Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb006400 Zea mays HOM05D004438 ORTHO05D005256 9.4e-68 260.0 126 100.0
Os03g0185600 Oryza sativa ssp. japonica HOM05D004438 ORTHO05D005256 2.2e-64 248.8 126 95.2
Zm00001eb401580 Zea mays HOM05D004438 ORTHO05D005256 2.2e-64 248.8 126 95.2
PSO675G7198 Papaver somniferum HOM05D004438 ORTHO05D005256 4.7e-59 231.1 123 85.4
Haze_25054 Corylus avellana HOM05D004438 ORTHO05D005256 8.0e-59 230.3 121 88.4
Solyc04g051710.2 Solanum lycopersicum HOM05D004438 ORTHO05D005256 8.0e-59 230.3 124 85.5
Sopen04g023090 Solanum pennellii HOM05D004438 ORTHO05D005256 8.0e-59 230.3 124 85.5
AUR62027160 Chenopodium quinoa HOM05D004438 ORTHO05D005256 1.0e-58 229.9 121 88.4
AUR62044399 Chenopodium quinoa HOM05D004438 ORTHO05D005256 1.0e-58 229.9 121 88.4
Cfa002762 Carpinus fangiana HOM05D004438 ORTHO05D005256 1.4e-58 229.6 123 86.2
Rhsim10G0149000 Rhododendron simsii HOM05D004438 ORTHO05D005256 1.4e-58 229.6 123 86.2
PSO541G1989 Papaver somniferum HOM05D004438 ORTHO05D005256 1.8e-58 229.2 123 84.6
RcHm_v2.0_Chr2g0117091 Rosa chinensis HOM05D004438 ORTHO05D005256 1.8e-58 229.2 123 88.6
PGSC0003DMG400031197 Solanum tuberosum HOM05D004438 ORTHO05D005256 1.8e-58 229.2 124 84.7
Peaxi162Scf00106g00162 Petunia axillaris HOM05D004438 ORTHO05D005256 2.3e-58 228.8 124 84.7
CSS0020413 Camellia sinensis var. sinensis HOM05D004438 ORTHO05D005256 3.0e-58 228.4 123 84.6
FvH4_1g22770 Fragaria vesca HOM05D004438 ORTHO05D005256 3.0e-58 228.4 123 87.8
FAN19G1036 Fragaria x ananassa HOM05D004438 ORTHO05D005256 3.0e-58 228.4 123 87.8
FAN23G1009 Fragaria x ananassa HOM05D004438 ORTHO05D005256 3.0e-58 228.4 123 87.8
FAN26G1829 Fragaria x ananassa HOM05D004438 ORTHO05D005256 3.0e-58 228.4 123 87.8
FAN28G0942 Fragaria x ananassa HOM05D004438 ORTHO05D005256 3.0e-58 228.4 123 87.8
BcaB02g09832 Brassica carinata HOM05D004438 ORTHO05D005256 4.0e-58 228.0 123 83.7
BcaC01g02715 Brassica carinata HOM05D004438 ORTHO05D005256 4.0e-58 228.0 123 83.7
A06p31610 Brassica napus HOM05D004438 ORTHO05D005256 4.0e-58 228.0 123 83.7
C03p61350 Brassica napus HOM05D004438 ORTHO05D005256 4.0e-58 228.0 123 83.7
BolC3t18395H Brassica oleracea HOM05D004438 ORTHO05D005256 4.0e-58 228.0 123 83.7
BraA06t26098Z Brassica rapa HOM05D004438 ORTHO05D005256 4.0e-58 228.0 123 83.7
CARHR278820 Cardamine hirsuta HOM05D004438 ORTHO05D005256 4.0e-58 228.0 123 83.7
Sp2g27890 Schrenkiella parvula HOM05D004438 ORTHO05D005256 4.0e-58 228.0 123 83.7
TWI53G0984 Tripterygium wilfordii HOM05D004438 ORTHO05D005256 4.0e-58 228.0 122 84.4
MBI11_g03707_MAGBIO Magnolia biondii HOM05D004438 ORTHO05D005256 5.2e-58 227.6 123 84.6
Ah.03g137490 Amaranthus hybridus HOM05D004438 ORTHO05D005256 6.8e-58 227.3 123 83.7
COL.COLO4_11000 Corchorus olitorius HOM05D004438 ORTHO05D005256 6.8e-58 227.3 123 83.7
