Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb006450 Zea mays HOM05D000561 ORTHO05D008162 9.4e-167 590.1 298 100.0
Os03g0186100 Oryza sativa ssp. japonica HOM05D000561 ORTHO05D008162 8.9e-117 424.1 299 74.6
Atru.chr13.629 Acer truncatum HOM05D000561 ORTHO05D008162 6.7e-96 354.8 287 63.1
Atru.chr13.633 Acer truncatum HOM05D000561 ORTHO05D008162 6.7e-96 354.8 287 63.1
Nn5g30201 Nelumbo nucifera HOM05D000561 ORTHO05D000514 1.1e-95 354.0 247 70.9
PSO541G5839 Papaver somniferum HOM05D000561 ORTHO05D008162 3.4e-92 342.4 253 66.8
RcHm_v2.0_Chr6g0307161 Rosa chinensis HOM05D000561 ORTHO05D008162 5.8e-92 341.7 245 67.3
Ciclev10001965m.g Citrus clementina HOM05D000561 ORTHO05D008162 1.0e-91 340.9 265 63.8
ECA232G0584 Erigeron canadensis HOM05D000561 ORTHO05D008162 1.0e-91 340.9 276 61.6
GSVIVG01009559001 Vitis vinifera HOM05D000561 ORTHO05D008162 1.3e-91 340.5 247 66.8
Duzib116G0222 Durio zibethinus HOM05D000561 ORTHO05D008162 4.9e-91 338.6 292 59.2
PSO675G5921 Papaver somniferum HOM05D000561 ORTHO05D008162 4.9e-91 338.6 253 66.0
Prupe.1G440800 Prunus persica HOM05D000561 ORTHO05D008162 8.4e-91 337.8 247 66.0
TAR628G0509 Trochodendron aralioides HOM05D000561 ORTHO05D008162 8.4e-91 337.8 252 65.9
Dinv39338 Davidia involucrata HOM05D000561 ORTHO05D008162 2.5e-90 336.3 247 66.4
Potri.014G034700 Populus trichocarpa HOM05D000561 ORTHO05D008162 2.5e-90 336.3 247 66.4
Gohir.D05G203500 Gossypium hirsutum HOM05D000561 ORTHO05D008162 3.2e-90 335.9 295 56.9
TAR625G0340 Trochodendron aralioides HOM05D000561 ORTHO05D008162 7.1e-90 334.7 252 65.1
CAN.G371.47 Capsicum annuum HOM05D000561 ORTHO05D008162 1.6e-89 333.6 303 57.4
QL02p005893 Quercus lobata HOM05D000561 ORTHO05D008162 1.6e-89 333.6 246 67.9
CiPaw.16G047800 Carya illinoinensis HOM05D000561 ORTHO05D008162 3.5e-89 332.4 271 62.7
Sed0001510 Sechium edule HOM05D000561 ORTHO05D008162 3.5e-89 332.4 277 59.9
Gohir.A05G200200 Gossypium hirsutum HOM05D000561 ORTHO05D008162 1.8e-88 330.1 295 56.6
FAN27G1876 Fragaria x ananassa HOM05D000561 ORTHO05D008162 2.3e-88 329.7 294 60.2
CSS0036187 Camellia sinensis var. sinensis HOM05D000561 ORTHO05D008162 3.0e-88 329.3 246 65.9
Actinidia22609 Actinidia chinensis HOM05D000561 ORTHO05D008162 5.1e-88 328.6 291 58.4
DCAR_019467 Daucus carota HOM05D000561 ORTHO05D008162 5.1e-88 328.6 264 61.0
Gorai.009G209500 Gossypium raimondii HOM05D000561 ORTHO05D008162 6.7e-88 328.2 296 56.1
MD15G1087100 Malus domestica HOM05D000561 ORTHO05D008162 1.5e-87 327.0 248 64.1
vmacro21557 Vaccinium macrocarpon HOM05D000561 ORTHO05D008162 1.5e-87 327.0 248 65.7
CARHR050650 Cardamine hirsuta HOM05D000561 ORTHO05D008162 2.5e-87 326.2 247 64.0
