM05D001920 ORTHO05D024365 2.6e-14 84.7 50 82.0
TPR.G36118 Trifolium pratense HOM05D001920 ORTHO05D005408 1.6e-11 75.5 54 68.5
MBI17_g36954_MAGBIO Magnolia biondii HOM05D001920 ORTHO05D012920 2.7e-11 74.7 52 69.2
C05p19930 Brassica napus HOM05D001920 ORTHO05D024365 5.9e-11 73.6 49 71.4
BolC5t30691H Brassica oleracea HOM05D001920 ORTHO05D024365 2.2e-10 71.6 58 63.8
C06p01410 Brassica napus HOM05D001920 ORTHO05D024365 2.1e-08 65.1 106 40.6
Lsat_1_v5_gn_6_51140 Lactuca sativa HOM05D001920 ORTHO05D233273 5.2e-07 60.5 57 52.6
ATR0009G028 Amborella trichopoda HOM05D001920 ORTHO05D005408 1.5e-06 58.9 44 54.5
ECA232G0588 Erigeron canadensis HOM05D000006 ORTHO05D000001 1.5e-06 58.9 49 57.1
Lsat_1_v5_gn_1_94900 Lactuca sativa HOM05D001920 ORTHO05D231497 5.7e-06 57.0 34 67.6


User provided reference genes

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