Carub.0008s2564 Capsella rubella HOM05D004438 ORTHO05D005256 8.9e-58 226.9 123 84.6
Cpa.g.sc21.8 Carica papaya HOM05D004438 ORTHO05D005256 8.9e-58 226.9 123 83.7
MD15G1340400 Malus domestica HOM05D004438 ORTHO05D005256 1.2e-57 226.5 123 87.0
THA.LOC104799304 Tarenaya hassleriana HOM05D004438 ORTHO05D005256 1.2e-57 226.5 123 82.9
Actinidia06107 Actinidia chinensis HOM05D004438 ORTHO05D005256 1.5e-57 226.1 123 83.7
Thhalv10005124m.g Eutrema salsugineum HOM05D004438 ORTHO05D005256 1.5e-57 226.1 123 82.9
Prupe.4G171500 Prunus persica HOM05D004438 ORTHO05D005256 2.0e-57 225.7 123 85.4
Dinv42684 Davidia involucrata HOM05D004438 ORTHO05D005256 2.6e-57 225.3 123 84.6
Gorai.007G245000 Gossypium raimondii HOM05D004438 ORTHO05D005256 2.6e-57 225.3 123 82.1
Phvul.L002244 Phaseolus vulgaris HOM05D004438 ORTHO05D005256 2.6e-57 225.3 122 84.4
SGA_v2.0_scaffold79G25619 Striga asiatica HOM05D004438 ORTHO05D005256 2.6e-57 225.3 123 83.7
VMungo0720G0202 Vigna mungo HOM05D004438 ORTHO05D005256 2.6e-57 225.3 122 84.4
Ah.02g126620 Amaranthus hybridus HOM05D004438 ORTHO05D005256 3.4e-57 224.9 123 83.7
AL8G42290 Arabidopsis lyrata HOM05D004438 ORTHO05D005256 4.4e-57 224.6 123 82.9
AT5G64816 Arabidopsis thaliana HOM05D004438 ORTHO05D005256 4.4e-57 224.6 123 82.9
Cc10_g15830 Coffea canephora HOM05D004438 ORTHO05D005256 4.4e-57 224.6 123 84.6
QL06p031963 Quercus lobata HOM05D004438 ORTHO05D005256 4.4e-57 224.6 123 83.7
ClCG01G016040 Citrullus lanatus HOM05D004438 ORTHO05D005256 5.7e-57 224.2 123 82.9
MD03G1238400 Malus domestica HOM05D004438 ORTHO05D005256 5.7e-57 224.2 123 86.2
Dinv19477 Davidia involucrata HOM05D004438 ORTHO05D005256 7.5e-57 223.8 122 84.4
CsaV3_6G042320 Cucumis sativus L. HOM05D004438 ORTHO05D005256 9.8e-57 223.4 123 82.1
Nitab4.5_0000131g0360 Nicotiana tabacum HOM05D004438 ORTHO05D005256 9.8e-57 223.4 123 81.3
Duzib187G1770 Durio zibethinus HOM05D004438 ORTHO05D005256 1.3e-56 223.0 123 81.3
Nitab4.5_0003709g0100 Nicotiana tabacum HOM05D004438 ORTHO05D005256 1.3e-56 223.0 123 81.3
Prupe.6G170300 Prunus persica HOM05D004438 ORTHO05D005256 1.3e-56 223.0 123 86.2
Thecc.01G114400 Theobroma cacao HOM05D004438 ORTHO05D005256 1.3e-56 223.0 123 82.1
Glyma.01G200000 Glycine max HOM05D004438 ORTHO05D005256 1.7e-56 222.6 122 82.8
Gohir.A11G197600 Gossypium hirsutum HOM05D004438 ORTHO05D005256 1.7e-56 222.6 123 80.5
Lsat_1_v5_gn_8_150501 Lactuca sativa HOM05D004438 ORTHO05D005256 1.7e-56 222.6 122 86.1
Peaxi162Scf00979g00008 Petunia axillaris HOM05D004438 ORTHO05D005256 1.7e-56 222.6 123 82.1
Potri.002G105400 Populus trichocarpa HOM05D004438 ORTHO05D005256 1.7e-56 222.6 123 82.9
SGA_v2.0_scaffold308G48110 Striga asiatica HOM05D004438 ORTHO05D005256 1.7e-56 222.6 123 82.1
Eucgr.F02140 Eucalyptus grandis HOM05D004438 ORTHO05D005256 2.2e-56 222.2 123 81.3