AL4G19400 Arabidopsis lyrata HOM05D000561 ORTHO05D008162 4.3e-87 325.5 265 61.5
Carub.0003s2738 Capsella rubella HOM05D000561 ORTHO05D008162 4.3e-87 325.5 247 64.4
Sp4g07760 Schrenkiella parvula HOM05D000561 ORTHO05D008162 4.3e-87 325.5 247 64.0
Aqoxy6G01386 Aquilegia oxysepala HOM05D000561 ORTHO05D008162 5.7e-87 325.1 250 63.6
Hma1.2p1_0260F.1_g104740 Hydrangea macrophylla HOM05D000561 ORTHO05D008162 7.4e-87 324.7 245 64.1
MD08G1106500 Malus domestica HOM05D000561 ORTHO05D008162 7.4e-87 324.7 247 64.4
Manes.05G170800 Manihot esculenta HOM05D000561 ORTHO05D008162 7.4e-87 324.7 288 58.0
HPP92_011186 Vanilla planifolia HOM05D000561 ORTHO05D008162 7.4e-87 324.7 288 57.3
HanXRQChr09g0268001 Helianthus annuus HOM05D000561 ORTHO05D008162 9.6e-87 324.3 264 61.4
TWI56G0230 Tripterygium wilfordii HOM05D000561 ORTHO05D008162 9.6e-87 324.3 281 61.6
Migut.C00604 Erythranthe guttata HOM05D000561 ORTHO05D008162 1.6e-86 323.6 272 60.3
AT2G26540 Arabidopsis thaliana HOM05D000561 ORTHO05D008162 2.1e-86 323.2 258 61.6
MBI06_g08185_MAGBIO Magnolia biondii HOM05D000561 ORTHO05D008162 2.1e-86 323.2 321 53.9
Cc10_g03990 Coffea canephora HOM05D000561 ORTHO05D008162 2.8e-86 322.8 276 58.3
FvH4_2g34880 Fragaria vesca HOM05D000561 ORTHO05D008162 4.8e-86 322.0 238 67.6
Solyc04g079320.4 Solanum lycopersicum HOM05D000561 ORTHO05D008162 8.2e-86 321.2 252 63.5
Sopen04g032930 Solanum pennellii HOM05D000561 ORTHO05D008162 8.2e-86 321.2 252 63.5
Duzib093G1567 Durio zibethinus HOM05D000561 ORTHO05D008162 1.1e-85 320.9 294 55.4
Lj1g0015016 Lotus japonicus HOM05D000561 ORTHO05D008162 1.1e-85 320.9 297 56.9
Nitab4.5_0005549g0040 Nicotiana tabacum HOM05D000561 ORTHO05D008162 1.1e-85 320.9 241 65.1
Lalb_Chr08g0245641 Lupinus albus HOM05D000561 ORTHO05D008162 1.8e-85 320.1 244 63.9
CsaV3_2G028140 Cucumis sativus L. HOM05D000561 ORTHO05D008162 4.1e-85 318.9 245 63.7
Nitab4.5_0000068g0440 Nicotiana tabacum HOM05D000561 ORTHO05D008162 4.1e-85 318.9 241 64.7
BraA09t40923Z Brassica rapa HOM05D000561 ORTHO05D008162 5.3e-85 318.5 247 63.6
ClCG08G015630 Citrullus lanatus HOM05D000561 ORTHO05D008162 5.3e-85 318.5 251 62.2
Glyma.06G037300 Glycine max HOM05D000561 ORTHO05D008162 5.3e-85 318.5 244 62.7
Medtr3g101350 Medicago truncatula HOM05D000561 ORTHO05D008162 6.9e-85 318.2 244 64.3
Aa31LG10G9880 Aethionema arabicum HOM05D000561 ORTHO05D008162 1.2e-84 317.4 295 55.9
A09p55150 Brassica napus HOM05D000561 ORTHO05D008162 1.2e-84 317.4 247 62.8
BolC8t51383H Brassica oleracea HOM05D000561 ORTHO05D008162 1.2e-84 317.4 247 63.2
CDE06G2652 Ceratophyllum demersum HOM05D000561 ORTHO05D008162 1.2e-84 317.4 253 62.1