Lalb_Chr02g0150651 Lupinus albus HOM05D004438 ORTHO05D005256 2.2e-56 222.2 122 83.6
Oeu027202.1 Olea europaea HOM05D004438 ORTHO05D005256 2.2e-56 222.2 122 82.0
DCAR_009568 Daucus carota HOM05D004438 ORTHO05D005256 2.9e-56 221.9 123 83.7
Lj5g0016992 Lotus japonicus HOM05D004438 ORTHO05D005256 2.9e-56 221.9 122 83.6
Potri.005G156400 Populus trichocarpa HOM05D004438 ORTHO05D005256 2.9e-56 221.9 121 84.3
Glyma.10G190000 Glycine max HOM05D004438 ORTHO05D005256 3.7e-56 221.5 122 82.8
MSTRG.9937 Avicennia marina HOM05D004438 ORTHO05D005256 4.9e-56 221.1 123 82.1
CiPaw.03G133700 Carya illinoinensis HOM05D004438 ORTHO05D005256 4.9e-56 221.1 123 81.3
Gohir.A11G053800 Gossypium hirsutum HOM05D004438 ORTHO05D005256 4.9e-56 221.1 123 79.7
Medtr1g073620 Medicago truncatula HOM05D004438 ORTHO05D005256 4.9e-56 221.1 122 82.8
Gohir.D11G231900 Gossypium hirsutum HOM05D004438 ORTHO05D005256 6.4e-56 220.7 123 81.3
HanXRQChr12g0372061 Helianthus annuus HOM05D004438 ORTHO05D005256 6.4e-56 220.7 123 83.7
QL01p009111 Quercus lobata HOM05D004438 ORTHO05D005256 8.3e-56 220.3 123 82.1
RcHm_v2.0_Chr5g0031621 Rosa chinensis HOM05D000965 ORTHO05D000842 8.3e-56 220.3 122 83.6
TPR.G28848 Trifolium pratense HOM05D004438 ORTHO05D005256 8.3e-56 220.3 122 82.0
Aa31LG1G17110 Aethionema arabicum HOM05D004438 ORTHO05D005256 1.1e-55 219.9 123 81.3
Aqoxy2G01099 Aquilegia oxysepala HOM05D004438 ORTHO05D005256 1.1e-55 219.9 123 81.3
ECA233G2293 Erigeron canadensis HOM05D004438 ORTHO05D005256 1.1e-55 219.9 123 84.6
HPP92_015825 Vanilla planifolia HOM05D004438 ORTHO05D005256 1.4e-55 219.5 122 79.5
MELO3C007474.2 Cucumis melo HOM05D004438 ORTHO05D005256 1.8e-55 219.2 123 81.3
DCAR_009565 Daucus carota HOM05D004438 ORTHO05D005256 1.8e-55 219.2 123 82.9
Migut.N00230 Erythranthe guttata HOM05D004438 ORTHO05D005256 1.8e-55 219.2 123 80.5
Gohir.D11G057300 Gossypium hirsutum HOM05D004438 ORTHO05D005256 1.8e-55 219.2 123 78.9
MD15G1331400 Malus domestica HOM05D004438 ORTHO05D005256 1.8e-55 219.2 123 84.6
SalBow3G3218 Salvia bowleyana HOM05D004438 ORTHO05D005256 1.8e-55 219.2 123 80.5
TAR381G0625 Trochodendron aralioides HOM05D004438 ORTHO05D005256 1.8e-55 219.2 123 80.5
vmacro18638 Vaccinium macrocarpon HOM05D004438 ORTHO05D005256 2.4e-55 218.8 123 81.3
TWI74G1039 Tripterygium wilfordii HOM05D004438 ORTHO05D005256 3.2e-55 218.4 119 81.5
Sopen00g011470 Solanum pennellii HOM05D004438 ORTHO05D005256 4.1e-55 218.0 123 79.7
TAR625G0091 Trochodendron aralioides HOM05D004438 ORTHO05D005256 4.1e-55 218.0 123 79.7
TAR625G0287 Trochodendron aralioides HOM05D004438 ORTHO05D005256 4.1e-55 218.0 125 78.4
CAN.G344.10 Capsicum annuum HOM05D004438 ORTHO05D005256 5.4e-55 217.6 124 80.6
Atru.chr13.1020 Acer truncatum HOM05D004438 ORTHO05D005256 9.2e-55 216.9 123 80.5
Gohir.A10G084200 Gossypium hirsutum HOM05D004438 ORTHO05D005256 9.2e-55 216.9 123 78.9
Sed0014495 Sechium edule HOM05D004438 ORTHO05D005256 9.2e-55 216.9 123 78.9
Solyc04g076260.2 Solanum lycopersicum HOM05D004438 ORTHO05D005256 9.2e-55 216.9 123 79.7
CANSAT01G2942 Cannabis sativa HOM05D004438 ORTHO05D005256 1.2e-54 216.5 123 82.1
CAN.G475.35 Capsicum annuum HOM05D004438 ORTHO05D005256 1.2e-54 216.5 123 80.5
Gorai.011G114100 Gossypium raimondii HOM05D004438 ORTHO05D005256 1.2e-54 216.5 123 78.9
Sed0003177 Sechium edule HOM05D004438 ORTHO05D005256 1.2e-54 216.5 123 78.9
THA.LOC104819312 Tarenaya hassleriana HOM05D004438 ORTHO05D005256 1.2e-54 216.5 123 78.9
Glyma.20G200800 Glycine max HOM05D004438 ORTHO05D005256 1.6e-54 216.1 122 78.7
Manes.10G131700 Manihot esculenta HOM05D004438 ORTHO05D005256 2.7e-54 215.3 123 80.5
Gohir.D10G104600 Gossypium hirsutum HOM05D004438 ORTHO05D005256 3.5e-54 214.9 123 78.0
PGSC0003DMG400009364 Solanum tuberosum HOM05D004438 ORTHO05D005256 3.5e-54 214.9 123 79.7
Ciclev10002841m.g Citrus clementina HOM05D004438 ORTHO05D005256 4.6e-54 214.5 123 78.0
Nn5g29898 Nelumbo nucifera HOM05D004438 ORTHO05D005256 7.8e-54 213.8 123 80.5
unitig_699.g19132 Utricularia gibba HOM05D004438 ORTHO05D005256 7.8e-54 213.8 123 78.9
Psat7g208520 Pisum sativum HOM05D004438 ORTHO05D005256 2.9e-53 211.8 122 78.7
GSVIVG01009169001 Vitis vinifera HOM05D004438 ORTHO05D005256 3.9e-53 211.5 123 79.7
Nitab4.5_0000184g0290 Nicotiana tabacum HOM05D004438 ORTHO05D005256 6.6e-53 210.7 115 83.5
Psat6g129880 Pisum sativum HOM05D004438 ORTHO05D005256 8.6e-53 210.3 122 76.2
SalBow2G1806 Salvia bowleyana HOM05D004438 ORTHO05D005256 7.3e-52 207.2 124 76.6
Sc03g0004400 Simmondsia chinensis HOM05D004438 ORTHO05D005256 7.3e-52 207.2 115 82.6
EL10Ac6g13106 Beta vulgaris HOM05D004438 ORTHO05D005256 1.8e-50 202.6 107 87.9
CDE02G2078 Ceratophyllum demersum HOM05D004438 ORTHO05D005256 1.8e-50 202.6 112 83.9
Sabra02G0082700 Salix brachista HOM05D004438 ORTHO05D005256 2.3e-50 202.2 124 76.6
Manes.02G145100 Manihot esculenta HOM05D004438 ORTHO05D005256 3.1e-50 201.8 110 87.3
FvH4_3g18771 Fragaria vesca HOM05D004438 ORTHO05D005256 1.2e-49 199.9 115 82.6
Sabra05G0119900 Salix brachista HOM05D004438 ORTHO05D005256 3.4e-49 198.4 112 81.2
Nitab4.5_0004977g0040 Nicotiana tabacum HOM05D004438 ORTHO05D005256 1.7e-48 196.1 107 84.1
FAN16G1755 Fragaria x ananassa HOM05D004438 ORTHO05D005256 2.2e-48 195.7 108 85.2
ATR1132G028 Amborella trichopoda HOM05D004438 ORTHO05D005256 2.9e-48 195.3 128 73.4
Lalb_Chr21g0312471 Lupinus albus HOM05D004438 ORTHO05D005256 2.9e-48 195.3 118 76.3
Sc23g0000680 Simmondsia chinensis HOM05D004438 ORTHO05D005256 2.9e-48 195.3 120 74.2
Gorai.007G062500 Gossypium raimondii HOM05D004438 ORTHO05D005256 8.3e-48 193.7 123 73.2
Nn1g08461 Nelumbo nucifera HOM05D004438 ORTHO05D005256 1.2e-46 189.9 103 84.5
TWI56G0149 Tripterygium wilfordii HOM05D004438 ORTHO05D005256 6.0e-46 187.6 124 72.6