C08p38080 Brassica napus HOM05D000561 ORTHO05D008162 1.5e-84 317.0 247 62.8
BcaB08g35302 Brassica carinata HOM05D000561 ORTHO05D008162 2.6e-84 316.2 293 56.3
THA.LOC104803685 Tarenaya hassleriana HOM05D000561 ORTHO05D008162 2.6e-84 316.2 247 61.9
Phvul.009G063100 Phaseolus vulgaris HOM05D000561 ORTHO05D008162 3.4e-84 315.8 242 63.2
Psat5g044440 Pisum sativum HOM05D000561 ORTHO05D008162 3.4e-84 315.8 277 59.2
arahy.Tifrunner.gnm1.ann1.YYC1CT Arachis hypogaea HOM05D000561 ORTHO05D008162 5.9e-84 315.1 244 63.5
Rhsim06G0046600 Rhododendron simsii HOM05D000561 ORTHO05D008162 7.6e-84 314.7 255 62.7
MSTRG.1332 Avicennia marina HOM05D000561 ORTHO05D008162 1.0e-83 314.3 262 60.3
MELO3C010892.2 Cucumis melo HOM05D000561 ORTHO05D008162 1.0e-83 314.3 245 62.9
Sabra14G0024600 Salix brachista HOM05D000561 ORTHO05D008162 1.3e-83 313.9 236 65.7
TPR.G10521 Trifolium pratense HOM05D000561 ORTHO05D008162 3.8e-83 312.4 242 62.4
Haze_17567 Corylus avellana HOM05D000561 ORTHO05D008162 1.1e-82 310.8 290 56.6
Peaxi162Scf00566g00219 Petunia axillaris HOM05D000561 ORTHO05D008162 1.9e-82 310.1 259 62.5
COL.COLO4_26457 Corchorus olitorius HOM05D000561 ORTHO05D008162 2.5e-82 309.7 227 64.8
Thecc.08G013400 Theobroma cacao HOM05D000561 ORTHO05D008162 3.2e-82 309.3 236 64.0
Lsat_1_v5_gn_4_124200 Lactuca sativa HOM05D000561 ORTHO05D008162 4.2e-82 308.9 293 54.6
HanXRQChr02g0038741 Helianthus annuus HOM05D000561 ORTHO05D008162 5.5e-82 308.5 250 60.4
BcaC07g40815 Brassica carinata HOM05D000561 ORTHO05D008162 2.7e-81 306.2 240 62.5
Eucgr.F02370 Eucalyptus grandis HOM05D000561 ORTHO05D008162 1.0e-80 304.3 228 65.8
Lsat_1_v5_gn_1_20480 Lactuca sativa HOM05D000561 ORTHO05D008162 1.3e-80 303.9 250 60.4
Manes.18G034000 Manihot esculenta HOM05D000561 ORTHO05D008162 2.3e-80 303.1 235 63.8
Ca_15966_v3 Cicer arietinum L. HOM05D000561 ORTHO05D008162 2.5e-79 299.7 235 62.6
EL10Ac1g01805 Beta vulgaris HOM05D000561 ORTHO05D008162 1.6e-78 297.0 285 55.8
Sabra02G0100300 Salix brachista HOM05D000561 ORTHO05D008162 2.6e-76 289.7 221 64.3
Thhalv10001252m.g Eutrema salsugineum HOM05D000561 ORTHO05D008162 4.5e-76 288.9 247 59.9
SGA_v2.0_scaffold71G24043 Striga asiatica HOM05D000561 ORTHO05D008162 1.3e-75 287.3 257 57.6
PGR031G3300 Punica granatum HOM05D000561 ORTHO05D008162 2.9e-75 286.2 258 57.4
ATR0087G004 Amborella trichopoda HOM05D000561 ORTHO05D008162 6.5e-75 285.0 227 61.7
SalBow7G2378 Salvia bowleyana HOM05D000561 ORTHO05D008162 8.5e-75 284.6 294 49.3
Migut.O00512 Erythranthe guttata HOM05D000561 ORTHO05D008162 4.2e-74 282.3 329 46.8
FAN20G2490 Fragaria x ananassa HOM05D000561 ORTHO05D008162 4.6e-73 278.9 327 48.9
Pp3c9_18350 Physcomitrium patens HOM05D000561 ORTHO05D008162 8.8e-72 274.6 252 53.2
Hund26617 Selenicereus undatus HOM05D000561 ORTHO05D008162 2.2e-70 270.0 365 43.3
AagrBONN_evm.TU.Sc2ySwM_228.1283 Anthoceros agrestis HOM05D000561 ORTHO05D008162 1.1e-69 267.7 246 53.7
VMungo1309G1588 Vigna mungo HOM05D000561 ORTHO05D008162 4.5e-68 262.3 231 56.3
Mapoly0101s0072 Marchantia polymorpha HOM05D000561 ORTHO05D008162 2.2e-67 260.0 245 52.7
Lj4A51T47 Lonicera japonica HOM05D000561 ORTHO05D008162 5.0e-67 258.8 184 68.5
Ah.06g192790 Amaranthus hybridus HOM05D000561 ORTHO05D008162 1.2e-65 254.2 276 50.7
Cpa.g.sc64.2 Carica papaya HOM05D000561 ORTHO05D008162 6.7e-64 248.4 184 67.9
AUR62022458 Chenopodium quinoa HOM05D000561 ORTHO05D008162 7.4e-63 245.0 243 56.4
ECA247G1201 Erigeron canadensis HOM05D000561 ORTHO05D000514 9.7e-63 244.6 198 58.6
SEGI_40608 Sequoiadendron giganteum HOM05D000561 ORTHO05D008162 6.3e-62 241.9 234 52.6
Glyma.04G037000 Glycine max HOM05D000561 ORTHO05D008162 3.1e-61 239.6 212 55.2
Carub.0004s0671 Capsella rubella HOM05D000561 ORTHO05D008162 1.2e-60 237.7 247 53.4
SMO367G0032 Selaginella moellendorffii HOM05D000561 ORTHO05D008162 1.1e-58 231.1 245 49.0
SHI08313 Sapria himalayana HOM05D000561 ORTHO05D008162 1.9e-58 230.3 252 50.0
CBR_g12178 Chara braunii HOM05D000561 ORTHO05D008162 2.5e-58 229.9 275 44.0
AUR62040067 Chenopodium quinoa HOM05D000561 ORTHO05D008162 1.5e-55 220.7 304 45.7
Cre09.g409100 Chlamydomonas reinhardtii HOM05D000561 ORTHO05D008162 1.6e-52 210.7 273 44.0
Sc26g0003980 Simmondsia chinensis HOM05D000561 ORTHO05D008162 5.0e-51 205.7 168 61.9
MCO15G161 Micromonas commoda HOM05D000561 ORTHO05D008162 1.7e-46 190.7 287 40.1
PRCOL_00005348 Prasinoderma coloniale HOM05D000561 ORTHO05D008162 9.1e-45 184.9 250 43.6
CDE10G0258 Ceratophyllum demersum HOM05D000561 ORTHO05D008162 2.0e-44 183.7 171 53.2
unitig_32.g11128 Utricularia gibba HOM05D000561 ORTHO05D008162 5.5e-42 175.6 146 58.9
arahy.Tifrunner.gnm1.ann1.96H4RR Arachis hypogaea HOM05D000561 ORTHO05D008162 4.0e-40 169.5 139 59.7
Migut.N02692 Erythranthe guttata HOM05D000561 ORTHO05D008162 4.0e-40 169.5 191 49.7
Lsat_1_v5_gn_2_45600 Lactuca sativa HOM05D000561 ORTHO05D008162 4.5e-36 156.0 204 42.6
SGA_v2.0_scaffold217G42442 Striga asiatica HOM05D000561 ORTHO05D008162 4.0e-32 142.9 116 61.2
Lsat_1_v5_gn_5_145360 Lactuca sativa HOM05D000561 ORTHO05D008162 2.0e-28 130.6 163 44.8
SGA_v2.0_scaffold217G42441 Striga asiatica HOM05D000561 ORTHO05D008162 3.0e-19 100.1 79 58.2
Lsat_1_v5_gn_5_39421 Lactuca sativa HOM05D000487 ORTHO05D048384 1.9e-18 97.4 77 57.1


User provided reference genes

Program Settings