SHI31196 Sapria himalayana HOM05D004438 ORTHO05D005256 5.0e-45 184.5 122 68.9
FAN11G0727 Fragaria x ananassa HOM05D000965 ORTHO05D000842 1.1e-44 183.3 98 86.7
Duzib264G0014 Durio zibethinus HOM05D004438 ORTHO05D005256 4.3e-44 181.4 101 83.2
FAN21G3234 Fragaria x ananassa HOM05D000965 ORTHO05D000842 5.6e-44 181.0 98 84.7
Migut.G00404 Erythranthe guttata HOM05D004438 ORTHO05D005256 2.1e-43 179.1 131 67.9
Nitab4.5_0004977g0030 Nicotiana tabacum HOM05D004438 ORTHO05D005256 2.3e-42 175.6 89 88.8
Mapoly0031s0095 Marchantia polymorpha HOM05D004438 ORTHO05D005256 8.9e-42 173.7 123 65.9
AagrBONN_evm.TU.Sc2ySwM_117.295 Anthoceros agrestis HOM05D004438 ORTHO05D005256 1.2e-41 173.3 126 62.7
Oeu028520.2 Olea europaea HOM05D004438 ORTHO05D005256 2.2e-40 169.1 102 78.4
CSS0036861 Camellia sinensis var. sinensis HOM05D004438 ORTHO05D005256 4.9e-40 167.9 98 81.6
Pp3c22_12110 Physcomitrium patens HOM05D004438 ORTHO05D005256 7.1e-39 164.1 120 60.8
SEGI_36857 Sequoiadendron giganteum HOM05D004438 ORTHO05D005256 1.6e-38 162.9 88 84.1
COL.COLO4_35234 Corchorus olitorius HOM05D004438 ORTHO05D005256 4.6e-38 161.4 129 62.8
Rhsim08G0005900 Rhododendron simsii HOM05D004438 ORTHO05D005256 2.3e-37 159.1 102 72.5
Pp3c19_18370 Physcomitrium patens HOM05D004438 ORTHO05D005256 2.2e-32 142.5 120 54.2
Gohir.1Z049407 Gossypium hirsutum HOM05D004438 ORTHO05D005256 3.2e-31 138.7 67 89.6
SEGI_35678 Sequoiadendron giganteum HOM05D004438 ORTHO05D005256 1.2e-30 136.7 122 57.4
AagrBONN_evm.TU.Sc2ySwM_344.1988 Anthoceros agrestis HOM05D004438 ORTHO05D005256 2.7e-30 135.6 122 54.1
arahy.Tifrunner.gnm1.ann1.7JV24P Arachis hypogaea HOM05D004438 ORTHO05D005256 6.8e-26 120.9 57 89.5
CSS0034319 Camellia sinensis var. sinensis HOM05D004438 ORTHO05D005256 4.4e-25 118.2 110 56.4
CSS0009061 Camellia sinensis var. sinensis HOM05D004438 ORTHO05D005256 7.6e-25 117.5 108 56.5
PRCOL_00001176 Prasinoderma coloniale HOM05D004438 ORTHO05D005256 2.7e-22 109.0 82 54.9
MCO08G336 Micromonas commoda HOM05D004438 ORTHO05D005256 3.0e-21 105.5 99 51.5
ATR0049G041 Amborella trichopoda HOM05D004438 ORTHO05D005256 3.3e-20 102.1 126 42.1
Cre07.g313800 Chlamydomonas reinhardtii HOM05D004438 ORTHO05D005256 1.3e-19 100.1 74 56.8
CiPaw.04G091100 Carya illinoinensis HOM05D004438 ORTHO05D005256 2.8e-19 99.0 62 74.2
CSS0036545 Camellia sinensis var. sinensis HOM05D004438 ORTHO05D005256 4.2e-15 85.1 43 86.0
Hund21738 Selenicereus undatus HOM05D004438 ORTHO05D005256 9.6e-12 73.9 35 94.3
SalBow2G3602 Salvia bowleyana HOM05D004438 ORTHO05D005256 5.8e-09 64.7 32 84.4
CBR_g51299 Chara braunii HOM05D004438 ORTHO05D005256 2.9e-08 62.4 35 77.1
SalBow1G8643 Salvia bowleyana HOM05D000379 ORTHO05D000254 1.1e-07 60.5 33 75.8


User provided reference genes

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